Wall clock time and date at job start Tue Mar 31 2020 17:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.37971 * 119.82632 * 2 1 4 4 C 1.39243 * 120.24075 * 179.97438 * 3 2 1 5 5 C 1.38924 * 118.87424 * 0.37808 * 4 3 2 6 6 C 1.37692 * 120.79009 * 359.47500 * 5 4 3 7 7 C 1.38250 * 119.82086 * 180.02562 * 2 1 3 8 8 C 1.50694 * 120.11889 * 359.80973 * 7 2 1 9 9 C 1.51647 * 107.03218 * 179.44613 * 5 4 3 10 10 H 1.09004 * 110.93461 * 226.41341 * 9 5 4 11 11 C 1.50700 * 110.93955 * 102.76983 * 9 5 4 12 12 O 1.21280 * 120.00133 * 359.97438 * 11 9 5 13 13 N 1.34769 * 120.00024 * 179.97438 * 11 9 5 14 14 C 1.46505 * 120.00143 * 180.02562 * 13 11 9 15 15 C 1.53004 * 109.47126 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.46839 * 294.99415 * 15 14 13 17 17 C 1.53002 * 109.46769 * 174.99986 * 15 14 13 18 18 O 1.42897 * 109.46967 * 304.99536 * 17 15 14 19 19 N 1.46498 * 109.47065 * 54.99689 * 15 14 13 20 20 C 1.36936 * 119.99972 * 204.99746 * 19 15 14 21 21 H 1.08002 * 119.99631 * 0.02562 * 20 19 15 22 22 C 1.38806 * 120.00202 * 180.02562 * 20 19 15 23 23 N 1.31624 * 120.00103 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00201 * 179.72570 * 22 20 19 25 25 H 1.48494 * 109.47228 * 180.27680 * 24 22 20 26 26 H 1.48500 * 109.47000 * 300.27564 * 24 22 20 27 27 H 1.48493 * 109.46907 * 60.27455 * 24 22 20 28 28 C 1.54701 * 101.92753 * 344.60889 * 9 5 4 29 29 O 1.36129 * 129.89511 * 181.00220 * 4 3 2 30 30 H 1.09001 * 109.46948 * 269.97365 * 1 2 3 31 31 H 1.08995 * 109.47079 * 29.97756 * 1 2 3 32 32 H 1.09004 * 109.46800 * 149.97735 * 1 2 3 33 33 H 1.08000 * 119.88011 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.01610 * 180.31370 * 6 5 4 35 35 H 1.09001 * 109.47344 * 270.02047 * 8 7 2 36 36 H 1.09006 * 109.47338 * 30.02327 * 8 7 2 37 37 H 1.08997 * 109.47129 * 150.02190 * 8 7 2 38 38 H 0.97000 * 120.00305 * 359.97438 * 13 11 9 39 39 H 1.08992 * 109.47090 * 59.99707 * 14 13 11 40 40 H 1.08999 * 109.46645 * 299.99721 * 14 13 11 41 41 H 1.08997 * 109.47349 * 64.99678 * 17 15 14 42 42 H 1.09002 * 109.46691 * 185.00109 * 17 15 14 43 43 H 0.96699 * 113.99870 * 180.02562 * 18 17 15 44 44 H 0.97001 * 120.00384 * 25.00562 * 19 15 14 45 45 H 0.97005 * 119.99717 * 359.71965 * 23 22 20 46 46 H 1.09001 * 110.74655 * 143.62127 * 28 9 5 47 47 H 1.09001 * 110.75003 * 266.96850 * 28 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1969 0.0000 4 6 3.5857 1.2070 0.0005 5 6 4.2653 -0.0046 -0.0070 6 6 3.5785 -1.1980 -0.0040 7 6 2.1945 -1.1994 -0.0005 8 6 1.4397 -2.5037 0.0032 9 6 5.7471 0.3174 -0.0184 10 1 6.2708 -0.2846 -0.7611 11 6 6.3506 0.1255 1.3491 12 8 5.6553 -0.2413 2.2727 13 7 7.6628 0.3613 1.5457 14 6 8.2496 0.1742 2.8750 15 6 9.7420 0.5076 2.8253 16 1 10.2529 -0.2081 2.1813 17 6 10.3285 0.4332 4.2365 18 8 9.5829 1.2858 5.1077 19 7 9.9227 1.8601 2.2920 20 6 11.0985 2.2032 1.6797 21 1 11.8924 1.4766 1.5895 22 6 11.2700 3.4848 1.1749 23 7 10.3026 4.3705 1.2852 24 14 12.8768 3.9552 0.3463 25 1 12.8094 5.3709 -0.0966 26 1 13.9963 3.7901 1.3079 27 1 13.1019 3.0783 -0.8307 28 6 5.7465 1.8120 -0.4177 29 8 4.4512 2.2576 0.0189 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6485 2.1295 0.0004 34 1 4.1196 -2.1327 -0.0048 35 1 1.2603 -2.8168 1.0318 36 1 0.4861 -2.3731 -0.5084 37 1 2.0267 -3.2647 -0.5110 38 1 8.2190 0.6543 0.8070 39 1 8.1185 -0.8617 3.1875 40 1 7.7538 0.8340 3.5871 41 1 10.2742 -0.5934 4.5988 42 1 11.3693 0.7564 4.2149 43 1 9.9001 1.2888 6.0212 44 1 9.2096 2.5126 2.3728 45 1 9.4683 4.1264 1.7157 46 1 6.5367 2.3515 0.1045 47 1 5.8496 1.9234 -1.4971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734371912.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:24 Heat of formation + Delta-G solvation = -82.293978 kcal Electronic energy + Delta-G solvation = -29054.577372 eV Core-core repulsion = 25009.981015 eV Total energy + Delta-G solvation = -4044.596358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.47219 -39.12775 -38.13990 -37.20418 -35.04992 -33.76422 -33.33115 -32.10264 -31.65790 -30.78826 -28.10739 -27.11475 -26.39401 -25.51842 -23.61862 -23.15441 -22.30482 -20.66520 -20.34260 -19.86171 -17.82712 -17.41118 -17.06063 -16.73812 -16.33601 -15.99195 -15.70395 -15.11176 -14.77757 -14.51072 -14.33144 -14.13367 -13.99510 -13.78730 -13.72926 -13.47475 -13.25759 -13.03698 -12.94512 -12.78117 -12.45206 -12.16333 -12.07647 -11.96713 -11.62889 -11.45538 -11.44061 -10.94913 -10.89318 -10.80025 -10.68926 -10.47697 -10.06168 -9.66683 -9.52219 -9.23197 -9.03071 -8.77606 -8.71270 -7.98139 -7.15351 -6.17865 -3.20023 1.20487 1.35975 2.75348 3.27239 3.31653 3.45171 3.48210 3.66271 3.74636 4.19826 4.46651 4.57519 4.71825 4.77711 4.82645 4.91118 4.93157 5.06839 5.15588 5.25069 5.30654 5.34126 5.37975 5.43985 5.50237 5.51414 5.54836 5.59375 5.63875 5.70162 5.79309 5.85029 5.91700 5.92414 6.06629 6.21852 6.24134 6.36565 6.38538 6.51266 6.61980 6.62946 6.77892 7.17739 7.69000 7.80561 8.10658 8.45898 8.67534 9.11615 9.98470 10.14037 11.29430 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.002861 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.866379 B = 9783.451110 C =10806.350147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.052 4.052 3 C -0.140 4.140 4 C 0.115 3.885 5 C -0.147 4.147 6 C -0.048 4.048 7 C -0.122 4.122 8 C -0.108 4.108 9 C -0.102 4.102 10 H 0.121 0.879 11 C 0.520 3.480 12 O -0.535 6.535 13 N -0.713 5.713 14 C 0.118 3.882 15 C 0.172 3.828 16 H 0.067 0.933 17 C 0.059 3.941 18 O -0.562 6.562 19 N -0.724 5.724 20 C -0.340 4.340 21 H 0.064 0.936 22 C -0.039 4.039 23 N -0.937 5.937 24 Si 1.079 2.921 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.295 1.295 28 C 0.063 3.937 29 O -0.298 6.298 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.408 0.592 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.028 0.972 42 H 0.049 0.951 43 H 0.365 0.635 44 H 0.372 0.628 45 H 0.257 0.743 46 H 0.117 0.883 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.107 -12.761 -3.829 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.052 4.052 3 C -0.158 4.158 4 C 0.069 3.931 5 C -0.149 4.149 6 C -0.067 4.067 7 C -0.122 4.122 8 C -0.165 4.165 9 C -0.123 4.123 10 H 0.138 0.862 11 C 0.304 3.696 12 O -0.411 6.411 13 N -0.365 5.365 14 C -0.006 4.006 15 C 0.061 3.939 16 H 0.085 0.915 17 C -0.022 4.022 18 O -0.365 6.365 19 N -0.367 5.367 20 C -0.471 4.471 21 H 0.082 0.918 22 C -0.238 4.238 23 N -0.581 5.581 24 Si 0.909 3.091 25 H -0.210 1.210 26 H -0.224 1.224 27 H -0.222 1.222 28 C -0.012 4.012 29 O -0.211 6.211 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.244 0.756 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.210 0.790 44 H 0.205 0.795 45 H 0.069 0.931 46 H 0.135 0.865 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.944 -11.563 -4.460 18.655 hybrid contribution 0.170 -1.142 1.136 1.619 sum -13.774 -12.705 -3.324 19.031 Atomic orbital electron populations 1.20855 0.90798 1.02895 1.02582 1.19382 0.95839 0.91581 0.98380 1.20008 0.89744 0.98518 1.07569 1.19527 0.91466 0.86177 0.95901 1.20116 0.92906 0.94101 1.07729 1.20063 0.93028 0.96349 0.97217 1.19526 0.92997 0.94984 1.04681 1.20744 0.99732 0.93759 1.02225 1.21559 0.94410 0.98997 0.97335 0.86160 1.20046 0.82207 0.77823 0.89500 1.90693 1.60729 1.46244 1.43483 1.45977 1.08900 1.68237 1.13434 1.21572 0.94534 1.00720 0.83784 1.20523 0.91902 0.89823 0.91681 0.91543 1.23016 0.95769 0.90961 0.92460 1.86550 1.58785 1.68854 1.22349 1.42373 1.17421 1.08023 1.68923 1.20002 0.93807 0.99049 1.34216 0.91805 1.25743 1.05004 0.92043 1.00996 1.70878 1.05850 1.35723 1.45684 0.83262 0.73999 0.76167 0.75628 1.21036 1.22364 1.22250 1.23883 0.84615 0.91475 1.01267 1.86876 1.19701 1.32408 1.82142 0.90899 0.91478 0.90941 0.85490 0.86023 0.91365 0.91322 0.91828 0.75578 0.92013 0.90665 0.95414 0.93222 0.79007 0.79461 0.93147 0.86477 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.59 36.01 0.35 -0.58 16 2 C -0.05 -0.60 5.87 -104.71 -0.61 -1.22 16 3 C -0.14 -1.88 9.71 -39.31 -0.38 -2.26 16 4 C 0.11 1.79 7.04 -38.95 -0.27 1.51 16 5 C -0.15 -2.19 4.93 -104.10 -0.51 -2.70 16 6 C -0.05 -0.64 9.70 -39.72 -0.39 -1.03 16 7 C -0.12 -1.43 5.89 -104.56 -0.62 -2.04 16 8 C -0.11 -0.91 9.61 36.00 0.35 -0.56 16 9 C -0.10 -1.43 3.52 -91.56 -0.32 -1.75 16 10 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 11 C 0.52 8.93 7.08 -10.99 -0.08 8.85 16 12 O -0.53 -11.08 16.14 5.56 0.09 -10.99 16 13 N -0.71 -11.92 5.32 -60.29 -0.32 -12.24 16 14 C 0.12 2.10 5.12 -4.04 -0.02 2.08 16 15 C 0.17 3.24 2.84 -67.93 -0.19 3.04 16 16 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 17 C 0.06 1.03 6.86 37.16 0.25 1.29 16 18 O -0.56 -10.09 12.64 -35.23 -0.45 -10.53 16 19 N -0.72 -16.86 4.51 -53.43 -0.24 -17.10 16 20 C -0.34 -8.86 9.93 -15.06 -0.15 -9.00 16 21 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 22 C -0.04 -1.08 5.50 -17.43 -0.10 -1.17 16 23 N -0.94 -27.84 13.70 55.49 0.76 -27.08 16 24 Si 1.08 24.76 29.92 -169.99 -5.09 19.67 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.30 -6.58 7.11 56.52 0.40 -6.17 16 27 H -0.30 -6.40 7.11 56.52 0.40 -6.00 16 28 C 0.06 0.88 7.54 38.05 0.29 1.17 16 29 O -0.30 -4.92 11.10 -20.15 -0.22 -5.15 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.06 16 32 H 0.07 0.47 5.94 -51.93 -0.31 0.16 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.46 5.94 -51.93 -0.31 0.15 16 37 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 38 H 0.41 6.64 8.14 -40.82 -0.33 6.31 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.53 7.39 -51.93 -0.38 1.15 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.37 4.75 9.12 45.56 0.42 5.16 16 44 H 0.37 9.39 6.63 -40.82 -0.27 9.12 16 45 H 0.26 7.63 6.77 -40.82 -0.28 7.36 16 46 H 0.12 1.76 7.85 -51.93 -0.41 1.35 16 47 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -34.50 388.33 -8.17 -42.67 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: -6.14 Total: 19.27 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.41 Total: -4.37 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.20 Total: -56.42 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.58 Total: -26.67 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.09 Total: 19.67 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.50 -8.17 -42.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734371912.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.623 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds