Wall clock time and date at job start Tue Mar 31 2020 20:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40189 * 120.36285 * 2 1 4 4 C 1.35348 * 119.94641 * 179.69894 * 3 2 1 5 5 N 1.35770 * 120.70282 * 0.28118 * 4 3 2 6 6 C 1.46496 * 119.62606 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46917 * 89.99673 * 6 5 4 8 8 C 1.52996 * 109.47157 * 304.99608 * 7 6 5 9 9 O 1.42901 * 109.47468 * 64.99831 * 7 6 5 10 10 C 1.50709 * 109.46903 * 184.99863 * 7 6 5 11 11 O 1.21277 * 119.99855 * 26.28585 * 10 7 6 12 12 N 1.34773 * 119.99904 * 206.28165 * 10 7 6 13 13 C 1.46496 * 120.00030 * 185.03709 * 12 10 7 14 14 C 1.53001 * 109.47619 * 175.28566 * 13 12 10 15 15 C 1.50701 * 115.54656 * 63.66707 * 14 13 12 16 16 H 1.08001 * 120.00476 * 268.59903 * 15 14 13 17 17 C 1.37882 * 119.99865 * 88.60067 * 15 14 13 18 18 N 1.31510 * 120.00376 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99703 * 0.06330 * 17 15 14 20 20 H 1.48502 * 109.46948 * 92.15212 * 19 17 15 21 21 H 1.48499 * 109.46850 * 212.14949 * 19 17 15 22 22 H 1.48500 * 109.47210 * 332.14843 * 19 17 15 23 23 C 1.52995 * 117.49764 * 278.00592 * 14 13 12 24 24 C 1.52993 * 117.50349 * 209.34314 * 14 13 12 25 25 C 1.34665 * 120.74589 * 359.97438 * 5 4 3 26 26 O 1.22059 * 119.98128 * 180.02562 * 25 5 4 27 27 C 1.36396 * 120.36693 * 180.23368 * 2 1 3 28 28 H 1.08995 * 109.47373 * 90.00771 * 1 2 3 29 29 H 1.09000 * 109.46842 * 210.00249 * 1 2 3 30 30 H 1.08995 * 109.47091 * 330.00036 * 1 2 3 31 31 H 1.07998 * 120.03166 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.65317 * 180.25165 * 4 3 2 33 33 H 1.09000 * 109.46899 * 209.99062 * 6 5 4 34 34 H 1.08997 * 109.47147 * 329.99639 * 6 5 4 35 35 H 1.09000 * 109.47507 * 60.00624 * 8 7 6 36 36 H 1.09002 * 109.47463 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.47364 * 300.00321 * 8 7 6 38 38 H 0.96703 * 113.99364 * 55.64429 * 9 7 6 39 39 H 0.97004 * 120.00358 * 5.03895 * 12 10 7 40 40 H 1.09004 * 109.47046 * 295.29028 * 13 12 10 41 41 H 1.09005 * 109.47249 * 55.28510 * 13 12 10 42 42 H 0.96999 * 120.00689 * 180.02562 * 18 17 15 43 43 H 1.08997 * 117.50404 * 359.97438 * 23 14 13 44 44 H 1.09006 * 117.49871 * 145.01800 * 23 14 13 45 45 H 1.09003 * 117.49795 * 214.98226 * 24 14 13 46 46 H 1.09004 * 117.49635 * 359.97298 * 24 14 13 47 47 H 1.08001 * 120.35167 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5691 1.1998 0.0062 5 7 4.2538 0.0274 0.0067 6 6 5.7187 0.0443 0.0128 7 6 6.2226 0.0473 1.4575 8 6 5.5958 1.2204 2.2137 9 8 5.8560 -1.1792 2.0925 10 6 7.7230 0.1884 1.4658 11 8 8.2856 0.7373 0.5422 12 7 8.4396 -0.2952 2.4998 13 6 9.8845 -0.0617 2.5624 14 6 10.4327 -0.6079 3.8823 15 6 10.3085 -2.0979 4.0706 16 1 9.4363 -2.5101 4.5563 17 6 11.3084 -2.9351 3.6229 18 7 11.1998 -4.2355 3.7868 19 14 12.8178 -2.2222 2.7845 20 1 13.8777 -1.9797 3.7960 21 1 13.3164 -3.1798 1.7650 22 1 12.4593 -0.9403 2.1261 23 6 10.2943 0.2751 5.1240 24 6 11.6657 0.0785 4.4731 25 6 3.6017 -1.1508 0.0015 26 8 4.2313 -2.1965 0.0025 27 6 2.1966 -1.1768 -0.0048 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6822 2.1486 -0.0004 32 1 4.1102 2.1344 0.0103 33 1 6.0944 -0.8405 -0.5011 34 1 6.0739 0.9394 -0.4978 35 1 4.5106 1.1184 2.2078 36 1 5.9551 1.2228 3.2428 37 1 5.8755 2.1560 1.7294 38 1 6.1633 -1.9697 1.6280 39 1 7.9986 -0.7979 3.2025 40 1 10.3709 -0.5690 1.7292 41 1 10.0826 1.0085 2.5018 42 1 11.9034 -4.8244 3.4722 43 1 9.8131 1.2453 5.0007 44 1 10.1139 -0.2218 6.0773 45 1 12.3870 -0.5476 4.9984 46 1 12.0867 0.9190 3.9213 47 1 1.6684 -2.1188 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435954801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:24 Heat of formation + Delta-G solvation = -62.740756 kcal Electronic energy + Delta-G solvation = -29547.084242 eV Core-core repulsion = 25503.335776 eV Total energy + Delta-G solvation = -4043.748466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.70652 -39.80936 -37.46815 -37.12294 -36.72286 -35.26375 -33.48817 -32.15293 -31.69590 -30.29399 -29.11609 -26.98713 -26.62062 -25.37455 -23.83028 -22.94572 -21.80027 -21.46738 -19.85616 -19.30046 -18.27760 -17.65800 -17.10793 -16.70316 -16.29120 -16.15815 -15.50380 -15.28411 -15.01482 -14.80580 -14.43530 -14.31285 -14.05632 -13.91113 -13.63269 -13.20229 -12.97368 -12.85801 -12.70732 -12.61399 -12.47950 -12.38682 -12.15377 -12.06232 -11.98121 -11.76167 -11.69783 -11.19705 -10.91584 -10.87016 -10.54458 -10.22537 -10.05583 -9.89143 -9.69675 -9.27766 -9.22056 -8.71429 -8.60003 -8.40990 -8.09146 -6.17677 -4.23223 0.64577 1.72375 2.41863 2.78831 3.25360 3.36384 3.37789 3.42272 3.61243 4.06762 4.29632 4.36929 4.37624 4.46554 4.54166 4.71799 4.79633 4.91195 5.00674 5.04768 5.12908 5.21328 5.22816 5.32338 5.45360 5.49657 5.52798 5.57175 5.62374 5.74832 5.89644 5.92335 5.96603 6.01431 6.14976 6.16585 6.34713 6.37565 6.41747 6.65209 6.90744 6.96389 6.98200 7.03761 7.51768 7.64200 7.99151 8.03473 8.38566 8.54443 8.83008 9.44618 10.93456 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.002857 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.416506 B = 9799.206863 C =10266.035383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.010 3.990 3 C -0.236 4.236 4 C 0.139 3.861 5 N -0.489 5.489 6 C 0.076 3.924 7 C 0.108 3.892 8 C -0.141 4.141 9 O -0.539 6.539 10 C 0.486 3.514 11 O -0.556 6.556 12 N -0.684 5.684 13 C 0.154 3.846 14 C -0.015 4.015 15 C -0.494 4.494 16 H 0.080 0.920 17 C 0.081 3.919 18 N -0.892 5.892 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.294 1.294 22 H -0.258 1.258 23 C -0.178 4.178 24 C -0.193 4.193 25 C 0.520 3.480 26 O -0.544 6.544 27 C -0.247 4.247 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.161 0.839 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.393 0.607 39 H 0.413 0.587 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.266 0.734 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.928 14.170 -6.901 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.007 3.993 3 C -0.259 4.259 4 C 0.011 3.989 5 N -0.199 5.199 6 C -0.047 4.047 7 C 0.063 3.937 8 C -0.198 4.198 9 O -0.347 6.347 10 C 0.269 3.731 11 O -0.436 6.436 12 N -0.333 5.333 13 C 0.031 3.969 14 C -0.016 4.016 15 C -0.531 4.531 16 H 0.098 0.902 17 C -0.123 4.123 18 N -0.529 5.529 19 Si 0.708 3.292 20 H -0.205 1.205 21 H -0.221 1.221 22 H -0.182 1.182 23 C -0.215 4.215 24 C -0.230 4.230 25 C 0.322 3.678 26 O -0.426 6.426 27 C -0.269 4.269 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.161 0.839 32 H 0.178 0.822 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.243 0.757 39 H 0.250 0.750 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.241 14.062 -7.130 24.110 hybrid contribution 1.061 -0.294 -0.457 1.192 sum -17.180 13.768 -7.587 23.286 Atomic orbital electron populations 1.20914 0.90525 1.03476 1.02959 1.20177 0.96659 0.92702 0.89790 1.20498 0.92357 0.98844 1.14202 1.21960 0.93527 0.89951 0.93434 1.45419 1.08322 1.06917 1.59216 1.22508 0.77554 1.07060 0.97570 1.21629 0.91039 0.88549 0.92511 1.21820 1.01544 0.94826 1.01602 1.86538 1.80106 1.14675 1.53353 1.20931 0.89368 0.79893 0.82892 1.90675 1.72286 1.45148 1.35475 1.45858 1.09385 1.53548 1.24545 1.21201 0.78926 0.97790 0.99012 1.19602 0.97620 0.95033 0.89389 1.20195 1.07066 0.86012 1.39792 0.90249 1.24984 0.98140 0.94535 0.94636 1.69882 1.34148 1.02790 1.46040 0.86848 0.83268 0.79504 0.79622 1.20456 1.22067 1.18195 1.22857 0.99862 0.99958 0.98828 1.22949 0.91896 1.02635 1.05566 1.17056 0.89190 0.82641 0.78907 1.90947 1.69072 1.30181 1.52390 1.21965 0.92530 0.99478 1.12907 0.90270 0.90860 0.90866 0.83920 0.82200 0.87352 0.86923 0.90868 0.90434 0.90483 0.75696 0.75027 0.91772 0.93506 0.92420 0.90966 0.89328 0.89125 0.90727 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.03 36.01 0.36 -0.28 16 2 C 0.01 0.09 5.89 -104.55 -0.62 -0.53 16 3 C -0.24 -1.64 9.71 -39.88 -0.39 -2.02 16 4 C 0.14 1.08 8.04 -16.84 -0.14 0.94 16 5 N -0.49 -5.45 2.26 -119.77 -0.27 -5.72 16 6 C 0.08 0.92 4.30 -4.04 -0.02 0.91 16 7 C 0.11 1.45 1.11 -91.77 -0.10 1.35 16 8 C -0.14 -1.52 7.96 37.16 0.30 -1.22 16 9 O -0.54 -8.19 11.14 -43.85 -0.49 -8.67 16 10 C 0.49 8.20 6.71 -10.98 -0.07 8.12 16 11 O -0.56 -10.68 16.01 5.56 0.09 -10.59 16 12 N -0.68 -12.57 5.41 -60.29 -0.33 -12.90 16 13 C 0.15 3.18 5.18 -4.04 -0.02 3.16 16 14 C -0.02 -0.33 0.86 -155.67 -0.13 -0.47 16 15 C -0.49 -12.96 9.13 -34.44 -0.31 -13.28 16 16 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 17 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 18 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 19 Si 0.88 21.34 24.78 -169.99 -4.21 17.13 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.26 -5.96 5.83 56.52 0.33 -5.63 16 23 C -0.18 -3.39 9.96 -26.70 -0.27 -3.65 16 24 C -0.19 -3.91 7.42 -26.70 -0.20 -4.11 16 25 C 0.52 7.19 7.02 -15.44 -0.11 7.09 16 26 O -0.54 -9.52 15.40 -3.75 -0.06 -9.58 16 27 C -0.25 -2.77 9.65 -39.38 -0.38 -3.15 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 31 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.16 0.75 7.94 -52.49 -0.42 0.33 16 33 H 0.11 1.52 7.39 -51.93 -0.38 1.14 16 34 H 0.11 1.19 7.55 -51.93 -0.39 0.80 16 35 H 0.07 0.73 6.28 -51.93 -0.33 0.40 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.39 6.02 8.44 45.56 0.38 6.41 16 39 H 0.41 7.58 7.61 -40.82 -0.31 7.27 16 40 H 0.06 1.47 7.01 -51.93 -0.36 1.10 16 41 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 45 H 0.09 1.94 7.01 -51.93 -0.36 1.57 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 47 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -33.37 382.29 -7.37 -40.74 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -6.45 Total: 14.56 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.19 Total: -5.02 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.18 Total: -44.34 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.46 Total: -28.84 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.21 Total: 17.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.37 -7.37 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435954801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.000 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds