Wall clock time and date at job start Tue Mar 31 2020 17:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35903 * 116.99699 * 2 1 4 4 C 1.38746 * 120.05537 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94329 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.05617 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94664 * 180.02562 * 6 5 4 8 8 C 1.38254 * 120.11056 * 359.75216 * 6 5 4 9 9 C 1.38166 * 120.05449 * 0.50186 * 8 6 5 10 10 C 1.50696 * 120.02656 * 179.77802 * 9 8 6 11 11 C 1.50709 * 109.46901 * 264.72167 * 10 9 8 12 12 O 1.21282 * 119.99617 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00019 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99718 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46749 * 180.02562 * 14 13 11 16 16 O 1.42904 * 113.41731 * 51.80016 * 15 14 13 17 17 C 1.53504 * 114.20366 * 185.00010 * 15 14 13 18 18 N 1.47066 * 88.04678 * 87.54725 * 17 15 14 19 19 C 1.36941 * 136.05541 * 207.05070 * 18 17 15 20 20 H 1.07998 * 119.99878 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99593 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00459 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99771 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46679 * 89.99981 * 23 21 19 25 25 H 1.48491 * 109.47288 * 209.99798 * 23 21 19 26 26 H 1.48502 * 109.47105 * 330.00301 * 23 21 19 27 27 C 1.47064 * 87.88659 * 27.09306 * 18 17 15 28 28 H 1.09002 * 109.46948 * 299.99831 * 1 2 3 29 29 H 1.08999 * 109.46853 * 60.00303 * 1 2 3 30 30 H 1.09000 * 109.46619 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.02934 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.97083 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47363 * 90.00210 * 7 6 5 34 34 H 1.09002 * 109.46773 * 210.00627 * 7 6 5 35 35 H 1.09002 * 109.46983 * 329.99827 * 7 6 5 36 36 H 1.08001 * 119.97311 * 180.25667 * 8 6 5 37 37 H 1.09000 * 109.47431 * 144.72721 * 10 9 8 38 38 H 1.08998 * 109.47721 * 24.71768 * 10 9 8 39 39 H 0.96999 * 120.00738 * 359.97438 * 13 11 10 40 40 H 1.08995 * 109.47151 * 60.00171 * 14 13 11 41 41 H 1.09002 * 109.47077 * 299.99631 * 14 13 11 42 42 H 0.96700 * 113.99553 * 313.20347 * 16 15 14 43 43 H 1.09002 * 113.46865 * 332.73821 * 17 15 14 44 44 H 1.08999 * 113.46581 * 202.35597 * 17 15 14 45 45 H 0.97000 * 120.00117 * 180.02562 * 22 21 19 46 46 H 1.08999 * 113.47096 * 87.65665 * 27 18 17 47 47 H 1.09005 * 113.46966 * 218.04058 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6759 0.0016 7 6 3.9859 5.0186 0.0028 8 6 4.0559 2.5172 0.0068 9 6 3.4311 1.2849 0.0010 10 6 4.2538 0.0223 0.0015 11 6 4.4248 -0.4665 -1.4138 12 8 3.9280 0.1501 -2.3324 13 7 5.1298 -1.5887 -1.6586 14 6 5.2956 -2.0640 -3.0345 15 6 6.1298 -3.3465 -3.0338 16 8 5.6379 -4.3436 -2.1360 17 6 6.4735 -3.8745 -4.4336 18 7 7.6619 -3.0085 -4.4136 19 6 8.4414 -2.3822 -5.3492 20 1 8.2117 -2.4847 -6.3995 21 6 9.5266 -1.6155 -4.9476 22 7 9.8068 -1.4910 -3.6676 23 14 10.5896 -0.7605 -6.2238 24 1 10.0471 0.5957 -6.4914 25 1 11.9795 -0.6459 -5.7140 26 1 10.5869 -1.5516 -7.4806 27 6 7.6455 -3.1120 -2.9467 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 0.2128 2.3203 0.0014 32 1 1.3339 4.5114 0.0019 33 1 4.1506 5.3417 1.0307 34 1 4.9440 4.9386 -0.5109 35 1 3.3581 5.7468 -0.5108 36 1 5.1344 2.5753 0.0114 37 1 3.7466 -0.7417 0.5908 38 1 5.2324 0.2263 0.4361 39 1 5.5275 -2.0817 -0.9240 40 1 5.8029 -1.3005 -3.6240 41 1 4.3169 -2.2679 -3.4688 42 1 5.4224 -4.0077 -1.2552 43 1 5.7448 -3.5941 -5.1943 44 1 6.7116 -4.9381 -4.4500 45 1 10.5650 -0.9550 -3.3869 46 1 8.1957 -3.9725 -2.5660 47 1 7.9144 -2.1835 -2.4429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724459708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:15 Heat of formation + Delta-G solvation = -38.324775 kcal Electronic energy + Delta-G solvation = -28901.703770 eV Core-core repulsion = 24859.014060 eV Total energy + Delta-G solvation = -4042.689710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.56440 -39.57411 -38.50053 -37.71557 -35.06801 -33.85527 -33.32758 -32.02501 -31.69621 -28.90612 -28.03446 -27.58382 -26.05166 -25.64100 -24.74589 -22.50453 -22.07645 -21.13876 -20.08769 -18.98151 -18.14864 -17.45833 -16.77737 -16.62732 -16.26821 -15.79080 -15.44745 -15.15538 -14.88544 -14.65340 -14.43930 -14.09057 -13.93537 -13.84278 -13.69134 -13.42185 -13.18835 -12.92816 -12.57139 -12.41054 -12.23306 -12.16440 -12.03804 -11.80023 -11.66042 -11.37015 -11.05985 -10.99832 -10.97862 -10.91051 -10.87733 -10.45880 -10.07271 -9.66347 -9.57886 -9.01833 -8.91229 -8.84219 -8.69712 -8.06241 -6.95865 -5.81683 -3.15125 1.22721 1.35468 2.95240 3.16466 3.33426 3.38869 3.43315 3.45054 3.75291 4.34996 4.54238 4.65682 4.67230 4.76385 4.86578 4.96348 5.01633 5.12156 5.17762 5.19587 5.23342 5.27120 5.30866 5.33728 5.42132 5.51247 5.52946 5.58159 5.63137 5.82045 5.97005 6.01373 6.20784 6.29835 6.31381 6.46708 6.52759 6.53292 6.60332 6.70991 6.71624 7.06270 7.12340 7.28201 7.45143 7.72380 7.90227 8.05673 8.51640 8.98430 9.64949 10.55510 11.35674 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.003030 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.220174 B = 9238.223319 C =10907.936351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.137 3.863 4 C -0.206 4.206 5 C -0.083 4.083 6 C -0.124 4.124 7 C -0.109 4.109 8 C -0.069 4.069 9 C -0.089 4.089 10 C -0.094 4.094 11 C 0.519 3.481 12 O -0.532 6.532 13 N -0.726 5.726 14 C 0.131 3.869 15 C 0.050 3.950 16 O -0.551 6.551 17 C 0.138 3.862 18 N -0.602 5.602 19 C -0.218 4.218 20 H 0.084 0.916 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.915 3.085 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.138 3.862 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.395 0.605 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.363 0.637 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.254 0.746 46 H 0.033 0.967 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.232 6.567 13.716 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.092 3.908 4 C -0.225 4.225 5 C -0.101 4.101 6 C -0.124 4.124 7 C -0.165 4.165 8 C -0.087 4.087 9 C -0.090 4.090 10 C -0.134 4.134 11 C 0.305 3.695 12 O -0.408 6.408 13 N -0.379 5.379 14 C 0.007 3.993 15 C 0.008 3.992 16 O -0.355 6.355 17 C 0.011 3.989 18 N -0.330 5.330 19 C -0.345 4.345 20 H 0.102 0.898 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.745 3.255 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.011 3.989 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.228 0.772 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.209 0.791 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.138 6.636 12.368 22.152 hybrid contribution 0.555 0.546 0.152 0.794 sum -16.583 7.182 12.519 21.984 Atomic orbital electron populations 1.23027 0.78619 1.03846 1.01122 1.86063 1.21142 1.26868 1.88551 1.18732 0.91617 0.84214 0.96236 1.21124 0.99747 0.92306 1.09284 1.20761 0.93925 0.96858 0.98567 1.19757 0.93596 0.95443 1.03580 1.20712 1.00518 0.93365 1.01951 1.20778 0.99813 0.90537 0.97535 1.18595 0.90172 0.94586 1.05630 1.20488 1.01329 0.96288 0.95309 1.20374 0.78013 0.80171 0.90971 1.90711 1.47882 1.55969 1.46267 1.45869 1.55040 1.27359 1.09645 1.21475 0.99380 0.95725 0.82711 1.23870 0.95165 0.87200 0.92969 1.86569 1.87239 1.36669 1.24995 1.22329 0.89967 0.95290 0.91305 1.45206 1.31053 1.54005 1.02692 1.18896 1.05887 1.22458 0.87217 0.89798 1.24804 0.98499 1.00498 0.96424 1.69820 1.30081 1.43400 1.13195 0.86078 0.79635 0.79591 0.80217 1.21378 1.21588 1.20561 1.22741 0.88722 1.00181 0.87219 0.92868 0.92705 0.88332 0.85628 0.86045 0.91533 0.91479 0.91815 0.85322 0.87766 0.87934 0.77157 0.88911 0.91649 0.79112 0.93401 0.93574 0.93602 0.94901 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -3.84 9.63 -19.44 -0.19 -4.03 16 3 C 0.14 1.78 6.66 -39.22 -0.26 1.52 16 4 C -0.21 -2.31 9.04 -39.43 -0.36 -2.67 16 5 C -0.08 -0.89 9.69 -39.61 -0.38 -1.27 16 6 C -0.12 -1.40 5.88 -104.60 -0.62 -2.02 16 7 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 8 C -0.07 -0.86 9.33 -39.60 -0.37 -1.23 16 9 C -0.09 -1.18 4.39 -104.48 -0.46 -1.64 16 10 C -0.09 -1.14 5.55 -29.03 -0.16 -1.30 16 11 C 0.52 8.33 7.82 -10.99 -0.09 8.24 16 12 O -0.53 -10.89 16.03 5.56 0.09 -10.80 16 13 N -0.73 -10.92 5.32 -60.29 -0.32 -11.24 16 14 C 0.13 2.40 5.32 -4.04 -0.02 2.38 16 15 C 0.05 0.95 1.74 -90.04 -0.16 0.79 16 16 O -0.55 -9.07 13.56 -35.23 -0.48 -9.54 16 17 C 0.14 2.95 8.10 -8.50 -0.07 2.88 16 18 N -0.60 -15.46 3.57 -184.54 -0.66 -16.12 16 19 C -0.22 -6.11 10.75 -15.06 -0.16 -6.27 16 20 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 21 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 22 N -0.92 -26.95 11.51 55.49 0.64 -26.31 16 23 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.14 3.20 6.81 -8.44 -0.06 3.14 16 28 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.06 0.49 8.08 -51.93 -0.42 0.08 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.10 1.06 7.69 -51.93 -0.40 0.66 16 38 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 39 H 0.39 4.67 7.24 -40.82 -0.30 4.37 16 40 H 0.09 2.08 7.94 -51.93 -0.41 1.66 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.36 4.37 7.50 45.56 0.34 4.71 16 43 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 1.88 7.10 -51.93 -0.37 1.51 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -35.69 391.29 -8.39 -44.08 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.45 Total: 7.94 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.90 Total: 2.94 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.34 Total: -53.67 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.58 Total: -24.37 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.69 -8.39 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724459708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.757 kcal (2) G-P(sol) polarization free energy of solvation -35.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds