Wall clock time and date at job start Tue Mar 31 2020 20:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.44950 * 2 1 4 4 C 1.53041 * 109.45849 * 240.03698 * 2 1 3 5 5 C 1.53192 * 109.31116 * 178.61757 * 4 2 1 6 6 N 1.46924 * 108.77768 * 54.63049 * 5 4 2 7 7 C 1.34784 * 120.62887 * 126.36867 * 6 5 4 8 8 O 1.21588 * 119.99612 * 174.92121 * 7 6 5 9 9 N 1.34770 * 120.00037 * 354.92028 * 7 6 5 10 10 C 1.46501 * 120.00039 * 185.14980 * 9 7 6 11 11 C 1.50699 * 109.46901 * 180.02562 * 10 9 7 12 12 C 1.38301 * 119.92955 * 90.00351 * 11 10 9 13 13 C 1.38103 * 120.06577 * 180.02562 * 12 11 10 14 14 C 1.38876 * 119.93460 * 359.97438 * 13 12 11 15 15 O 1.35749 * 120.07109 * 180.02562 * 14 13 12 16 16 C 1.34828 * 116.99922 * 354.50644 * 15 14 13 17 17 H 1.07997 * 120.00196 * 5.05064 * 16 15 14 18 18 C 1.38660 * 119.99786 * 185.05648 * 16 15 14 19 19 N 1.31560 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99944 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47221 * 59.99184 * 20 18 16 22 22 H 1.48504 * 109.47114 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46799 * 299.99644 * 20 18 16 24 24 C 1.38884 * 119.85876 * 0.27347 * 14 13 12 25 25 C 1.38097 * 119.93015 * 359.49452 * 24 14 13 26 26 C 1.46927 * 118.74158 * 306.64593 * 6 5 4 27 27 C 1.52765 * 109.00839 * 53.30683 * 26 6 5 28 28 H 1.09004 * 109.47408 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47569 * 299.96606 * 1 2 3 30 30 H 1.08999 * 109.47147 * 59.96412 * 1 2 3 31 31 H 0.96702 * 113.99509 * 60.03789 * 3 2 1 32 32 H 1.08991 * 109.49906 * 58.66255 * 4 2 1 33 33 H 1.09005 * 109.52119 * 298.57749 * 4 2 1 34 34 H 1.09000 * 109.58659 * 294.84793 * 5 4 2 35 35 H 1.09001 * 109.70573 * 174.48958 * 5 4 2 36 36 H 0.97001 * 119.99760 * 5.14554 * 9 7 6 37 37 H 1.08996 * 109.46771 * 59.99890 * 10 9 7 38 38 H 1.08999 * 109.46818 * 299.99608 * 10 9 7 39 39 H 1.07997 * 119.96945 * 359.97438 * 12 11 10 40 40 H 1.08004 * 120.03356 * 179.97438 * 13 12 11 41 41 H 0.97002 * 119.99468 * 180.02562 * 19 18 16 42 42 H 1.08002 * 120.03260 * 179.72726 * 24 14 13 43 43 H 1.07996 * 119.96532 * 180.22922 * 25 24 14 44 44 H 1.08995 * 109.58541 * 173.14542 * 26 6 5 45 45 H 1.08999 * 109.58568 * 293.56932 * 26 6 5 46 46 H 1.08994 * 109.56111 * 185.55539 * 27 26 6 47 47 H 1.09001 * 109.38384 * 65.51448 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0058 1.3474 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2488 0.0000 7 6 4.9613 -2.2579 -0.0001 8 8 5.4343 -2.6511 1.0488 9 7 5.3305 -2.8310 -1.1626 10 6 6.2137 -3.9999 -1.1551 11 6 6.4719 -4.4434 -2.5720 12 6 7.5457 -3.9249 -3.2726 13 6 7.7846 -4.3290 -4.5714 14 6 6.9456 -5.2575 -5.1737 15 8 7.1781 -5.6571 -6.4500 16 6 8.1698 -5.0319 -7.1161 17 1 8.7907 -4.3097 -6.6069 18 6 8.3924 -5.3161 -8.4549 19 7 7.6362 -6.1962 -9.0750 20 14 9.7667 -4.4505 -9.3775 21 1 11.0666 -4.7516 -8.7258 22 1 9.7961 -4.9276 -10.7835 23 1 9.5302 -2.9846 -9.3565 24 6 5.8651 -5.7724 -4.4692 25 6 5.6343 -5.3679 -3.1691 26 6 3.5671 -0.6924 1.2643 27 6 2.0398 -0.7208 1.2501 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5133 0.8903 30 1 -0.3633 0.5144 -0.8896 31 1 1.7207 1.8652 0.7654 32 1 1.6572 -0.2207 -2.1398 33 1 1.6977 -1.7556 -1.2389 34 1 3.9143 0.3409 -1.3673 35 1 3.9437 -1.2830 -2.0986 36 1 5.0114 -2.4697 -2.0043 37 1 5.7396 -4.8099 -0.6010 38 1 7.1586 -3.7381 -0.6789 39 1 8.1975 -3.2026 -2.8039 40 1 8.6230 -3.9234 -5.1182 41 1 7.7922 -6.3952 -10.0115 42 1 5.2083 -6.4913 -4.9364 43 1 4.7965 -5.7708 -2.6196 44 1 3.9346 -1.2908 2.0978 45 1 3.9096 0.3368 1.3716 46 1 1.6572 -0.2208 2.1398 47 1 1.6972 -1.7555 1.2386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177498098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:21 Heat of formation + Delta-G solvation = -102.703283 kcal Electronic energy + Delta-G solvation = -28345.698522 eV Core-core repulsion = 24300.217150 eV Total energy + Delta-G solvation = -4045.481372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.60401 -40.80814 -39.71731 -38.50095 -36.45939 -35.74744 -34.28557 -33.23456 -32.30131 -31.83335 -31.15965 -29.22033 -27.62645 -26.23027 -24.54773 -24.08948 -23.64483 -22.21941 -21.69584 -20.60499 -19.87827 -19.38063 -18.78379 -17.41453 -17.27497 -16.73235 -16.44660 -16.29579 -16.10874 -15.82386 -15.57330 -15.52293 -15.29434 -15.17524 -15.06910 -14.57342 -14.44124 -14.32137 -14.11015 -13.66224 -13.58942 -13.30449 -13.02158 -12.86452 -12.81057 -12.73213 -12.52449 -12.38474 -12.25220 -12.20908 -12.15749 -12.13160 -11.49807 -11.20558 -11.15362 -10.80286 -10.79352 -10.20172 -9.81502 -9.46018 -9.02249 -8.48080 -6.16271 0.52394 0.57655 1.36028 1.45263 1.51704 1.73781 2.12180 2.17457 2.74686 2.99772 3.21378 3.33649 3.48446 3.70620 3.75895 3.87306 3.93774 4.03321 4.08656 4.17303 4.30937 4.40516 4.46329 4.52627 4.56881 4.62919 4.73113 4.74339 4.80929 4.82982 4.84731 4.98960 5.01908 5.04229 5.08946 5.14391 5.26405 5.30331 5.32991 5.46044 5.52313 5.58000 5.68903 5.75654 5.95639 6.01434 6.15695 6.94130 6.95460 6.96700 7.53731 7.75649 8.74418 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.002174 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.777495 B =12877.213370 C =13480.050780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.134 3.866 3 O -0.570 6.570 4 C -0.122 4.122 5 C 0.115 3.885 6 N -0.625 5.625 7 C 0.701 3.299 8 O -0.635 6.635 9 N -0.733 5.733 10 C 0.203 3.797 11 C -0.182 4.182 12 C -0.046 4.046 13 C -0.243 4.243 14 C 0.123 3.877 15 O -0.228 6.228 16 C -0.414 4.414 17 H 0.103 0.897 18 C -0.021 4.021 19 N -0.918 5.918 20 Si 1.017 2.983 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.257 1.257 24 C -0.203 4.203 25 C -0.042 4.042 26 C 0.132 3.868 27 C -0.152 4.152 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.390 0.610 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.404 0.596 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.137 0.863 40 H 0.121 0.879 41 H 0.273 0.727 42 H 0.116 0.884 43 H 0.148 0.852 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.325 14.931 19.123 27.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.093 3.907 3 O -0.378 6.378 4 C -0.160 4.160 5 C -0.008 4.008 6 N -0.362 5.362 7 C 0.403 3.597 8 O -0.517 6.517 9 N -0.391 5.391 10 C 0.080 3.920 11 C -0.183 4.183 12 C -0.064 4.064 13 C -0.262 4.262 14 C 0.072 3.928 15 O -0.134 6.134 16 C -0.490 4.490 17 H 0.120 0.880 18 C -0.219 4.219 19 N -0.556 5.556 20 Si 0.836 3.164 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.222 4.222 25 C -0.060 4.060 26 C 0.009 3.991 27 C -0.191 4.191 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.240 0.760 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.242 0.758 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.165 0.835 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.119 0.881 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.848 14.169 18.977 26.944 hybrid contribution 0.285 0.242 -0.728 0.818 sum -12.563 14.410 18.250 26.430 Atomic orbital electron populations 1.22431 0.94338 1.03115 1.03184 1.21073 0.93146 0.82324 0.94164 1.86536 1.77523 1.23127 1.50633 1.21946 0.94670 1.01043 0.98364 1.21646 0.94890 0.99494 0.84774 1.47318 1.44512 1.35862 1.08509 1.16038 0.79858 0.79875 0.83928 1.90863 1.60580 1.68036 1.32234 1.45467 1.53182 1.33091 1.07335 1.19726 0.93634 0.86627 0.92048 1.19485 0.99191 1.03204 0.96462 1.20930 0.96211 0.97109 0.92171 1.21236 1.03300 1.04044 0.97659 1.19990 0.94193 0.93111 0.85493 1.83947 1.51358 1.56541 1.21528 1.21787 1.09799 1.23703 0.93734 0.87958 1.26570 1.01417 0.97557 0.96344 1.70173 1.40224 1.33313 1.11895 0.84670 0.76470 0.78362 0.76893 1.18255 1.19711 1.18097 1.20446 0.98908 1.06520 0.96359 1.20865 0.98102 0.94841 0.92219 1.21326 0.94130 0.98755 0.84880 1.22515 0.94736 1.02201 0.99605 0.91457 0.90824 0.91940 0.76028 0.89296 0.90081 0.90614 0.90081 0.75777 0.91089 0.91619 0.84558 0.86163 0.91786 0.86544 0.83482 0.90862 0.90837 0.88088 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 8.81 71.98 0.63 -0.73 16 2 C 0.13 1.43 0.98 -10.77 -0.01 1.42 16 3 O -0.57 -6.41 11.71 -148.98 -1.74 -8.16 16 4 C -0.12 -1.61 5.11 30.67 0.16 -1.45 16 5 C 0.11 1.88 6.20 86.36 0.54 2.42 16 6 N -0.63 -12.92 2.98 -837.73 -2.50 -15.41 16 7 C 0.70 18.92 8.29 179.05 1.49 20.41 16 8 O -0.63 -21.91 15.79 -3.99 -0.06 -21.97 16 9 N -0.73 -17.73 5.46 -482.30 -2.63 -20.37 16 10 C 0.20 5.26 5.80 85.63 0.50 5.76 16 11 C -0.18 -5.36 5.25 -19.83 -0.10 -5.47 16 12 C -0.05 -1.49 9.69 22.25 0.22 -1.28 16 13 C -0.24 -10.06 9.17 22.39 0.21 -9.86 16 14 C 0.12 5.86 6.65 22.58 0.15 6.01 16 15 O -0.23 -13.29 9.76 -22.71 -0.22 -13.52 16 16 C -0.41 -23.49 9.49 67.92 0.64 -22.85 16 17 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 18 C -0.02 -1.16 5.49 84.83 0.47 -0.70 16 19 N -0.92 -55.35 13.67 21.62 0.30 -55.06 16 20 Si 1.02 41.93 29.55 68.60 2.03 43.96 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 24 C -0.20 -8.12 9.99 22.39 0.22 -7.89 16 25 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 26 C 0.13 2.29 6.15 86.22 0.53 2.82 16 27 C -0.15 -1.71 5.07 30.53 0.15 -1.56 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.39 1.54 9.04 -74.06 -0.67 0.87 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.08 1.30 7.81 -2.39 -0.02 1.28 16 35 H 0.08 1.27 5.56 -2.39 -0.01 1.26 16 36 H 0.40 8.66 5.92 -92.71 -0.55 8.11 16 37 H 0.07 1.81 8.08 -2.39 -0.02 1.79 16 38 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 39 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 40 H 0.12 5.09 5.64 -2.91 -0.02 5.08 16 41 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 43 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 44 H 0.07 1.56 7.04 -2.39 -0.02 1.54 16 45 H 0.07 1.18 7.81 -2.39 -0.02 1.16 16 46 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -74.78 381.75 0.95 -73.83 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.21 Total: 30.73 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 6.00 Total: -14.04 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -4.83 Total: -90.84 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -2.03 Total: -43.65 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -74.78 0.95 -73.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177498098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.873 kcal (2) G-P(sol) polarization free energy of solvation -74.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds