Wall clock time and date at job start Tue Mar 31 2020 20:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34259 * 125.80363 * 2 1 4 4 H 0.96999 * 125.38764 * 359.96675 * 3 2 1 5 5 C 1.37807 * 109.23151 * 180.02562 * 3 2 1 6 6 C 1.46693 * 125.84732 * 180.02562 * 5 3 2 7 7 O 1.21724 * 119.99619 * 286.15088 * 6 5 3 8 8 N 1.34768 * 120.00247 * 106.15392 * 6 5 3 9 9 C 1.36877 * 120.00017 * 175.83012 * 8 6 5 10 10 H 1.08003 * 119.99695 * 228.14015 * 9 8 6 11 11 C 1.39011 * 120.00142 * 48.13717 * 9 8 6 12 12 N 1.31387 * 120.00016 * 6.38764 * 11 9 8 13 13 Si 1.86805 * 119.99855 * 186.39016 * 11 9 8 14 14 H 1.48500 * 109.46785 * 269.99669 * 13 11 9 15 15 H 1.48492 * 109.47263 * 29.99714 * 13 11 9 16 16 H 1.48495 * 109.47059 * 150.00366 * 13 11 9 17 17 C 1.46504 * 120.00263 * 355.82776 * 8 6 5 18 18 C 1.52992 * 117.50112 * 193.60825 * 17 8 6 19 19 C 1.53001 * 117.50333 * 124.94458 * 17 8 6 20 20 C 1.36444 * 108.30535 * 0.26054 * 5 3 2 21 21 C 1.50695 * 126.50156 * 179.73858 * 20 5 3 22 22 C 1.38313 * 125.79420 * 180.02562 * 2 1 3 23 23 C 1.47242 * 126.47130 * 359.96883 * 22 2 1 24 24 O 1.21537 * 119.99558 * 90.03133 * 23 22 2 25 25 O 1.34757 * 120.00566 * 270.02878 * 23 22 2 26 26 C 1.45198 * 117.00300 * 179.97438 * 25 23 22 27 27 C 1.53003 * 109.47064 * 150.00391 * 26 25 23 28 28 C 1.52998 * 109.47430 * 270.00088 * 26 25 23 29 29 H 1.08996 * 109.47115 * 90.01932 * 1 2 3 30 30 H 1.08999 * 109.47249 * 210.02485 * 1 2 3 31 31 H 1.09003 * 109.46389 * 330.02037 * 1 2 3 32 32 H 0.97000 * 119.99723 * 174.99528 * 12 11 9 33 33 H 1.09003 * 115.54730 * 339.27615 * 17 8 6 34 34 H 1.09006 * 117.50005 * 359.97438 * 18 17 8 35 35 H 1.09001 * 117.50140 * 145.01867 * 18 17 8 36 36 H 1.08989 * 117.50206 * 214.98495 * 19 17 8 37 37 H 1.08998 * 117.49583 * 359.97438 * 19 17 8 38 38 H 1.08996 * 109.47119 * 90.00171 * 21 20 5 39 39 H 1.09000 * 109.47549 * 210.00206 * 21 20 5 40 40 H 1.08998 * 109.47061 * 330.00744 * 21 20 5 41 41 H 1.08997 * 109.47510 * 30.00432 * 26 25 23 42 42 H 1.08998 * 109.47619 * 59.99954 * 27 26 25 43 43 H 1.09004 * 109.47232 * 180.02562 * 27 26 25 44 44 H 1.08998 * 109.46898 * 299.99684 * 27 26 25 45 45 H 1.08996 * 109.47617 * 300.00113 * 28 26 25 46 46 H 1.08997 * 109.46927 * 60.00138 * 28 26 25 47 47 H 1.08999 * 109.47467 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.0889 0.0000 4 1 1.9797 2.0071 -0.0005 5 6 3.6133 0.6958 -0.0006 6 6 4.7758 1.5905 -0.0002 7 8 5.0790 2.1947 -1.0125 8 7 5.5082 1.7433 1.1207 9 6 6.6415 2.5105 1.0984 10 1 7.5584 2.1319 1.5256 11 6 6.6124 3.7770 0.5261 12 7 5.4723 4.2884 0.1200 13 14 8.1944 4.7518 0.3342 14 1 8.4173 5.5773 1.5484 15 1 9.3337 3.8164 0.1556 16 1 8.0895 5.6368 -0.8535 17 6 5.0913 1.0885 2.3632 18 6 5.7620 1.5431 3.6609 19 6 6.1069 0.1791 3.0577 20 6 3.6545 -0.6680 -0.0068 21 6 4.8924 -1.5273 -0.0152 22 6 2.3160 -1.1219 -0.0005 23 6 1.8675 -2.5243 -0.0005 24 8 1.6825 -3.1031 -1.0531 25 8 1.6621 -3.1662 1.1665 26 6 1.2199 -4.5471 1.0904 27 6 1.7317 -5.3144 2.3112 28 6 -0.3092 -4.5923 1.0640 29 1 -0.3633 -0.0003 -1.0276 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3632 0.8902 0.5136 32 1 5.4403 5.1991 -0.2123 33 1 4.0411 0.8007 2.4134 34 1 6.5139 2.3291 3.5903 35 1 5.1533 1.5540 4.5650 36 1 5.7249 -0.7066 3.5652 37 1 7.0851 0.0677 2.5901 38 1 5.1946 -1.7391 1.0104 39 1 4.6816 -2.4633 -0.5325 40 1 5.6966 -1.0010 -0.5295 41 1 1.6127 -5.0050 0.1826 42 1 1.3389 -4.8567 3.2191 43 1 1.4001 -6.3512 2.2539 44 1 2.8210 -5.2823 2.3301 45 1 -0.7020 -4.1345 1.9718 46 1 -0.6738 -4.0456 0.1943 47 1 -0.6411 -5.6289 1.0064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067686625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:40 Heat of formation + Delta-G solvation = -45.971685 kcal Electronic energy + Delta-G solvation = -30096.966570 eV Core-core repulsion = 26053.945265 eV Total energy + Delta-G solvation = -4043.021305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.24324 -39.93674 -38.22606 -36.55289 -35.95081 -33.22801 -32.90556 -32.63919 -31.35738 -30.78618 -27.90775 -27.47017 -26.42863 -24.71698 -23.73094 -21.69274 -21.40980 -21.14188 -20.32461 -19.63472 -18.87394 -17.56057 -17.17689 -16.13661 -15.99388 -15.72174 -15.16621 -14.92841 -14.54998 -14.23337 -14.15668 -13.77307 -13.67686 -13.38197 -13.19882 -12.89140 -12.84368 -12.64063 -12.53592 -12.48266 -12.28568 -12.05436 -11.91274 -11.84009 -11.75128 -11.18038 -11.08212 -11.04888 -10.99207 -10.78924 -10.71773 -10.55561 -10.33251 -10.24074 -9.98851 -9.72469 -8.81335 -8.46392 -8.29375 -7.49419 -7.03489 -6.15562 -4.02318 2.21761 2.35466 2.64298 3.09868 3.22882 3.31958 3.34012 3.39794 4.21415 4.25089 4.64163 4.76049 4.78238 4.85386 4.90809 4.98999 5.00515 5.18736 5.20973 5.32795 5.50650 5.52286 5.53725 5.59024 5.61233 5.66318 5.69960 5.80493 5.82394 5.84914 5.90297 5.96238 6.06318 6.18545 6.25187 6.28213 6.39426 6.48339 6.50051 6.67181 6.77744 6.97060 7.11262 7.30360 7.54315 7.76656 7.98247 8.21962 8.97159 9.04240 9.53236 10.18983 10.90421 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.003508 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.369029 B = 7980.260731 C = 8655.916030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.067 3.933 3 N -0.512 5.512 4 H 0.423 0.577 5 C 0.016 3.984 6 C 0.536 3.464 7 O -0.508 6.508 8 N -0.410 5.410 9 C -0.339 4.339 10 H 0.080 0.920 11 C 0.063 3.937 12 N -0.828 5.828 13 Si 0.916 3.084 14 H -0.280 1.280 15 H -0.270 1.270 16 H -0.284 1.284 17 C 0.081 3.919 18 C -0.178 4.178 19 C -0.202 4.202 20 C -0.093 4.093 21 C -0.082 4.082 22 C -0.208 4.208 23 C 0.556 3.444 24 O -0.508 6.508 25 O -0.345 6.345 26 C 0.076 3.924 27 C -0.149 4.149 28 C -0.169 4.169 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.263 0.737 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.285 -13.064 6.498 17.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 N -0.106 5.106 4 H 0.261 0.739 5 C -0.098 4.098 6 C 0.321 3.679 7 O -0.383 6.383 8 N -0.130 5.130 9 C -0.467 4.467 10 H 0.098 0.902 11 C -0.147 4.147 12 N -0.462 5.462 13 Si 0.743 3.257 14 H -0.206 1.206 15 H -0.195 1.195 16 H -0.210 1.210 17 C -0.025 4.025 18 C -0.216 4.216 19 C -0.241 4.241 20 C -0.099 4.099 21 C -0.139 4.139 22 C -0.216 4.216 23 C 0.399 3.601 24 O -0.395 6.395 25 O -0.262 6.262 26 C 0.021 3.979 27 C -0.206 4.206 28 C -0.226 4.226 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.280 -12.624 5.474 17.176 hybrid contribution 0.367 0.882 -0.111 0.962 sum -9.913 -11.742 5.363 16.276 Atomic orbital electron populations 1.20396 0.87633 1.03453 1.03072 1.20238 0.92930 0.85386 1.06775 1.41614 1.05575 1.08417 1.54981 0.73878 1.20691 0.84225 0.94042 1.10878 1.16848 0.83337 0.83160 0.84548 1.90724 1.70218 1.45069 1.32272 1.42512 1.23848 1.43184 1.03501 1.18923 0.88100 0.96627 1.43018 0.90195 1.25403 0.97137 0.96775 0.95394 1.69860 1.25465 1.14022 1.36853 0.86136 0.82407 0.79599 0.77605 1.20628 1.19472 1.20966 1.21631 0.95016 0.99756 0.86114 1.23115 1.04493 0.98204 0.95778 1.23243 1.01804 0.93556 1.05452 1.19247 0.92742 0.91458 1.06472 1.20178 0.94131 0.97520 1.02053 1.18047 0.93817 0.88220 1.21555 1.20435 0.71933 0.86336 0.81351 1.90803 1.47897 1.67934 1.32891 1.86782 1.77869 1.27022 1.34541 1.22704 0.94897 0.79816 1.00517 1.21876 1.02308 0.99264 0.97149 1.22205 0.94625 1.02829 1.02980 0.90505 0.90380 0.90930 0.92652 0.87823 0.87495 0.89994 0.89789 0.88957 0.91217 0.92643 0.91139 0.89864 0.91394 0.90649 0.91544 0.91547 0.92001 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 10.24 36.01 0.37 -0.63 16 2 C 0.07 1.06 7.21 -81.50 -0.59 0.47 16 3 N -0.51 -9.06 6.01 -5.60 -0.03 -9.09 16 4 H 0.42 6.81 8.96 -40.82 -0.37 6.44 16 5 C 0.02 0.34 5.05 -82.41 -0.42 -0.07 16 6 C 0.54 13.58 6.41 -12.85 -0.08 13.50 16 7 O -0.51 -15.12 14.54 5.17 0.08 -15.04 16 8 N -0.41 -9.98 2.85 -109.20 -0.31 -10.30 16 9 C -0.34 -8.92 7.53 -15.01 -0.11 -9.04 16 10 H 0.08 2.03 7.68 -52.48 -0.40 1.63 16 11 C 0.06 1.72 4.76 -17.46 -0.08 1.64 16 12 N -0.83 -23.69 11.10 55.50 0.62 -23.08 16 13 Si 0.92 21.09 29.56 -169.99 -5.03 16.07 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.08 1.62 5.97 -67.93 -0.41 1.22 16 18 C -0.18 -3.18 9.86 -26.70 -0.26 -3.45 16 19 C -0.20 -3.45 10.17 -26.69 -0.27 -3.72 16 20 C -0.09 -1.81 6.09 -104.09 -0.63 -2.44 16 21 C -0.08 -1.45 10.01 36.00 0.36 -1.08 16 22 C -0.21 -3.67 6.01 -105.03 -0.63 -4.31 16 23 C 0.56 9.25 7.11 34.39 0.24 9.49 16 24 O -0.51 -9.35 16.37 -19.30 -0.32 -9.66 16 25 O -0.34 -4.95 9.89 -40.65 -0.40 -5.35 16 26 C 0.08 0.83 3.19 -26.73 -0.09 0.75 16 27 C -0.15 -1.24 9.57 37.16 0.36 -0.89 16 28 C -0.17 -1.53 9.55 37.16 0.35 -1.18 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.82 7.93 -51.93 -0.41 0.41 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 33 H 0.10 2.00 7.08 -51.93 -0.37 1.64 16 34 H 0.11 2.10 7.14 -51.93 -0.37 1.73 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.23 8.14 -51.94 -0.42 0.81 16 37 H 0.09 1.66 8.03 -51.93 -0.42 1.25 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 40 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 41 H 0.08 0.99 7.16 -51.93 -0.37 0.62 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 398.18 15.07 6.00 6.00 Total: -1.00 -33.63 398.18 -8.61 -42.24 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.32 Total: 7.94 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.89 Total: 0.26 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.27 Total: -42.46 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.64 Total: -30.05 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.63 -8.61 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.731 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds