Wall clock time and date at job start Tue Mar 31 2020 20:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40189 * 120.36285 * 2 1 4 4 C 1.35348 * 119.94641 * 179.69894 * 3 2 1 5 5 N 1.35770 * 120.70282 * 0.28118 * 4 3 2 6 6 C 1.46496 * 119.62606 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46917 * 89.99673 * 6 5 4 8 8 C 1.52996 * 109.47157 * 304.99608 * 7 6 5 9 9 O 1.42901 * 109.47468 * 64.99831 * 7 6 5 10 10 C 1.50709 * 109.46903 * 184.99863 * 7 6 5 11 11 O 1.21277 * 119.99855 * 26.28585 * 10 7 6 12 12 N 1.34773 * 119.99904 * 206.28165 * 10 7 6 13 13 C 1.46496 * 120.00030 * 185.03709 * 12 10 7 14 14 C 1.53001 * 109.47619 * 175.28566 * 13 12 10 15 15 C 1.50701 * 115.54656 * 63.66707 * 14 13 12 16 16 H 1.08001 * 120.00476 * 268.59903 * 15 14 13 17 17 C 1.37882 * 119.99865 * 88.60067 * 15 14 13 18 18 N 1.31510 * 120.00376 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99703 * 0.06330 * 17 15 14 20 20 H 1.48502 * 109.46948 * 92.15212 * 19 17 15 21 21 H 1.48499 * 109.46850 * 212.14949 * 19 17 15 22 22 H 1.48500 * 109.47210 * 332.14843 * 19 17 15 23 23 C 1.52995 * 117.49764 * 278.00592 * 14 13 12 24 24 C 1.52993 * 117.50349 * 209.34314 * 14 13 12 25 25 C 1.34665 * 120.74589 * 359.97438 * 5 4 3 26 26 O 1.22059 * 119.98128 * 180.02562 * 25 5 4 27 27 C 1.36396 * 120.36693 * 180.23368 * 2 1 3 28 28 H 1.08995 * 109.47373 * 90.00771 * 1 2 3 29 29 H 1.09000 * 109.46842 * 210.00249 * 1 2 3 30 30 H 1.08995 * 109.47091 * 330.00036 * 1 2 3 31 31 H 1.07998 * 120.03166 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.65317 * 180.25165 * 4 3 2 33 33 H 1.09000 * 109.46899 * 209.99062 * 6 5 4 34 34 H 1.08997 * 109.47147 * 329.99639 * 6 5 4 35 35 H 1.09000 * 109.47507 * 60.00624 * 8 7 6 36 36 H 1.09002 * 109.47463 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.47364 * 300.00321 * 8 7 6 38 38 H 0.96703 * 113.99364 * 55.64429 * 9 7 6 39 39 H 0.97004 * 120.00358 * 5.03895 * 12 10 7 40 40 H 1.09004 * 109.47046 * 295.29028 * 13 12 10 41 41 H 1.09005 * 109.47249 * 55.28510 * 13 12 10 42 42 H 0.96999 * 120.00689 * 180.02562 * 18 17 15 43 43 H 1.08997 * 117.50404 * 359.97438 * 23 14 13 44 44 H 1.09006 * 117.49871 * 145.01800 * 23 14 13 45 45 H 1.09003 * 117.49795 * 214.98226 * 24 14 13 46 46 H 1.09004 * 117.49635 * 359.97298 * 24 14 13 47 47 H 1.08001 * 120.35167 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5691 1.1998 0.0062 5 7 4.2538 0.0274 0.0067 6 6 5.7187 0.0443 0.0128 7 6 6.2226 0.0473 1.4575 8 6 5.5958 1.2204 2.2137 9 8 5.8560 -1.1792 2.0925 10 6 7.7230 0.1884 1.4658 11 8 8.2856 0.7373 0.5422 12 7 8.4396 -0.2952 2.4998 13 6 9.8845 -0.0617 2.5624 14 6 10.4327 -0.6079 3.8823 15 6 10.3085 -2.0979 4.0706 16 1 9.4363 -2.5101 4.5563 17 6 11.3084 -2.9351 3.6229 18 7 11.1998 -4.2355 3.7868 19 14 12.8178 -2.2222 2.7845 20 1 13.8777 -1.9797 3.7960 21 1 13.3164 -3.1798 1.7650 22 1 12.4593 -0.9403 2.1261 23 6 10.2943 0.2751 5.1240 24 6 11.6657 0.0785 4.4731 25 6 3.6017 -1.1508 0.0015 26 8 4.2313 -2.1965 0.0025 27 6 2.1966 -1.1768 -0.0048 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6822 2.1486 -0.0004 32 1 4.1102 2.1344 0.0103 33 1 6.0944 -0.8405 -0.5011 34 1 6.0739 0.9394 -0.4978 35 1 4.5106 1.1184 2.2078 36 1 5.9551 1.2228 3.2428 37 1 5.8755 2.1560 1.7294 38 1 6.1633 -1.9697 1.6280 39 1 7.9986 -0.7979 3.2025 40 1 10.3709 -0.5690 1.7292 41 1 10.0826 1.0085 2.5018 42 1 11.9034 -4.8244 3.4722 43 1 9.8131 1.2453 5.0007 44 1 10.1139 -0.2218 6.0773 45 1 12.3870 -0.5476 4.9984 46 1 12.0867 0.9190 3.9213 47 1 1.6684 -2.1188 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435954801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:23 Heat of formation + Delta-G solvation = -87.497562 kcal Electronic energy + Delta-G solvation = -29548.157778 eV Core-core repulsion = 25503.335776 eV Total energy + Delta-G solvation = -4044.822002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.60634 -41.10013 -38.99078 -38.04939 -38.04010 -36.14974 -34.97478 -34.23869 -32.68588 -31.02489 -29.87591 -28.59530 -27.51305 -27.22372 -24.60394 -24.05755 -23.35399 -22.33091 -21.29894 -20.88578 -19.50890 -18.57071 -18.46404 -17.81372 -17.65898 -16.97415 -16.91741 -16.90957 -16.48541 -15.99279 -15.53751 -15.38209 -15.13980 -14.98386 -14.79027 -14.62010 -14.29009 -14.13666 -13.84798 -13.54621 -13.50510 -13.41415 -13.29954 -13.12669 -13.02736 -12.84160 -12.82607 -12.71023 -12.39938 -12.20621 -12.00227 -11.88502 -11.59065 -11.04431 -11.01585 -10.83370 -10.70352 -10.54211 -10.28558 -9.96759 -8.92043 -8.32317 -6.40046 -0.07297 0.97347 1.31122 1.37001 1.40660 1.47486 1.54401 2.18147 2.33711 2.68606 2.98699 3.02683 3.18864 3.42467 3.52439 3.64712 3.81338 3.83219 3.98591 4.03494 4.18276 4.33103 4.38334 4.38523 4.41292 4.48046 4.50718 4.61947 4.66820 4.77890 4.83658 4.84356 4.86583 4.94730 5.04598 5.06919 5.15676 5.26265 5.28615 5.43884 5.48538 5.53527 5.66691 5.71224 6.12995 6.24195 6.27001 6.59548 6.70272 7.06611 7.11977 7.30898 8.82518 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.002857 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.416506 B = 9799.206863 C =10266.035383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.032 3.968 3 C -0.226 4.226 4 C 0.131 3.869 5 N -0.486 5.486 6 C 0.082 3.918 7 C 0.113 3.887 8 C -0.136 4.136 9 O -0.550 6.550 10 C 0.488 3.512 11 O -0.576 6.576 12 N -0.690 5.690 13 C 0.163 3.837 14 C -0.041 4.041 15 C -0.482 4.482 16 H 0.040 0.960 17 C 0.023 3.977 18 N -0.945 5.945 19 Si 0.934 3.066 20 H -0.266 1.266 21 H -0.305 1.305 22 H -0.237 1.237 23 C -0.153 4.153 24 C -0.190 4.190 25 C 0.502 3.498 26 O -0.605 6.605 27 C -0.290 4.290 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.185 0.815 32 H 0.201 0.799 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.387 0.613 39 H 0.411 0.589 40 H 0.036 0.964 41 H 0.067 0.933 42 H 0.264 0.736 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.347 19.166 -7.231 28.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.028 3.972 3 C -0.248 4.248 4 C 0.005 3.995 5 N -0.195 5.195 6 C -0.041 4.041 7 C 0.068 3.932 8 C -0.193 4.193 9 O -0.357 6.357 10 C 0.273 3.727 11 O -0.457 6.457 12 N -0.339 5.339 13 C 0.039 3.961 14 C -0.042 4.042 15 C -0.520 4.520 16 H 0.058 0.942 17 C -0.175 4.175 18 N -0.585 5.585 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.232 1.232 22 H -0.160 1.160 23 C -0.190 4.190 24 C -0.227 4.227 25 C 0.307 3.693 26 O -0.492 6.492 27 C -0.312 4.312 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.203 0.797 32 H 0.218 0.782 33 H 0.098 0.902 34 H 0.154 0.846 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.236 0.764 39 H 0.248 0.752 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.121 0.879 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.701 19.135 -7.450 28.457 hybrid contribution 1.324 -1.772 -0.329 2.236 sum -18.377 17.364 -7.779 26.452 Atomic orbital electron populations 1.21031 0.88125 1.04604 1.04166 1.20620 0.98398 0.92086 0.86135 1.21050 0.92139 0.99762 1.11854 1.22738 0.94344 0.89835 0.92552 1.45327 1.07766 1.07516 1.58892 1.22359 0.78494 1.06767 0.96471 1.21760 0.88761 0.88815 0.93884 1.21896 1.01954 0.94404 1.01084 1.86533 1.80050 1.15224 1.53882 1.21500 0.90709 0.78713 0.81775 1.90655 1.73126 1.46045 1.35917 1.45878 1.08778 1.54040 1.25193 1.20949 0.79863 0.98355 0.96919 1.19437 1.00528 0.92680 0.91583 1.20370 1.05076 0.88890 1.37671 0.94178 1.25790 1.01351 0.94655 0.95713 1.70031 1.35435 1.04407 1.48602 0.85962 0.80023 0.79345 0.78700 1.19144 1.23224 1.15960 1.22884 0.98859 1.00337 0.96897 1.23023 0.91698 1.02782 1.05231 1.17506 0.90145 0.82726 0.78893 1.90901 1.70151 1.32237 1.55900 1.21894 0.91542 1.00765 1.16956 0.88784 0.91056 0.88460 0.79744 0.78199 0.90200 0.84640 0.89711 0.90984 0.87638 0.76367 0.75248 0.94562 0.91462 0.92675 0.87639 0.89937 0.90425 0.87898 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.03 71.24 0.71 -0.18 16 2 C 0.03 0.44 5.89 -19.82 -0.12 0.33 16 3 C -0.23 -2.13 9.71 22.08 0.21 -1.91 16 4 C 0.13 1.54 8.04 83.42 0.67 2.21 16 5 N -0.49 -10.36 2.26 -650.98 -1.47 -11.83 16 6 C 0.08 1.97 4.30 86.38 0.37 2.34 16 7 C 0.11 2.96 1.11 -11.54 -0.01 2.95 16 8 C -0.14 -2.55 7.96 71.98 0.57 -1.97 16 9 O -0.55 -17.43 11.14 -140.74 -1.57 -19.00 16 10 C 0.49 16.13 6.71 87.66 0.59 16.72 16 11 O -0.58 -21.43 16.01 -3.02 -0.05 -21.47 16 12 N -0.69 -25.17 5.41 -463.06 -2.50 -27.67 16 13 C 0.16 6.52 5.18 86.38 0.45 6.97 16 14 C -0.04 -1.75 0.86 -52.93 -0.05 -1.80 16 15 C -0.48 -26.07 9.13 25.60 0.23 -25.84 16 16 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16 17 C 0.02 1.31 5.47 84.66 0.46 1.77 16 18 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 19 Si 0.93 44.39 24.78 68.60 1.70 46.08 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 22 H -0.24 -10.33 5.83 99.48 0.58 -9.75 16 23 C -0.15 -5.41 9.96 30.62 0.30 -5.11 16 24 C -0.19 -7.17 7.42 30.62 0.23 -6.94 16 25 C 0.50 14.49 7.02 84.82 0.60 15.09 16 26 O -0.60 -23.16 15.40 2.73 0.04 -23.11 16 27 C -0.29 -6.63 9.65 22.40 0.22 -6.41 16 28 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 30 H 0.10 0.30 8.10 -2.39 -0.02 0.28 16 31 H 0.19 0.28 8.06 -2.91 -0.02 0.25 16 32 H 0.20 0.69 7.94 -2.91 -0.02 0.67 16 33 H 0.08 2.39 7.39 -2.39 -0.02 2.37 16 34 H 0.14 2.57 7.55 -2.39 -0.02 2.55 16 35 H 0.08 1.41 6.28 -2.39 -0.01 1.39 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.39 13.09 8.44 -74.06 -0.63 12.47 16 39 H 0.41 15.35 7.61 -92.71 -0.71 14.65 16 40 H 0.04 1.64 7.01 -2.39 -0.02 1.62 16 41 H 0.07 2.42 8.10 -2.38 -0.02 2.40 16 42 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 45 H 0.08 3.15 7.01 -2.39 -0.02 3.14 16 46 H 0.10 3.34 8.14 -2.38 -0.02 3.32 16 47 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -78.59 382.29 1.44 -77.15 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: -0.46 Total: 40.13 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 5.45 Total: -1.81 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -3.67 Total: -97.97 kcal Atomic # 8 Polarization: -62.01 SS G_CDS: -1.57 Total: -63.59 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.70 Total: 46.08 kcal Total: -78.59 1.44 -77.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435954801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.348 kcal (2) G-P(sol) polarization free energy of solvation -78.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds