Wall clock time and date at job start Tue Mar 31 2020 17:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35903 * 116.99699 * 2 1 4 4 C 1.38746 * 120.05537 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94329 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.05617 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94664 * 180.02562 * 6 5 4 8 8 C 1.38254 * 120.11056 * 359.75216 * 6 5 4 9 9 C 1.38166 * 120.05449 * 0.50186 * 8 6 5 10 10 C 1.50696 * 120.02656 * 179.77802 * 9 8 6 11 11 C 1.50709 * 109.46901 * 264.72167 * 10 9 8 12 12 O 1.21282 * 119.99617 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00019 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99718 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46749 * 180.02562 * 14 13 11 16 16 O 1.42904 * 113.41731 * 51.80016 * 15 14 13 17 17 C 1.53504 * 114.20366 * 185.00010 * 15 14 13 18 18 N 1.47066 * 88.04678 * 87.54725 * 17 15 14 19 19 C 1.36941 * 136.05541 * 207.05070 * 18 17 15 20 20 H 1.07998 * 119.99878 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99593 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00459 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99771 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46679 * 89.99981 * 23 21 19 25 25 H 1.48491 * 109.47288 * 209.99798 * 23 21 19 26 26 H 1.48502 * 109.47105 * 330.00301 * 23 21 19 27 27 C 1.47064 * 87.88659 * 27.09306 * 18 17 15 28 28 H 1.09002 * 109.46948 * 299.99831 * 1 2 3 29 29 H 1.08999 * 109.46853 * 60.00303 * 1 2 3 30 30 H 1.09000 * 109.46619 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.02934 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.97083 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47363 * 90.00210 * 7 6 5 34 34 H 1.09002 * 109.46773 * 210.00627 * 7 6 5 35 35 H 1.09002 * 109.46983 * 329.99827 * 7 6 5 36 36 H 1.08001 * 119.97311 * 180.25667 * 8 6 5 37 37 H 1.09000 * 109.47431 * 144.72721 * 10 9 8 38 38 H 1.08998 * 109.47721 * 24.71768 * 10 9 8 39 39 H 0.96999 * 120.00738 * 359.97438 * 13 11 10 40 40 H 1.08995 * 109.47151 * 60.00171 * 14 13 11 41 41 H 1.09002 * 109.47077 * 299.99631 * 14 13 11 42 42 H 0.96700 * 113.99553 * 313.20347 * 16 15 14 43 43 H 1.09002 * 113.46865 * 332.73821 * 17 15 14 44 44 H 1.08999 * 113.46581 * 202.35597 * 17 15 14 45 45 H 0.97000 * 120.00117 * 180.02562 * 22 21 19 46 46 H 1.08999 * 113.47096 * 87.65665 * 27 18 17 47 47 H 1.09005 * 113.46966 * 218.04058 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6759 0.0016 7 6 3.9859 5.0186 0.0028 8 6 4.0559 2.5172 0.0068 9 6 3.4311 1.2849 0.0010 10 6 4.2538 0.0223 0.0015 11 6 4.4248 -0.4665 -1.4138 12 8 3.9280 0.1501 -2.3324 13 7 5.1298 -1.5887 -1.6586 14 6 5.2956 -2.0640 -3.0345 15 6 6.1298 -3.3465 -3.0338 16 8 5.6379 -4.3436 -2.1360 17 6 6.4735 -3.8745 -4.4336 18 7 7.6619 -3.0085 -4.4136 19 6 8.4414 -2.3822 -5.3492 20 1 8.2117 -2.4847 -6.3995 21 6 9.5266 -1.6155 -4.9476 22 7 9.8068 -1.4910 -3.6676 23 14 10.5896 -0.7605 -6.2238 24 1 10.0471 0.5957 -6.4914 25 1 11.9795 -0.6459 -5.7140 26 1 10.5869 -1.5516 -7.4806 27 6 7.6455 -3.1120 -2.9467 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 0.2128 2.3203 0.0014 32 1 1.3339 4.5114 0.0019 33 1 4.1506 5.3417 1.0307 34 1 4.9440 4.9386 -0.5109 35 1 3.3581 5.7468 -0.5108 36 1 5.1344 2.5753 0.0114 37 1 3.7466 -0.7417 0.5908 38 1 5.2324 0.2263 0.4361 39 1 5.5275 -2.0817 -0.9240 40 1 5.8029 -1.3005 -3.6240 41 1 4.3169 -2.2679 -3.4688 42 1 5.4224 -4.0077 -1.2552 43 1 5.7448 -3.5941 -5.1943 44 1 6.7116 -4.9381 -4.4500 45 1 10.5650 -0.9550 -3.3869 46 1 8.1957 -3.9725 -2.5660 47 1 7.9144 -2.1835 -2.4429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724459708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:14 Heat of formation + Delta-G solvation = -64.716313 kcal Electronic energy + Delta-G solvation = -28902.848193 eV Core-core repulsion = 24859.014060 eV Total energy + Delta-G solvation = -4043.834133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.55291 -40.98616 -39.93067 -38.54403 -36.69190 -35.24315 -34.26616 -34.05912 -32.50000 -30.33022 -29.13757 -28.71119 -27.33575 -26.67454 -26.51943 -24.25965 -23.08317 -22.15586 -21.27425 -20.63442 -19.09293 -18.79531 -18.60562 -17.65433 -17.49227 -17.13090 -16.63361 -16.38117 -16.34054 -15.90795 -15.76142 -15.31300 -15.24422 -15.00138 -14.70622 -14.56291 -14.34456 -14.30464 -14.10744 -13.73351 -13.41806 -13.17888 -12.99903 -12.97391 -12.89783 -12.81208 -12.75098 -12.65051 -12.22296 -12.20528 -11.93853 -11.73795 -11.69239 -11.53975 -11.04282 -10.88652 -10.66338 -10.13131 -9.79830 -9.00531 -8.90976 -7.95300 -5.29830 0.34802 0.49114 1.44519 1.46849 1.54828 1.68790 2.12239 2.41609 2.41831 2.82268 3.07767 3.25793 3.43983 3.52141 3.65965 3.83916 3.85013 3.98760 4.03632 4.22488 4.32717 4.38360 4.39900 4.45108 4.46198 4.59162 4.66196 4.69692 4.75974 4.79469 4.80129 4.83716 4.87313 4.90921 5.11324 5.15197 5.20135 5.30401 5.34721 5.37665 5.44479 5.44994 5.69260 5.84965 5.90122 6.45921 6.52946 6.78358 6.85747 7.27320 7.53737 8.51457 9.21802 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012244 B = 0.003030 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.220174 B = 9238.223319 C =10907.936351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.332 6.332 3 C 0.119 3.881 4 C -0.212 4.212 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.107 4.107 8 C -0.088 4.088 9 C -0.114 4.114 10 C -0.084 4.084 11 C 0.517 3.483 12 O -0.580 6.580 13 N -0.715 5.715 14 C 0.145 3.855 15 C 0.091 3.909 16 O -0.545 6.545 17 C 0.132 3.868 18 N -0.631 5.631 19 C -0.232 4.232 20 H 0.087 0.913 21 C -0.062 4.062 22 N -0.947 5.947 23 Si 0.980 3.020 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.268 1.268 27 C 0.138 3.862 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.412 0.588 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.386 0.614 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.250 0.750 46 H 0.022 0.978 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.655 6.753 14.564 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.074 3.926 4 C -0.230 4.230 5 C -0.105 4.105 6 C -0.135 4.135 7 C -0.164 4.164 8 C -0.106 4.106 9 C -0.115 4.115 10 C -0.124 4.124 11 C 0.305 3.695 12 O -0.459 6.459 13 N -0.369 5.369 14 C 0.020 3.980 15 C 0.048 3.952 16 O -0.352 6.352 17 C 0.006 3.994 18 N -0.358 5.358 19 C -0.359 4.359 20 H 0.105 0.895 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.808 3.192 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.192 1.192 27 C 0.011 3.989 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.133 0.867 31 H 0.166 0.834 32 H 0.166 0.834 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.249 0.751 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.236 0.764 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.039 0.961 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.584 6.780 13.258 23.814 hybrid contribution 0.898 0.448 -0.075 1.006 sum -17.686 7.228 13.184 23.213 Atomic orbital electron populations 1.23290 0.76787 1.05327 1.01976 1.86017 1.23149 1.26831 1.88604 1.18973 0.91887 0.85036 0.96695 1.21459 1.00967 0.92033 1.08558 1.21131 0.93980 0.97795 0.97592 1.20116 0.94222 0.96122 1.03054 1.20745 1.00207 0.92385 1.03013 1.20998 1.00266 0.91083 0.98253 1.18837 0.90867 0.95093 1.06731 1.20502 1.02746 0.96571 0.92538 1.21126 0.76747 0.79434 0.92205 1.90684 1.49853 1.57315 1.48089 1.45736 1.54859 1.27514 1.08822 1.21082 0.98717 0.94069 0.84110 1.23115 0.92470 0.87424 0.92199 1.86534 1.86686 1.35666 1.26266 1.22483 0.88744 0.95036 0.93169 1.45465 1.32070 1.54808 1.03496 1.19273 1.06165 1.22418 0.88074 0.89498 1.25630 0.99956 1.01573 0.98349 1.69989 1.30434 1.44291 1.14832 0.85065 0.77518 0.78347 0.78319 1.21365 1.21754 1.19228 1.22696 0.91731 0.98434 0.86005 0.91034 0.92757 0.86651 0.83435 0.83449 0.90028 0.92050 0.90634 0.85077 0.85566 0.85764 0.75085 0.93229 0.91089 0.76385 0.92199 0.92845 0.94134 0.96060 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -7.79 9.63 -92.46 -0.89 -8.68 16 3 C 0.12 3.01 6.66 22.50 0.15 3.16 16 4 C -0.21 -4.46 9.04 22.37 0.20 -4.26 16 5 C -0.09 -1.73 9.69 22.25 0.22 -1.51 16 6 C -0.13 -2.95 5.88 -19.85 -0.12 -3.06 16 7 C -0.11 -1.75 10.01 71.24 0.71 -1.03 16 8 C -0.09 -2.19 9.33 22.26 0.21 -1.98 16 9 C -0.11 -2.99 4.39 -19.77 -0.09 -3.08 16 10 C -0.08 -1.95 5.55 29.10 0.16 -1.79 16 11 C 0.52 16.44 7.82 87.66 0.69 17.12 16 12 O -0.58 -24.16 16.03 -3.04 -0.05 -24.21 16 13 N -0.72 -20.98 5.32 -463.05 -2.46 -23.44 16 14 C 0.15 5.31 5.32 86.38 0.46 5.77 16 15 C 0.09 3.36 1.74 -10.42 -0.02 3.34 16 16 O -0.55 -16.58 13.56 -148.98 -2.02 -18.60 16 17 C 0.13 5.55 8.10 83.18 0.67 6.22 16 18 N -0.63 -32.83 3.57 -738.18 -2.63 -35.46 16 19 C -0.23 -13.18 10.75 84.03 0.90 -12.28 16 20 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 21 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 22 N -0.95 -56.86 11.51 21.65 0.25 -56.61 16 23 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 27 C 0.14 6.47 6.81 83.22 0.57 7.04 16 28 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 29 H 0.05 0.78 7.66 -2.39 -0.02 0.76 16 30 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.15 2.28 6.30 -2.91 -0.02 2.26 16 32 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 35 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 36 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.13 2.33 7.69 -2.39 -0.02 2.31 16 38 H 0.12 2.28 8.05 -2.39 -0.02 2.26 16 39 H 0.41 9.05 7.24 -92.71 -0.67 8.38 16 40 H 0.05 2.29 7.94 -2.39 -0.02 2.27 16 41 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.39 8.07 7.50 -74.06 -0.56 7.52 16 43 H 0.06 2.37 8.12 -2.39 -0.02 2.35 16 44 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.05 2.60 7.10 -2.38 -0.02 2.58 16 Total: -1.00 -78.99 391.29 0.29 -78.70 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -0.23 Total: 28.07 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 6.30 Total: 12.01 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -4.85 Total: -115.51 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -2.96 Total: -51.49 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -78.99 0.29 -78.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724459708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.982 kcal (2) G-P(sol) polarization free energy of solvation -78.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds