Wall clock time and date at job start Tue Mar 31 2020 18:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34517 * 125.78925 * 2 1 4 4 C 1.41383 * 106.83726 * 180.26431 * 3 2 1 5 5 C 1.34515 * 106.84356 * 359.97438 * 4 3 2 6 6 C 1.50703 * 125.78570 * 180.02562 * 5 4 3 7 7 H 1.08992 * 109.67833 * 358.73429 * 6 5 4 8 8 C 1.53296 * 109.67615 * 238.17809 * 6 5 4 9 9 O 1.42968 * 109.22056 * 187.97736 * 8 6 5 10 10 C 1.42966 * 114.16404 * 62.58084 * 9 8 6 11 11 C 1.53291 * 109.22115 * 297.41719 * 10 9 8 12 12 N 1.47151 * 108.38698 * 52.30795 * 11 10 9 13 13 C 1.34775 * 120.98680 * 129.47809 * 12 11 10 14 14 O 1.21582 * 120.00473 * 185.27835 * 13 12 11 15 15 N 1.34779 * 119.99586 * 5.28611 * 13 12 11 16 16 C 1.46507 * 119.99856 * 185.10681 * 15 13 12 17 17 C 1.53000 * 109.47195 * 174.99081 * 16 15 13 18 18 C 1.50698 * 115.54623 * 305.09319 * 17 16 15 19 19 H 1.08005 * 120.00031 * 144.12964 * 18 17 16 20 20 C 1.37874 * 120.00330 * 324.12890 * 18 17 16 21 21 N 1.31521 * 120.00105 * 2.96783 * 20 18 17 22 22 Si 1.86799 * 120.00228 * 182.97005 * 20 18 17 23 23 H 1.48501 * 109.47117 * 59.99800 * 22 20 18 24 24 H 1.48500 * 109.47341 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47477 * 299.99867 * 22 20 18 26 26 C 1.52994 * 117.49957 * 159.42344 * 17 16 15 27 27 C 1.53003 * 117.49800 * 90.75891 * 17 16 15 28 28 O 1.34299 * 108.42065 * 0.02562 * 5 4 3 29 29 H 1.08997 * 109.46932 * 179.71983 * 1 2 3 30 30 H 1.09004 * 109.46851 * 299.71831 * 1 2 3 31 31 H 1.08998 * 109.47170 * 59.71979 * 1 2 3 32 32 H 1.07993 * 126.57959 * 0.25943 * 3 2 1 33 33 H 1.08002 * 126.57478 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.51568 * 307.89749 * 8 6 5 35 35 H 1.08995 * 109.51376 * 68.05229 * 8 6 5 36 36 H 1.09003 * 109.50619 * 177.49788 * 10 9 8 37 37 H 1.09003 * 109.51001 * 57.34714 * 10 9 8 38 38 H 1.08996 * 109.68346 * 292.57978 * 11 10 9 39 39 H 1.09004 * 109.67977 * 172.02735 * 11 10 9 40 40 H 0.96999 * 120.00176 * 5.10911 * 15 13 12 41 41 H 1.09002 * 109.47035 * 294.99356 * 16 15 13 42 42 H 1.09001 * 109.47158 * 54.98894 * 16 15 13 43 43 H 0.96991 * 120.00366 * 185.00536 * 21 20 18 44 44 H 1.08997 * 117.50029 * 359.97438 * 26 17 16 45 45 H 1.08993 * 117.49993 * 145.02432 * 26 17 16 46 46 H 1.08999 * 117.49740 * 214.98215 * 27 17 16 47 47 H 1.08997 * 117.49662 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6320 -0.0062 5 6 3.5814 -0.7122 -0.0091 6 6 4.7706 -1.6379 -0.0153 7 1 5.6904 -1.0535 -0.0398 8 6 4.7063 -2.5527 -1.2436 9 8 5.7296 -3.5462 -1.1447 10 6 5.5917 -4.4185 -0.0204 11 6 5.7014 -3.5991 1.2705 12 7 4.7500 -2.4793 1.1917 13 6 3.8855 -2.2314 2.1955 14 8 3.0435 -1.3630 2.0723 15 7 3.9545 -2.9461 3.3362 16 6 2.9468 -2.7550 4.3824 17 6 3.1804 -3.7665 5.5063 18 6 3.2219 -5.2118 5.0816 19 1 3.8962 -5.8993 5.5707 20 6 2.3991 -5.6567 4.0686 21 7 1.6203 -4.8082 3.4335 22 14 2.3904 -7.4644 3.5982 23 1 1.9869 -8.2794 4.7722 24 1 1.4276 -7.6827 2.4889 25 1 3.7503 -7.8683 3.1592 26 6 2.5801 -3.4501 6.8775 27 6 4.0916 -3.3427 6.6600 28 8 2.2925 -1.0895 -0.0055 29 1 -0.3633 -1.0276 -0.0050 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 1.9666 2.1204 0.0039 33 1 4.5212 1.2433 -0.0083 34 1 3.7310 -3.0377 -1.2858 35 1 4.8590 -1.9614 -2.1464 36 1 6.3815 -5.1694 -0.0432 37 1 4.6195 -4.9102 -0.0582 38 1 6.7152 -3.2128 1.3751 39 1 5.4576 -4.2284 2.1265 40 1 4.6712 -3.5869 3.4644 41 1 3.0248 -1.7437 4.7816 42 1 1.9526 -2.9034 3.9608 43 1 0.9893 -5.1311 2.7715 44 1 2.0192 -2.5211 6.9791 45 1 2.2157 -4.2873 7.4727 46 1 4.7208 -4.1094 7.1121 47 1 4.5250 -2.3435 6.6181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366799866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:55 Heat of formation + Delta-G solvation = -5.079244 kcal Electronic energy + Delta-G solvation = -31101.749814 eV Core-core repulsion = 27060.501739 eV Total energy + Delta-G solvation = -4041.248076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.05718 -39.92522 -38.14547 -36.71238 -34.41059 -33.57784 -32.54845 -32.31674 -31.93141 -30.51173 -27.99199 -25.91622 -25.86002 -25.11640 -23.43062 -21.91527 -21.27060 -21.12498 -19.96862 -19.26950 -18.99814 -17.85256 -16.57776 -16.24950 -15.91704 -15.66296 -15.40058 -15.31827 -14.87270 -14.76368 -14.55789 -14.03509 -13.72205 -13.62009 -13.29363 -12.96113 -12.76898 -12.64446 -12.49141 -12.23833 -12.15237 -11.81907 -11.71602 -11.49265 -11.43686 -11.23334 -11.12307 -10.79798 -10.73392 -10.55308 -10.28938 -10.08666 -9.75040 -9.45991 -9.20451 -9.00339 -8.84913 -8.35763 -8.29687 -7.70765 -7.44956 -6.01583 -4.21978 2.24084 2.96273 3.17157 3.23789 3.26384 3.27182 3.52151 3.80295 4.03560 4.25650 4.60805 4.67112 4.91547 5.00669 5.06911 5.12787 5.24319 5.29639 5.38709 5.45616 5.54959 5.56365 5.63919 5.72030 5.76398 5.80183 5.93660 5.99903 6.01874 6.28873 6.30214 6.39020 6.52791 6.57865 6.60388 6.72753 6.73205 6.88511 7.03531 7.04236 7.10766 7.23929 7.46235 7.60566 7.74604 7.82668 7.98728 8.29465 8.72985 8.89175 9.41167 9.45639 10.87170 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010665 B = 0.005036 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.738973 B = 5558.375685 C = 6448.197711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.000 4.000 3 C -0.218 4.218 4 C -0.219 4.219 5 C 0.037 3.963 6 C 0.213 3.787 7 H 0.100 0.900 8 C 0.054 3.946 9 O -0.379 6.379 10 C 0.046 3.954 11 C 0.080 3.920 12 N -0.641 5.641 13 C 0.705 3.295 14 O -0.569 6.569 15 N -0.698 5.698 16 C 0.184 3.816 17 C 0.036 3.964 18 C -0.497 4.497 19 H 0.059 0.941 20 C 0.076 3.924 21 N -0.862 5.862 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.197 4.197 27 C -0.213 4.213 28 O -0.145 6.145 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.391 0.609 41 H 0.014 0.986 42 H 0.115 0.885 43 H 0.262 0.738 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 5.644 -8.896 11.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.052 4.052 3 C -0.237 4.237 4 C -0.239 4.239 5 C -0.014 4.014 6 C 0.108 3.892 7 H 0.117 0.883 8 C -0.024 4.024 9 O -0.297 6.297 10 C -0.032 4.032 11 C -0.044 4.044 12 N -0.383 5.383 13 C 0.407 3.593 14 O -0.448 6.448 15 N -0.350 5.350 16 C 0.061 3.939 17 C 0.036 3.964 18 C -0.534 4.534 19 H 0.077 0.923 20 C -0.129 4.129 21 N -0.498 5.498 22 Si 0.717 3.283 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.236 4.236 27 C -0.250 4.250 28 O -0.040 6.040 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.226 0.774 41 H 0.032 0.968 42 H 0.132 0.868 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.439 5.949 -9.263 11.870 hybrid contribution 0.193 -1.142 0.441 1.239 sum 4.632 4.807 -8.822 11.063 Atomic orbital electron populations 1.20197 0.86250 1.03640 1.02532 1.22075 0.93495 0.84459 1.05137 1.21194 0.92692 0.98523 1.11336 1.21116 0.97721 0.93228 1.11823 1.21170 0.83130 0.93133 1.03996 1.20040 0.93347 0.90004 0.85769 0.88255 1.23036 0.92272 0.90062 0.97064 1.87930 1.49873 1.45194 1.46680 1.23021 1.02891 0.92075 0.85193 1.22295 0.93383 0.89053 0.99683 1.47438 1.40138 1.32713 1.18017 1.15840 0.80784 0.82559 0.80140 1.90845 1.38210 1.35993 1.79717 1.44920 1.31498 1.42679 1.15881 1.20954 0.94285 0.92777 0.85931 1.19251 0.96663 0.95131 0.85398 1.20434 1.23164 0.91951 1.17876 0.92280 1.24982 0.95528 0.97310 0.95057 1.69862 1.22115 1.32842 1.24958 0.86703 0.77936 0.85458 0.78182 1.20212 1.21277 1.20177 1.22926 0.94345 1.00816 1.05513 1.22950 0.92919 1.00054 1.09069 1.83998 1.15704 1.34357 1.69929 0.90919 0.90140 0.90645 0.84740 0.84814 0.91939 0.87539 0.87623 0.92188 0.90974 0.88311 0.77392 0.96821 0.86786 0.92726 0.91509 0.90230 0.90689 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.42 36.01 0.38 -0.58 16 2 C 0.00 -0.01 7.01 -35.62 -0.25 -0.26 16 3 C -0.22 -3.59 10.81 -39.70 -0.43 -4.02 16 4 C -0.22 -3.64 10.74 -39.70 -0.43 -4.07 16 5 C 0.04 0.66 3.64 -35.62 -0.13 0.53 16 6 C 0.21 3.29 3.55 -68.57 -0.24 3.05 16 7 H 0.10 1.34 8.11 -51.93 -0.42 0.92 16 8 C 0.05 0.73 6.27 37.31 0.23 0.97 16 9 O -0.38 -5.19 10.74 -35.23 -0.38 -5.56 16 10 C 0.05 0.60 6.98 37.31 0.26 0.86 16 11 C 0.08 1.12 6.52 -3.54 -0.02 1.10 16 12 N -0.64 -11.12 3.02 -171.75 -0.52 -11.64 16 13 C 0.71 15.07 8.22 -86.92 -0.71 14.36 16 14 O -0.57 -13.71 11.58 -19.30 -0.22 -13.94 16 15 N -0.70 -15.04 5.03 -65.22 -0.33 -15.36 16 16 C 0.18 4.37 4.61 -4.04 -0.02 4.35 16 17 C 0.04 0.85 2.01 -155.66 -0.31 0.53 16 18 C -0.50 -12.33 8.46 -34.44 -0.29 -12.62 16 19 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 20 C 0.08 1.90 5.33 -17.82 -0.10 1.80 16 21 N -0.86 -22.64 10.23 55.43 0.57 -22.07 16 22 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 26 C -0.20 -4.30 9.96 -26.69 -0.27 -4.56 16 27 C -0.21 -4.40 9.93 -26.69 -0.26 -4.66 16 28 O -0.14 -2.88 8.73 -18.88 -0.16 -3.05 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 35 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.48 5.89 -51.93 -0.31 1.17 16 40 H 0.39 7.93 5.81 -40.82 -0.24 7.69 16 41 H 0.01 0.33 8.09 -51.93 -0.42 -0.09 16 42 H 0.11 3.11 5.88 -51.93 -0.31 2.81 16 43 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 45 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 46 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -30.07 378.38 -10.11 -40.18 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -7.15 Total: 14.29 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -2.60 Total: -3.22 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.28 Total: -49.07 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.77 Total: -22.55 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.07 -10.11 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366799866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.103 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds