Wall clock time and date at job start Tue Mar 31 2020 17:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.48735 * 2 1 4 4 C 1.52562 * 109.49020 * 239.95311 * 2 1 3 5 5 C 1.47099 * 114.32339 * 155.02230 * 4 2 1 6 6 C 1.54866 * 110.32213 * 62.80525 * 5 4 2 7 7 N 1.44574 * 109.59634 * 288.72712 * 6 5 4 8 8 C 1.34774 * 118.64700 * 270.70762 * 7 6 5 9 9 O 1.21581 * 120.00614 * 180.02562 * 8 7 6 10 10 N 1.34786 * 119.99598 * 0.02562 * 8 7 6 11 11 C 1.39945 * 119.99788 * 174.77084 * 10 8 7 12 12 C 1.38958 * 120.03319 * 146.41753 * 11 10 8 13 13 C 1.38157 * 120.06772 * 179.97438 * 12 11 10 14 14 C 1.38171 * 120.13590 * 0.02562 * 13 12 11 15 15 C 1.38904 * 120.06909 * 359.97438 * 14 13 12 16 16 O 1.35754 * 120.02903 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00328 * 5.91628 * 16 15 14 18 18 H 1.08000 * 119.99715 * 5.41023 * 17 16 15 19 19 C 1.38650 * 120.00256 * 185.39901 * 17 16 15 20 20 N 1.31566 * 119.99702 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00052 * 179.97438 * 19 17 16 22 22 H 1.48489 * 109.47284 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46614 * 120.00796 * 21 19 17 24 24 H 1.48498 * 109.47326 * 240.00465 * 21 19 17 25 25 C 1.38708 * 120.03526 * 326.14498 * 11 10 8 26 26 C 1.47603 * 122.71365 * 90.72885 * 7 6 5 27 27 C 1.50816 * 109.53677 * 120.12840 * 2 1 3 28 28 H 1.08995 * 109.47091 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47243 * 300.04855 * 1 2 3 30 30 H 1.09001 * 109.47328 * 60.04885 * 1 2 3 31 31 H 0.96699 * 114.00014 * 59.95339 * 3 2 1 32 32 H 1.08998 * 108.51413 * 33.77406 * 4 2 1 33 33 H 1.08999 * 108.39098 * 276.18729 * 4 2 1 34 34 H 1.08997 * 109.32628 * 302.54074 * 5 4 2 35 35 H 1.08997 * 109.18510 * 182.97588 * 5 4 2 36 36 H 1.08993 * 109.44848 * 168.69187 * 6 5 4 37 37 H 1.09000 * 109.43141 * 48.75240 * 6 5 4 38 38 H 0.96992 * 119.99944 * 354.76960 * 10 8 7 39 39 H 1.08001 * 119.96577 * 0.02562 * 12 11 10 40 40 H 1.08001 * 119.93198 * 179.97438 * 13 12 11 41 41 H 1.08001 * 119.96350 * 180.02562 * 14 13 12 42 42 H 0.97006 * 119.99461 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.06938 * 0.02562 * 25 11 10 44 44 H 1.08995 * 108.94712 * 78.55624 * 26 7 6 45 45 H 1.09000 * 108.94784 * 197.27542 * 26 7 6 46 46 H 1.09003 * 109.41525 * 91.69541 * 27 2 1 47 47 H 1.09000 * 109.28325 * 332.09989 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0067 1.3472 0.0000 4 6 2.0390 -0.7201 -1.2449 5 6 3.3866 -0.3132 -1.6718 6 6 4.4253 -0.6600 -0.5768 7 7 4.2523 0.2248 0.5534 8 6 4.9271 1.3914 0.5698 9 8 4.8003 2.1539 1.5083 10 7 5.7425 1.7127 -0.4542 11 6 6.3577 2.9692 -0.4910 12 6 7.6284 3.1056 -1.0365 13 6 8.2363 4.3457 -1.0737 14 6 7.5834 5.4537 -0.5684 15 6 6.3130 5.3238 -0.0218 16 8 5.6721 6.4130 0.4739 17 6 6.2692 7.6086 0.2953 18 1 7.1693 7.6795 -0.2974 19 6 5.7276 8.7471 0.8721 20 7 4.6312 8.6607 1.5943 21 14 6.5552 10.4034 0.6253 22 1 7.7639 10.2317 -0.2201 23 1 5.6110 11.3335 -0.0447 24 1 6.9483 10.9619 1.9439 25 6 5.6974 4.0805 0.0119 26 6 3.3676 -0.0968 1.6902 27 6 2.0343 -0.7134 1.2293 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5146 0.8896 30 1 -0.3634 0.5131 -0.8904 31 1 1.7210 1.8655 0.7647 32 1 1.3446 -0.5296 -2.0632 33 1 2.0487 -1.7912 -1.0429 34 1 3.3984 0.7616 -1.8529 35 1 3.6442 -0.8370 -2.5923 36 1 5.4310 -0.5414 -0.9800 37 1 4.2825 -1.6917 -0.2552 38 1 5.9028 1.0732 -1.1655 39 1 8.1411 2.2414 -1.4326 40 1 9.2241 4.4491 -1.4977 41 1 8.0610 6.4218 -0.5993 42 1 4.2525 9.4572 1.9982 43 1 4.7082 3.9777 0.4327 44 1 3.8764 -0.8033 2.3458 45 1 3.1609 0.8170 2.2474 46 1 2.1842 -1.7685 1.0001 47 1 1.2978 -0.6199 2.0274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280202944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:46 Heat of formation + Delta-G solvation = -60.393985 kcal Electronic energy + Delta-G solvation = -29918.233452 eV Core-core repulsion = 25874.586749 eV Total energy + Delta-G solvation = -4043.646703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.02 seconds Orbital eigenvalues (eV) -40.87732 -39.32408 -38.39495 -36.50696 -35.63085 -34.01334 -33.35436 -32.35720 -32.12321 -29.60736 -29.02135 -27.91995 -26.37849 -25.20059 -24.13305 -22.77673 -21.63933 -21.08024 -20.22087 -19.31733 -18.37810 -17.78127 -17.07152 -16.67789 -15.98163 -15.79812 -15.33580 -15.04319 -14.94334 -14.48072 -14.38289 -14.06457 -13.95353 -13.70668 -13.49214 -13.38425 -13.10069 -12.94219 -12.68123 -12.55844 -12.38204 -11.86778 -11.77921 -11.64752 -11.40668 -11.39822 -11.22056 -11.00438 -10.92606 -10.88107 -10.68094 -10.63133 -10.36917 -9.99799 -9.73629 -9.56859 -9.14149 -8.72507 -8.49527 -7.48869 -7.04597 -6.33234 -3.91910 2.22766 2.47694 2.80758 3.19339 3.20604 3.26378 3.57762 3.96084 4.07451 4.14563 4.38176 4.49709 4.67196 4.72255 4.73883 4.77024 4.97459 5.15700 5.19895 5.22939 5.36517 5.39202 5.42677 5.52686 5.58040 5.62545 5.65868 5.73878 5.75507 5.85712 5.94913 5.96152 6.02073 6.23037 6.25552 6.36993 6.48920 6.60334 6.75595 7.00032 7.15736 7.19859 7.35734 7.45808 7.61108 7.71199 7.96133 8.12217 8.18398 8.89802 9.12107 9.85724 10.85073 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.003064 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.785024 B = 9136.469364 C =10201.521203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.134 3.866 3 O -0.542 6.542 4 C -0.098 4.098 5 C -0.138 4.138 6 C 0.115 3.885 7 N -0.608 5.608 8 C 0.710 3.290 9 O -0.565 6.565 10 N -0.682 5.682 11 C 0.199 3.801 12 C -0.240 4.240 13 C -0.059 4.059 14 C -0.248 4.248 15 C 0.168 3.832 16 O -0.176 6.176 17 C -0.389 4.389 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.862 5.862 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.277 1.277 25 C -0.184 4.184 26 C 0.140 3.860 27 C -0.162 4.162 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.375 0.625 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.399 0.601 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.268 0.732 43 H 0.131 0.869 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 -22.489 -5.412 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.093 3.907 3 O -0.347 6.347 4 C -0.136 4.136 5 C -0.177 4.177 6 C -0.010 4.010 7 N -0.345 5.345 8 C 0.412 3.588 9 O -0.440 6.440 10 N -0.331 5.331 11 C 0.104 3.896 12 C -0.261 4.261 13 C -0.078 4.078 14 C -0.268 4.268 15 C 0.114 3.886 16 O -0.079 6.079 17 C -0.465 4.465 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.205 4.205 26 C 0.017 3.983 27 C -0.201 4.201 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.223 0.777 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.235 0.765 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.144 0.856 42 H 0.078 0.922 43 H 0.149 0.851 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.692 -22.003 -5.000 23.046 hybrid contribution 0.159 0.474 -0.026 0.501 sum -4.532 -21.529 -5.026 22.567 Atomic orbital electron populations 1.22564 0.95916 1.02225 1.02723 1.20540 0.91940 0.83827 0.94416 1.86674 1.76485 1.22020 1.49566 1.20415 0.97628 0.98869 0.96677 1.21192 0.94905 1.03786 0.97822 1.21446 0.98346 0.94288 0.86948 1.46580 1.46876 1.19106 1.21928 1.15795 0.78843 0.81549 0.82641 1.90975 1.67692 1.50176 1.35200 1.42679 1.49079 1.16126 1.25210 1.16953 0.91051 0.82709 0.98843 1.20224 0.94835 0.97755 1.13293 1.20464 0.98073 0.91881 0.97352 1.21152 0.96929 0.99631 1.09123 1.19139 0.90296 0.88066 0.91103 1.84009 1.44313 1.12603 1.66984 1.21373 1.10979 0.81511 1.32681 0.89065 1.25285 0.96331 0.99136 0.95883 1.70077 1.18971 1.29778 1.30895 0.85661 0.78899 0.80582 0.78338 1.19126 1.20247 1.20238 1.20051 1.01933 0.89071 1.09474 1.21395 0.88555 1.01329 0.86975 1.22594 0.97593 1.00768 0.99137 0.91944 0.92221 0.91818 0.77706 0.91908 0.91704 0.90011 0.91277 0.91219 0.90686 0.76492 0.87642 0.87203 0.85599 0.92218 0.85129 0.92516 0.88948 0.91001 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 8.44 37.16 0.31 -1.03 16 2 C 0.13 1.18 0.96 -91.94 -0.09 1.09 16 3 O -0.54 -6.71 9.17 -35.23 -0.32 -7.03 16 4 C -0.10 -0.79 4.55 -29.79 -0.14 -0.93 16 5 C -0.14 -1.21 5.50 -28.58 -0.16 -1.36 16 6 C 0.11 0.99 5.18 -4.09 -0.02 0.97 16 7 N -0.61 -7.32 1.73 -178.27 -0.31 -7.63 16 8 C 0.71 11.92 7.32 -86.91 -0.64 11.29 16 9 O -0.57 -12.18 13.34 5.29 0.07 -12.10 16 10 N -0.68 -10.92 5.19 -14.24 -0.07 -10.99 16 11 C 0.20 3.95 6.27 -83.71 -0.52 3.43 16 12 C -0.24 -4.35 9.96 -39.34 -0.39 -4.74 16 13 C -0.06 -1.13 10.03 -39.64 -0.40 -1.52 16 14 C -0.25 -5.71 9.13 -39.36 -0.36 -6.07 16 15 C 0.17 4.41 6.64 -39.14 -0.26 4.15 16 16 O -0.18 -5.35 9.76 0.04 0.00 -5.35 16 17 C -0.39 -11.36 9.44 30.88 0.29 -11.07 16 18 H 0.09 2.46 5.29 -52.49 -0.28 2.18 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -26.33 13.67 55.48 0.76 -25.57 16 21 Si 0.94 21.25 29.55 -169.99 -5.02 16.23 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.18 -4.43 8.60 -39.21 -0.34 -4.77 16 26 C 0.14 1.49 5.52 -2.94 -0.02 1.47 16 27 C -0.16 -1.24 5.15 -27.33 -0.14 -1.38 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 30 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.38 4.37 8.78 45.56 0.40 4.77 16 32 H 0.06 0.51 7.80 -51.93 -0.41 0.11 16 33 H 0.06 0.41 7.34 -51.93 -0.38 0.02 16 34 H 0.08 0.99 7.44 -51.93 -0.39 0.60 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.54 6.16 -51.93 -0.32 0.22 16 37 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 38 H 0.40 4.90 6.39 -40.82 -0.26 4.64 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.13 2.87 5.71 -52.49 -0.30 2.57 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.13 3.40 6.45 -52.49 -0.34 3.06 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.09 1.19 6.74 -51.93 -0.35 0.84 16 46 H 0.07 0.45 7.31 -51.93 -0.38 0.07 16 47 H 0.08 0.52 7.74 -51.93 -0.40 0.12 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -35.83 368.16 -8.22 -44.05 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -5.91 Total: 12.36 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.96 Total: -9.50 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.38 Total: -44.19 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.25 Total: -24.49 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.83 -8.22 -44.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280202944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.344 kcal (2) G-P(sol) polarization free energy of solvation -35.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.02 seconds