Wall clock time and date at job start Tue Mar 31 2020 20:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34259 * 125.80363 * 2 1 4 4 H 0.96999 * 125.38764 * 359.96675 * 3 2 1 5 5 C 1.37807 * 109.23151 * 180.02562 * 3 2 1 6 6 C 1.46693 * 125.84732 * 180.02562 * 5 3 2 7 7 O 1.21724 * 119.99619 * 286.15088 * 6 5 3 8 8 N 1.34768 * 120.00247 * 106.15392 * 6 5 3 9 9 C 1.36877 * 120.00017 * 175.83012 * 8 6 5 10 10 H 1.08003 * 119.99695 * 228.14015 * 9 8 6 11 11 C 1.39011 * 120.00142 * 48.13717 * 9 8 6 12 12 N 1.31387 * 120.00016 * 6.38764 * 11 9 8 13 13 Si 1.86805 * 119.99855 * 186.39016 * 11 9 8 14 14 H 1.48500 * 109.46785 * 269.99669 * 13 11 9 15 15 H 1.48492 * 109.47263 * 29.99714 * 13 11 9 16 16 H 1.48495 * 109.47059 * 150.00366 * 13 11 9 17 17 C 1.46504 * 120.00263 * 355.82776 * 8 6 5 18 18 C 1.52992 * 117.50112 * 193.60825 * 17 8 6 19 19 C 1.53001 * 117.50333 * 124.94458 * 17 8 6 20 20 C 1.36444 * 108.30535 * 0.26054 * 5 3 2 21 21 C 1.50695 * 126.50156 * 179.73858 * 20 5 3 22 22 C 1.38313 * 125.79420 * 180.02562 * 2 1 3 23 23 C 1.47242 * 126.47130 * 359.96883 * 22 2 1 24 24 O 1.21537 * 119.99558 * 90.03133 * 23 22 2 25 25 O 1.34757 * 120.00566 * 270.02878 * 23 22 2 26 26 C 1.45198 * 117.00300 * 179.97438 * 25 23 22 27 27 C 1.53003 * 109.47064 * 150.00391 * 26 25 23 28 28 C 1.52998 * 109.47430 * 270.00088 * 26 25 23 29 29 H 1.08996 * 109.47115 * 90.01932 * 1 2 3 30 30 H 1.08999 * 109.47249 * 210.02485 * 1 2 3 31 31 H 1.09003 * 109.46389 * 330.02037 * 1 2 3 32 32 H 0.97000 * 119.99723 * 174.99528 * 12 11 9 33 33 H 1.09003 * 115.54730 * 339.27615 * 17 8 6 34 34 H 1.09006 * 117.50005 * 359.97438 * 18 17 8 35 35 H 1.09001 * 117.50140 * 145.01867 * 18 17 8 36 36 H 1.08989 * 117.50206 * 214.98495 * 19 17 8 37 37 H 1.08998 * 117.49583 * 359.97438 * 19 17 8 38 38 H 1.08996 * 109.47119 * 90.00171 * 21 20 5 39 39 H 1.09000 * 109.47549 * 210.00206 * 21 20 5 40 40 H 1.08998 * 109.47061 * 330.00744 * 21 20 5 41 41 H 1.08997 * 109.47510 * 30.00432 * 26 25 23 42 42 H 1.08998 * 109.47619 * 59.99954 * 27 26 25 43 43 H 1.09004 * 109.47232 * 180.02562 * 27 26 25 44 44 H 1.08998 * 109.46898 * 299.99684 * 27 26 25 45 45 H 1.08996 * 109.47617 * 300.00113 * 28 26 25 46 46 H 1.08997 * 109.46927 * 60.00138 * 28 26 25 47 47 H 1.08999 * 109.47467 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.0889 0.0000 4 1 1.9797 2.0071 -0.0005 5 6 3.6133 0.6958 -0.0006 6 6 4.7758 1.5905 -0.0002 7 8 5.0790 2.1947 -1.0125 8 7 5.5082 1.7433 1.1207 9 6 6.6415 2.5105 1.0984 10 1 7.5584 2.1319 1.5256 11 6 6.6124 3.7770 0.5261 12 7 5.4723 4.2884 0.1200 13 14 8.1944 4.7518 0.3342 14 1 8.4173 5.5773 1.5484 15 1 9.3337 3.8164 0.1556 16 1 8.0895 5.6368 -0.8535 17 6 5.0913 1.0885 2.3632 18 6 5.7620 1.5431 3.6609 19 6 6.1069 0.1791 3.0577 20 6 3.6545 -0.6680 -0.0068 21 6 4.8924 -1.5273 -0.0152 22 6 2.3160 -1.1219 -0.0005 23 6 1.8675 -2.5243 -0.0005 24 8 1.6825 -3.1031 -1.0531 25 8 1.6621 -3.1662 1.1665 26 6 1.2199 -4.5471 1.0904 27 6 1.7317 -5.3144 2.3112 28 6 -0.3092 -4.5923 1.0640 29 1 -0.3633 -0.0003 -1.0276 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3632 0.8902 0.5136 32 1 5.4403 5.1991 -0.2123 33 1 4.0411 0.8007 2.4134 34 1 6.5139 2.3291 3.5903 35 1 5.1533 1.5540 4.5650 36 1 5.7249 -0.7066 3.5652 37 1 7.0851 0.0677 2.5901 38 1 5.1946 -1.7391 1.0104 39 1 4.6816 -2.4633 -0.5325 40 1 5.6966 -1.0010 -0.5295 41 1 1.6127 -5.0050 0.1826 42 1 1.3389 -4.8567 3.2191 43 1 1.4001 -6.3512 2.2539 44 1 2.8210 -5.2823 2.3301 45 1 -0.7020 -4.1345 1.9718 46 1 -0.6738 -4.0456 0.1943 47 1 -0.6411 -5.6289 1.0064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067686625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:39 Heat of formation + Delta-G solvation = -65.477038 kcal Electronic energy + Delta-G solvation = -30097.812386 eV Core-core repulsion = 26053.945265 eV Total energy + Delta-G solvation = -4043.867121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.64878 -41.16529 -39.97174 -37.74680 -37.65499 -34.79686 -34.26321 -33.95414 -32.91457 -32.34742 -29.17728 -28.15685 -28.10587 -26.37976 -25.06248 -23.18051 -22.91998 -22.14274 -21.95747 -20.86195 -20.45676 -19.13005 -18.42923 -17.91587 -17.31865 -16.93209 -16.80932 -16.51700 -16.07512 -15.59268 -15.45338 -15.15364 -14.93035 -14.77261 -14.46567 -14.20770 -14.08973 -14.04323 -13.74136 -13.68186 -13.25975 -13.20547 -13.10147 -13.06205 -12.93463 -12.84695 -12.65699 -12.64600 -12.45676 -12.21091 -12.10081 -11.85539 -11.73467 -11.67875 -11.42711 -11.22435 -10.76887 -10.22765 -9.86807 -8.96182 -8.93607 -8.17753 -6.08821 0.90073 1.07587 1.24225 1.37808 1.44160 1.51686 1.72718 1.99002 2.35850 2.57144 3.11403 3.13947 3.36475 3.75137 3.85668 3.88609 3.98640 4.02212 4.11607 4.16472 4.20778 4.28009 4.34610 4.45984 4.49211 4.64905 4.74059 4.76384 4.83304 4.83966 4.89404 4.91122 4.91896 4.94073 5.01850 5.05892 5.14876 5.21930 5.28787 5.29575 5.46784 5.51094 5.51770 5.68736 5.85307 6.20257 6.41682 6.77038 6.99212 7.12092 7.59896 8.27994 8.87541 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.003508 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.369029 B = 7980.260731 C = 8655.916030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.095 3.905 3 N -0.511 5.511 4 H 0.428 0.572 5 C -0.021 4.021 6 C 0.531 3.469 7 O -0.571 6.571 8 N -0.417 5.417 9 C -0.350 4.350 10 H 0.083 0.917 11 C 0.012 3.988 12 N -0.864 5.864 13 Si 0.976 3.024 14 H -0.262 1.262 15 H -0.265 1.265 16 H -0.294 1.294 17 C 0.053 3.947 18 C -0.169 4.169 19 C -0.176 4.176 20 C -0.089 4.089 21 C -0.077 4.077 22 C -0.234 4.234 23 C 0.566 3.434 24 O -0.532 6.532 25 O -0.346 6.346 26 C 0.064 3.936 27 C -0.144 4.144 28 C -0.165 4.165 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.258 0.742 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.046 0.954 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 -15.038 8.733 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.026 4.026 3 N -0.105 5.105 4 H 0.267 0.733 5 C -0.135 4.135 6 C 0.319 3.681 7 O -0.451 6.451 8 N -0.136 5.136 9 C -0.478 4.478 10 H 0.101 0.899 11 C -0.195 4.195 12 N -0.498 5.498 13 Si 0.801 3.199 14 H -0.187 1.187 15 H -0.189 1.189 16 H -0.220 1.220 17 C -0.053 4.053 18 C -0.207 4.207 19 C -0.214 4.214 20 C -0.096 4.096 21 C -0.134 4.134 22 C -0.241 4.241 23 C 0.410 3.590 24 O -0.421 6.421 25 O -0.262 6.262 26 C 0.010 3.990 27 C -0.201 4.201 28 C -0.222 4.222 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.688 -14.626 7.790 20.278 hybrid contribution 0.737 1.347 -0.742 1.705 sum -10.951 -13.279 7.047 18.599 Atomic orbital electron populations 1.20617 0.83981 1.05459 1.04499 1.20989 0.94828 0.84081 1.02745 1.41582 1.04698 1.09240 1.54971 0.73322 1.20023 0.84403 0.93862 1.15175 1.17322 0.84304 0.82659 0.83862 1.90661 1.72179 1.47899 1.34331 1.42685 1.23251 1.42782 1.04926 1.19188 0.89178 0.96847 1.42551 0.89938 1.26244 0.99939 0.98054 0.95224 1.69999 1.27439 1.13991 1.38419 0.85205 0.78910 0.78204 0.77612 1.18699 1.18921 1.22050 1.21805 0.96218 1.01996 0.85233 1.23161 1.03762 0.98058 0.95710 1.23262 1.00135 0.94388 1.03642 1.19448 0.94052 0.90944 1.05139 1.20162 0.93010 0.97389 1.02873 1.18231 0.93331 0.89576 1.23004 1.20144 0.71446 0.85833 0.81568 1.90791 1.49166 1.68351 1.33834 1.86759 1.77512 1.28763 1.33193 1.23116 0.96433 0.78090 1.01379 1.21908 1.01940 1.00316 0.95939 1.22204 0.92901 1.04360 1.02775 0.89209 0.88993 0.88286 0.93229 0.87111 0.89624 0.86783 0.86290 0.90144 0.89552 0.91559 0.93491 0.91106 0.90761 0.88028 0.92135 0.90537 0.93467 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 10.24 71.24 0.73 -1.02 16 2 C 0.09 2.87 7.21 42.21 0.30 3.18 16 3 N -0.51 -18.05 6.01 -171.62 -1.03 -19.08 16 4 H 0.43 13.92 8.96 -92.71 -0.83 13.09 16 5 C -0.02 -0.91 5.05 39.99 0.20 -0.71 16 6 C 0.53 28.09 6.41 86.45 0.55 28.64 16 7 O -0.57 -35.96 14.54 -4.43 -0.06 -36.02 16 8 N -0.42 -20.88 2.85 -617.60 -1.76 -22.64 16 9 C -0.35 -18.91 7.53 84.09 0.63 -18.28 16 10 H 0.08 4.28 7.68 -2.91 -0.02 4.26 16 11 C 0.01 0.66 4.76 84.94 0.40 1.06 16 12 N -0.86 -51.51 11.10 21.67 0.24 -51.27 16 13 Si 0.98 44.43 29.56 68.60 2.03 46.46 16 14 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 15 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 16 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 17 C 0.05 2.08 5.97 44.99 0.27 2.35 16 18 C -0.17 -5.78 9.86 30.62 0.30 -5.48 16 19 C -0.18 -5.66 10.17 30.62 0.31 -5.35 16 20 C -0.09 -3.47 6.09 -19.52 -0.12 -3.59 16 21 C -0.08 -2.75 10.01 71.23 0.71 -2.04 16 22 C -0.23 -8.03 6.01 -20.13 -0.12 -8.15 16 23 C 0.57 18.08 7.11 70.19 0.50 18.58 16 24 O -0.53 -19.16 16.37 19.72 0.32 -18.84 16 25 O -0.35 -9.22 9.89 -56.68 -0.56 -9.78 16 26 C 0.06 1.27 3.19 30.59 0.10 1.37 16 27 C -0.14 -1.97 9.57 71.98 0.69 -1.28 16 28 C -0.17 -2.53 9.55 71.98 0.69 -1.84 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 1.62 7.93 -2.39 -0.02 1.60 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.26 14.84 8.32 -92.71 -0.77 14.07 16 33 H 0.11 4.20 7.08 -2.39 -0.02 4.18 16 34 H 0.09 3.32 7.14 -2.38 -0.02 3.31 16 35 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.08 2.81 8.03 -2.39 -0.02 2.79 16 38 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.07 2.17 8.05 -2.39 -0.02 2.15 16 40 H 0.05 1.87 7.91 -2.39 -0.02 1.85 16 41 H 0.07 1.59 7.16 -2.39 -0.02 1.57 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -77.28 398.18 5.49 -71.79 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.16 Total: 31.94 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.16 Total: 7.44 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -2.55 Total: -92.99 kcal Atomic # 8 Polarization: -64.34 SS G_CDS: -0.30 Total: -64.64 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -77.28 5.49 -71.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.312 kcal (2) G-P(sol) polarization free energy of solvation -77.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds