Wall clock time and date at job start Tue Mar 31 2020 17:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35023 * 119.55999 * 2 1 4 4 C 1.40921 * 119.80736 * 180.02562 * 3 2 1 5 5 O 1.35447 * 120.51225 * 180.02562 * 4 3 2 6 6 C 1.38260 * 118.97673 * 359.97438 * 4 3 2 7 7 C 1.39972 * 119.12438 * 359.77883 * 6 4 3 8 8 O 1.22122 * 119.93099 * 180.22314 * 7 6 4 9 9 N 1.34597 * 120.13907 * 0.47745 * 7 6 4 10 10 C 1.46505 * 119.46622 * 179.77043 * 9 7 6 11 11 C 1.53002 * 109.47201 * 269.72892 * 10 9 7 12 12 C 1.50701 * 109.46946 * 179.97438 * 11 10 9 13 13 O 1.21276 * 120.00166 * 359.97438 * 12 11 10 14 14 N 1.34780 * 119.99585 * 179.97438 * 12 11 10 15 15 C 1.46926 * 120.62730 * 180.02562 * 14 12 11 16 16 C 1.53191 * 108.89109 * 126.46248 * 15 14 12 17 17 C 1.53044 * 109.31440 * 54.56430 * 16 15 14 18 18 C 1.50696 * 109.46055 * 178.62547 * 17 16 15 19 19 H 1.08006 * 119.99855 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00185 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00067 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00259 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47295 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47122 * 120.00044 * 22 20 18 25 25 H 1.48498 * 109.47531 * 240.00539 * 22 20 18 26 26 C 1.53040 * 109.53662 * 298.63203 * 17 16 15 27 27 C 1.46957 * 120.65462 * 359.81587 * 14 12 11 28 28 H 1.09001 * 109.46644 * 269.98017 * 1 2 3 29 29 H 1.09004 * 109.46937 * 29.97302 * 1 2 3 30 30 H 1.08996 * 109.47619 * 149.97926 * 1 2 3 31 31 H 1.07995 * 120.09503 * 0.02562 * 3 2 1 32 32 H 0.96699 * 114.00322 * 179.97438 * 5 4 3 33 33 H 1.08004 * 120.43562 * 180.02562 * 6 4 3 34 34 H 1.08997 * 109.47073 * 149.72315 * 10 9 7 35 35 H 1.09002 * 109.46762 * 29.72462 * 10 9 7 36 36 H 1.09002 * 109.47153 * 59.99546 * 11 10 9 37 37 H 1.08999 * 109.46626 * 299.99922 * 11 10 9 38 38 H 1.09002 * 109.58861 * 6.60251 * 15 14 12 39 39 H 1.08996 * 109.58519 * 246.32142 * 15 14 12 40 40 H 1.09003 * 109.49294 * 174.51508 * 16 15 14 41 41 H 1.09001 * 109.49969 * 294.57596 * 16 15 14 42 42 H 1.08994 * 109.45986 * 58.65006 * 17 16 15 43 43 H 0.96999 * 120.00746 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.49643 * 181.31582 * 26 17 16 45 45 H 1.08994 * 109.49843 * 301.38341 * 26 17 16 46 46 H 1.09001 * 109.46843 * 113.75468 * 27 14 12 47 47 H 1.08997 * 109.71602 * 353.46961 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1745 0.0000 4 6 3.5823 1.1806 -0.0005 5 8 4.2650 2.3504 0.0000 6 6 4.2574 -0.0261 -0.0005 7 6 3.5229 -1.2176 0.0047 8 8 4.1040 -2.2916 0.0089 9 7 2.1774 -1.1821 0.0000 10 6 1.4233 -2.4382 0.0005 11 6 1.1599 -2.8755 -1.4418 12 6 0.3848 -4.1679 -1.4412 13 8 0.0741 -4.6882 -0.3907 14 7 0.0369 -4.7455 -2.6082 15 6 -0.7193 -6.0051 -2.6238 16 6 -1.9699 -5.8222 -3.4894 17 6 -1.5575 -5.3196 -4.8749 18 6 -2.7824 -5.1707 -5.7400 19 1 -3.7572 -5.4108 -5.3418 20 6 -2.6586 -4.7279 -7.0398 21 7 -1.4716 -4.4359 -7.5249 22 14 -4.1768 -4.5439 -8.1124 23 1 -5.3814 -4.9342 -7.3365 24 1 -4.3063 -3.1304 -8.5488 25 1 -4.0500 -5.4204 -9.3045 26 6 -0.8603 -3.9638 -4.7409 27 6 0.4024 -4.1254 -3.8894 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3634 -0.8897 -0.5141 31 1 1.6275 2.1065 0.0004 32 1 5.2262 2.2450 -0.0001 33 1 5.3372 -0.0489 -0.0005 34 1 0.4736 -2.2916 0.5150 35 1 1.9998 -3.2077 0.5140 36 1 2.1097 -3.0220 -1.9562 37 1 0.5836 -2.1059 -1.9552 38 1 -1.0134 -6.2674 -1.6075 39 1 -0.0990 -6.7985 -3.0409 40 1 -2.4870 -6.7767 -3.5876 41 1 -2.6335 -5.0954 -3.0208 42 1 -0.8746 -6.0354 -5.3324 43 1 -1.3844 -4.1248 -8.4395 44 1 -0.5878 -3.5956 -5.7299 45 1 -1.5343 -3.2540 -4.2614 46 1 1.1155 -4.7634 -4.4115 47 1 0.8498 -3.1477 -3.7104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526122581.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:29 Heat of formation + Delta-G solvation = -115.417545 kcal Electronic energy + Delta-G solvation = -29125.046109 eV Core-core repulsion = 25079.013406 eV Total energy + Delta-G solvation = -4046.032703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.63365 -41.14861 -39.50097 -38.53180 -38.11190 -35.35194 -35.13081 -33.22650 -32.59869 -32.01306 -31.20002 -28.40702 -28.13226 -26.19258 -24.55591 -23.89042 -23.76060 -22.97929 -21.42825 -19.82691 -19.70633 -18.90072 -18.39482 -18.23721 -17.43798 -17.20453 -16.80054 -16.56667 -16.48196 -16.39430 -15.37469 -15.09228 -14.90231 -14.87996 -14.77923 -14.66808 -14.46895 -14.41807 -14.21122 -14.05637 -13.80988 -13.61216 -13.19144 -13.11321 -13.01038 -12.82177 -12.71973 -12.42430 -12.25636 -12.14198 -12.02583 -11.90790 -11.48419 -11.19049 -11.03012 -11.00184 -10.71342 -10.39398 -10.22391 -9.59102 -9.02863 -8.07285 -6.20367 -0.14300 0.86150 1.41058 1.44967 1.48404 1.53501 1.54561 2.09237 2.44922 2.57680 2.69000 3.19618 3.38472 3.55618 3.63054 3.68940 3.98804 4.04414 4.08856 4.16784 4.25577 4.29145 4.35869 4.38759 4.46746 4.56906 4.61051 4.66192 4.70306 4.70347 4.86460 4.89031 4.97372 5.05532 5.07935 5.14906 5.19746 5.24685 5.42841 5.50194 5.52077 5.65571 5.99058 6.10234 6.14291 6.39149 6.44767 6.52647 6.89620 7.00111 7.07992 7.47700 8.96276 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.002655 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.079333 B =10542.787227 C =11382.865895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.199 3.801 3 C -0.251 4.251 4 C 0.264 3.736 5 O -0.461 6.461 6 C -0.396 4.396 7 C 0.516 3.484 8 O -0.610 6.610 9 N -0.501 5.501 10 C 0.111 3.889 11 C -0.145 4.145 12 C 0.519 3.481 13 O -0.581 6.581 14 N -0.602 5.602 15 C 0.116 3.884 16 C -0.112 4.112 17 C 0.043 3.957 18 C -0.531 4.531 19 H 0.048 0.952 20 C 0.017 3.983 21 N -0.912 5.912 22 Si 0.948 3.052 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.284 1.284 26 C -0.113 4.113 27 C 0.112 3.888 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.181 0.819 32 H 0.427 0.573 33 H 0.154 0.846 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.048 0.952 42 H -0.001 1.001 43 H 0.261 0.739 44 H 0.079 0.921 45 H 0.036 0.964 46 H 0.061 0.939 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.895 15.475 14.497 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.090 3.910 3 C -0.274 4.274 4 C 0.210 3.790 5 O -0.266 6.266 6 C -0.419 4.419 7 C 0.323 3.677 8 O -0.498 6.498 9 N -0.212 5.212 10 C -0.011 4.011 11 C -0.185 4.185 12 C 0.308 3.692 13 O -0.463 6.463 14 N -0.333 5.333 15 C -0.006 4.006 16 C -0.150 4.150 17 C 0.025 3.975 18 C -0.569 4.569 19 H 0.067 0.933 20 C -0.181 4.181 21 N -0.552 5.552 22 Si 0.775 3.225 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.210 1.210 26 C -0.152 4.152 27 C -0.010 4.010 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.098 0.902 31 H 0.198 0.802 32 H 0.285 0.715 33 H 0.172 0.828 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.017 0.983 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.647 14.865 14.870 22.051 hybrid contribution 0.221 -0.535 -1.079 1.224 sum 6.868 14.330 13.791 21.041 Atomic orbital electron populations 1.21401 0.85128 1.06451 1.06161 1.20918 0.96711 0.83773 0.89559 1.20154 0.90874 0.98751 1.17579 1.19290 0.92075 0.84136 0.83512 1.84783 1.27007 1.27468 1.87296 1.22180 1.01543 0.90489 1.27664 1.16966 0.80929 0.91080 0.78698 1.90946 1.68927 1.33140 1.56811 1.45586 1.07795 1.07671 1.60175 1.21577 0.98058 0.84832 0.96638 1.21916 1.01842 0.95788 0.98961 1.20626 0.79263 0.86414 0.82876 1.90646 1.57710 1.66240 1.31694 1.48263 1.54246 1.24400 1.06404 1.21602 0.93017 0.85137 1.00883 1.21840 0.96006 1.00735 0.96401 1.18627 0.94611 0.93232 0.91058 1.21554 0.93944 1.44035 0.97375 0.93333 1.25628 0.98278 0.95210 0.99029 1.69953 1.23348 1.46043 1.15858 0.85658 0.80429 0.77683 0.78762 1.19594 1.20486 1.21013 1.21765 0.94700 0.99191 0.99495 1.21925 0.97844 0.98347 0.82850 0.86932 0.86038 0.90220 0.80160 0.71496 0.82797 0.86075 0.90065 0.88615 0.85926 0.89786 0.91686 0.91872 0.93339 0.98255 0.92975 0.90263 0.94471 0.92095 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.04 71.24 0.64 -0.45 16 2 C 0.20 2.89 6.65 41.19 0.27 3.16 16 3 C -0.25 -3.25 9.57 22.19 0.21 -3.04 16 4 C 0.26 4.00 6.95 22.93 0.16 4.16 16 5 O -0.46 -4.61 13.58 -87.43 -1.19 -5.80 16 6 C -0.40 -8.27 9.71 22.70 0.22 -8.05 16 7 C 0.52 14.39 7.39 84.69 0.63 15.01 16 8 O -0.61 -22.65 16.61 -5.72 -0.09 -22.75 16 9 N -0.50 -10.90 2.59 -637.15 -1.65 -12.54 16 10 C 0.11 2.61 3.96 86.38 0.34 2.95 16 11 C -0.14 -3.55 4.18 29.85 0.12 -3.43 16 12 C 0.52 16.47 7.70 87.66 0.67 17.14 16 13 O -0.58 -21.32 15.39 -3.02 -0.05 -21.37 16 14 N -0.60 -20.24 2.98 -818.91 -2.44 -22.68 16 15 C 0.12 4.07 6.43 86.36 0.56 4.63 16 16 C -0.11 -4.40 5.30 30.67 0.16 -4.24 16 17 C 0.04 2.02 2.06 -11.51 -0.02 1.99 16 18 C -0.53 -27.77 8.56 25.60 0.22 -27.55 16 19 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 20 C 0.02 0.91 5.30 84.65 0.45 1.36 16 21 N -0.91 -49.38 11.30 21.45 0.24 -49.13 16 22 Si 0.95 41.79 29.54 68.60 2.03 43.81 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 C -0.11 -4.74 5.15 30.66 0.16 -4.58 16 27 C 0.11 3.77 6.33 86.34 0.55 4.31 16 28 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.12 0.45 8.07 -2.38 -0.02 0.43 16 30 H 0.08 0.82 5.58 -2.39 -0.01 0.81 16 31 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.43 0.44 8.75 -74.06 -0.65 -0.20 16 33 H 0.15 2.82 8.00 -2.91 -0.02 2.80 16 34 H 0.12 2.32 6.43 -2.39 -0.02 2.30 16 35 H 0.08 2.42 7.32 -2.39 -0.02 2.40 16 36 H 0.10 2.53 7.95 -2.39 -0.02 2.51 16 37 H 0.12 2.40 6.84 -2.39 -0.02 2.39 16 38 H 0.08 2.90 7.01 -2.39 -0.02 2.88 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 44 H 0.08 3.78 6.03 -2.39 -0.01 3.77 16 45 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.10 2.66 5.95 -2.39 -0.01 2.65 16 Total: -1.00 -73.80 376.64 2.55 -71.25 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.35 Total: 15.83 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 5.34 Total: 3.39 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -3.85 Total: -84.36 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: -1.33 Total: -49.91 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -73.80 2.55 -71.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526122581.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.169 kcal (2) G-P(sol) polarization free energy of solvation -73.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds