Wall clock time and date at job start Tue Mar 31 2020 17:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.48735 * 2 1 4 4 C 1.52562 * 109.49020 * 239.95311 * 2 1 3 5 5 C 1.47099 * 114.32339 * 155.02230 * 4 2 1 6 6 C 1.54866 * 110.32213 * 62.80525 * 5 4 2 7 7 N 1.44574 * 109.59634 * 288.72712 * 6 5 4 8 8 C 1.34774 * 118.64700 * 270.70762 * 7 6 5 9 9 O 1.21581 * 120.00614 * 180.02562 * 8 7 6 10 10 N 1.34786 * 119.99598 * 0.02562 * 8 7 6 11 11 C 1.39945 * 119.99788 * 174.77084 * 10 8 7 12 12 C 1.38958 * 120.03319 * 146.41753 * 11 10 8 13 13 C 1.38157 * 120.06772 * 179.97438 * 12 11 10 14 14 C 1.38171 * 120.13590 * 0.02562 * 13 12 11 15 15 C 1.38904 * 120.06909 * 359.97438 * 14 13 12 16 16 O 1.35754 * 120.02903 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00328 * 5.91628 * 16 15 14 18 18 H 1.08000 * 119.99715 * 5.41023 * 17 16 15 19 19 C 1.38650 * 120.00256 * 185.39901 * 17 16 15 20 20 N 1.31566 * 119.99702 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00052 * 179.97438 * 19 17 16 22 22 H 1.48489 * 109.47284 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46614 * 120.00796 * 21 19 17 24 24 H 1.48498 * 109.47326 * 240.00465 * 21 19 17 25 25 C 1.38708 * 120.03526 * 326.14498 * 11 10 8 26 26 C 1.47603 * 122.71365 * 90.72885 * 7 6 5 27 27 C 1.50816 * 109.53677 * 120.12840 * 2 1 3 28 28 H 1.08995 * 109.47091 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47243 * 300.04855 * 1 2 3 30 30 H 1.09001 * 109.47328 * 60.04885 * 1 2 3 31 31 H 0.96699 * 114.00014 * 59.95339 * 3 2 1 32 32 H 1.08998 * 108.51413 * 33.77406 * 4 2 1 33 33 H 1.08999 * 108.39098 * 276.18729 * 4 2 1 34 34 H 1.08997 * 109.32628 * 302.54074 * 5 4 2 35 35 H 1.08997 * 109.18510 * 182.97588 * 5 4 2 36 36 H 1.08993 * 109.44848 * 168.69187 * 6 5 4 37 37 H 1.09000 * 109.43141 * 48.75240 * 6 5 4 38 38 H 0.96992 * 119.99944 * 354.76960 * 10 8 7 39 39 H 1.08001 * 119.96577 * 0.02562 * 12 11 10 40 40 H 1.08001 * 119.93198 * 179.97438 * 13 12 11 41 41 H 1.08001 * 119.96350 * 180.02562 * 14 13 12 42 42 H 0.97006 * 119.99461 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.06938 * 0.02562 * 25 11 10 44 44 H 1.08995 * 108.94712 * 78.55624 * 26 7 6 45 45 H 1.09000 * 108.94784 * 197.27542 * 26 7 6 46 46 H 1.09003 * 109.41525 * 91.69541 * 27 2 1 47 47 H 1.09000 * 109.28325 * 332.09989 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0067 1.3472 0.0000 4 6 2.0390 -0.7201 -1.2449 5 6 3.3866 -0.3132 -1.6718 6 6 4.4253 -0.6600 -0.5768 7 7 4.2523 0.2248 0.5534 8 6 4.9271 1.3914 0.5698 9 8 4.8003 2.1539 1.5083 10 7 5.7425 1.7127 -0.4542 11 6 6.3577 2.9692 -0.4910 12 6 7.6284 3.1056 -1.0365 13 6 8.2363 4.3457 -1.0737 14 6 7.5834 5.4537 -0.5684 15 6 6.3130 5.3238 -0.0218 16 8 5.6721 6.4130 0.4739 17 6 6.2692 7.6086 0.2953 18 1 7.1693 7.6795 -0.2974 19 6 5.7276 8.7471 0.8721 20 7 4.6312 8.6607 1.5943 21 14 6.5552 10.4034 0.6253 22 1 7.7639 10.2317 -0.2201 23 1 5.6110 11.3335 -0.0447 24 1 6.9483 10.9619 1.9439 25 6 5.6974 4.0805 0.0119 26 6 3.3676 -0.0968 1.6902 27 6 2.0343 -0.7134 1.2293 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5146 0.8896 30 1 -0.3634 0.5131 -0.8904 31 1 1.7210 1.8655 0.7647 32 1 1.3446 -0.5296 -2.0632 33 1 2.0487 -1.7912 -1.0429 34 1 3.3984 0.7616 -1.8529 35 1 3.6442 -0.8370 -2.5923 36 1 5.4310 -0.5414 -0.9800 37 1 4.2825 -1.6917 -0.2552 38 1 5.9028 1.0732 -1.1655 39 1 8.1411 2.2414 -1.4326 40 1 9.2241 4.4491 -1.4977 41 1 8.0610 6.4218 -0.5993 42 1 4.2525 9.4572 1.9982 43 1 4.7082 3.9777 0.4327 44 1 3.8764 -0.8033 2.3458 45 1 3.1609 0.8170 2.2474 46 1 2.1842 -1.7685 1.0001 47 1 1.2978 -0.6199 2.0274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280202944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:38 Heat of formation + Delta-G solvation = -86.405847 kcal Electronic energy + Delta-G solvation = -29919.361411 eV Core-core repulsion = 25874.586749 eV Total energy + Delta-G solvation = -4044.774662 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.98 seconds Orbital eigenvalues (eV) -42.02677 -40.74347 -39.84967 -38.20693 -36.70978 -35.47935 -34.24282 -34.23623 -33.17089 -31.16267 -30.36328 -29.23258 -27.31105 -27.13587 -25.02926 -24.02650 -23.21127 -22.54580 -21.01283 -20.54076 -20.01175 -19.26737 -18.64496 -17.85401 -17.07584 -16.84949 -16.70042 -16.54055 -16.08650 -16.02469 -15.79947 -15.55354 -15.38901 -15.13865 -14.66588 -14.41428 -14.23043 -14.12971 -13.93792 -13.68230 -13.55075 -13.29766 -13.09283 -12.86915 -12.66609 -12.61402 -12.53296 -12.33472 -12.11807 -12.07404 -12.00104 -11.61577 -11.42207 -11.31706 -11.24040 -10.92233 -10.75171 -10.71366 -9.56543 -9.21735 -8.76819 -8.44716 -6.14089 0.52641 0.75002 1.34879 1.44608 1.54918 1.62341 2.19407 2.23794 2.86603 2.90265 3.22130 3.34263 3.57807 3.72783 3.84747 3.97049 4.03229 4.06515 4.18120 4.25754 4.40527 4.46546 4.50427 4.53233 4.71340 4.73250 4.75752 4.78154 4.84285 4.89033 4.91816 4.94708 5.03694 5.10874 5.15566 5.19185 5.30803 5.35913 5.41998 5.52557 5.55426 5.66196 5.75610 5.78729 5.98327 6.06120 6.27556 6.82243 6.97797 6.99219 7.60740 7.83342 8.79694 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.003064 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.785024 B = 9136.469364 C =10201.521203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 O -0.569 6.569 4 C -0.102 4.102 5 C -0.133 4.133 6 C 0.105 3.895 7 N -0.594 5.594 8 C 0.701 3.299 9 O -0.622 6.622 10 N -0.669 5.669 11 C 0.207 3.793 12 C -0.210 4.210 13 C -0.047 4.047 14 C -0.259 4.259 15 C 0.128 3.872 16 O -0.237 6.237 17 C -0.412 4.412 18 H 0.106 0.894 19 C -0.029 4.029 20 N -0.925 5.925 21 Si 1.024 2.976 22 H -0.247 1.247 23 H -0.268 1.268 24 H -0.269 1.269 25 C -0.209 4.209 26 C 0.135 3.865 27 C -0.149 4.149 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.370 0.630 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.040 0.960 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.420 0.580 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.123 0.877 42 H 0.271 0.729 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.101 0.899 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 -26.155 -7.691 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.082 3.918 3 O -0.375 6.375 4 C -0.139 4.139 5 C -0.172 4.172 6 C -0.018 4.018 7 N -0.328 5.328 8 C 0.403 3.597 9 O -0.502 6.502 10 N -0.320 5.320 11 C 0.111 3.889 12 C -0.231 4.231 13 C -0.065 4.065 14 C -0.279 4.279 15 C 0.077 3.923 16 O -0.144 6.144 17 C -0.488 4.488 18 H 0.123 0.877 19 C -0.225 4.225 20 N -0.564 5.564 21 Si 0.843 3.157 22 H -0.170 1.170 23 H -0.193 1.193 24 H -0.194 1.194 25 C -0.232 4.232 26 C 0.013 3.987 27 C -0.187 4.187 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.217 0.783 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.261 0.739 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.140 0.860 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.120 0.880 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.305 -25.805 -7.345 26.929 hybrid contribution -0.571 1.219 0.585 1.467 sum -2.875 -24.586 -6.760 25.660 Atomic orbital electron populations 1.22506 0.95055 1.03395 1.01954 1.20880 0.92786 0.82340 0.95750 1.86670 1.77164 1.24127 1.49551 1.20503 0.97031 1.00434 0.95968 1.21153 0.95500 1.01477 0.99076 1.21823 0.99157 0.95114 0.85687 1.46652 1.45397 1.17730 1.23068 1.16114 0.79067 0.82429 0.82051 1.90954 1.69361 1.52398 1.37484 1.42492 1.48699 1.15050 1.25754 1.17117 0.91690 0.82894 0.97224 1.20837 0.93126 0.99283 1.09852 1.21009 0.99605 0.90601 0.95294 1.21295 0.95844 1.01214 1.09522 1.19657 0.92168 0.87757 0.92682 1.83970 1.46631 1.13951 1.69815 1.21944 1.11551 0.81932 1.33384 0.87711 1.26724 0.96935 1.03683 0.95178 1.70249 1.21516 1.31301 1.33317 0.84459 0.78279 0.74139 0.78811 1.16984 1.19300 1.19415 1.20028 1.01236 0.90447 1.11445 1.21536 0.90168 1.00287 0.86758 1.22520 0.95729 1.01708 0.98777 0.89672 0.92520 0.93155 0.78269 0.92285 0.88521 0.94098 0.88499 0.89828 0.87178 0.73926 0.82092 0.82198 0.85952 0.91963 0.88829 0.90859 0.92502 0.88032 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 8.44 71.98 0.61 -1.85 16 2 C 0.12 2.04 0.96 -11.65 -0.01 2.03 16 3 O -0.57 -15.16 9.17 -148.98 -1.37 -16.52 16 4 C -0.10 -1.36 4.55 28.61 0.13 -1.23 16 5 C -0.13 -1.98 5.50 29.40 0.16 -1.82 16 6 C 0.11 1.46 5.18 87.38 0.45 1.91 16 7 N -0.59 -13.70 1.73 -836.19 -1.44 -15.14 16 8 C 0.70 24.07 7.32 179.05 1.31 25.38 16 9 O -0.62 -28.89 13.34 -3.97 -0.05 -28.94 16 10 N -0.67 -20.75 5.19 -317.22 -1.65 -22.39 16 11 C 0.21 8.12 6.27 38.13 0.24 8.36 16 12 C -0.21 -6.78 9.96 22.42 0.22 -6.56 16 13 C -0.05 -1.63 10.03 22.23 0.22 -1.40 16 14 C -0.26 -11.99 9.13 22.41 0.20 -11.79 16 15 C 0.13 7.16 6.64 22.56 0.15 7.31 16 16 O -0.24 -15.74 9.76 -22.77 -0.22 -15.96 16 17 C -0.41 -25.61 9.44 67.92 0.64 -24.97 16 18 H 0.11 5.90 5.29 -2.91 -0.02 5.88 16 19 C -0.03 -1.73 5.49 84.83 0.47 -1.26 16 20 N -0.93 -60.60 13.67 21.61 0.30 -60.30 16 21 Si 1.02 45.07 29.55 68.60 2.03 47.10 16 22 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C -0.21 -10.82 8.60 22.51 0.19 -10.63 16 26 C 0.14 2.79 5.52 86.49 0.48 3.27 16 27 C -0.15 -1.96 5.15 30.21 0.16 -1.81 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 30 H 0.05 0.85 8.09 -2.39 -0.02 0.83 16 31 H 0.37 10.01 8.78 -74.06 -0.65 9.36 16 32 H 0.06 0.84 7.80 -2.39 -0.02 0.82 16 33 H 0.10 0.71 7.34 -2.39 -0.02 0.70 16 34 H 0.04 0.96 7.44 -2.39 -0.02 0.95 16 35 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 0.94 6.16 -2.39 -0.01 0.93 16 37 H 0.11 0.87 8.06 -2.39 -0.02 0.85 16 38 H 0.42 9.05 6.39 -92.71 -0.59 8.46 16 39 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 40 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.12 5.66 5.71 -2.91 -0.02 5.64 16 42 H 0.27 16.18 8.31 -92.70 -0.77 15.41 16 43 H 0.09 5.46 6.45 -2.91 -0.02 5.44 16 44 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.06 1.60 6.74 -2.39 -0.02 1.58 16 46 H 0.10 0.79 7.31 -2.39 -0.02 0.77 16 47 H 0.09 1.02 7.74 -2.39 -0.02 1.00 16 Total: -1.00 -90.60 368.16 2.99 -87.61 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: -0.23 Total: 39.60 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 5.62 Total: -15.06 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -2.79 Total: -97.83 kcal Atomic # 8 Polarization: -59.79 SS G_CDS: -1.64 Total: -61.43 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -90.60 2.99 -87.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280202944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.205 kcal (2) G-P(sol) polarization free energy of solvation -90.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.98 seconds