Wall clock time and date at job start Tue Mar 31 2020 17:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34484 * 125.57371 * 2 1 4 4 C 1.46691 * 106.33516 * 180.14659 * 3 2 1 5 5 C 1.47262 * 126.93969 * 179.82757 * 4 3 2 6 6 O 1.21632 * 119.99562 * 179.68166 * 5 4 3 7 7 N 1.34773 * 120.00382 * 359.68832 * 5 4 3 8 8 C 1.47582 * 134.49159 * 179.97438 * 7 5 4 9 9 C 1.53943 * 86.11593 * 155.35933 * 8 7 5 10 10 O 1.42895 * 113.74275 * 269.15484 * 9 8 7 11 11 C 1.50706 * 113.74281 * 137.94944 * 9 8 7 12 12 H 1.08001 * 120.00171 * 245.12578 * 11 9 8 13 13 C 1.37878 * 119.99431 * 65.12825 * 11 9 8 14 14 N 1.31506 * 120.00269 * 5.71904 * 13 11 9 15 15 Si 1.86802 * 119.99371 * 185.71945 * 13 11 9 16 16 H 1.48499 * 109.47169 * 269.99357 * 15 13 11 17 17 H 1.48491 * 109.47269 * 30.00097 * 15 13 11 18 18 H 1.48505 * 109.46486 * 150.00036 * 15 13 11 19 19 C 1.47582 * 134.49232 * 0.02562 * 7 5 4 20 20 C 1.36765 * 106.11145 * 359.56854 * 4 3 2 21 21 C 1.50704 * 125.79909 * 180.24170 * 20 4 3 22 22 N 1.34654 * 108.40002 * 0.26128 * 20 4 3 23 23 C 1.46507 * 124.85015 * 180.02562 * 22 20 4 24 24 H 1.09003 * 110.43016 * 273.55987 * 23 22 20 25 25 C 1.54807 * 110.48868 * 36.24575 * 23 22 20 26 26 C 1.55004 * 102.08914 * 97.79667 * 25 23 22 27 27 O 1.44384 * 103.48945 * 37.02538 * 26 25 23 28 28 C 1.43749 * 106.97219 * 319.93916 * 27 26 25 29 29 H 1.09006 * 109.47023 * 270.74021 * 1 2 3 30 30 H 1.09000 * 109.47455 * 30.73984 * 1 2 3 31 31 H 1.08998 * 109.47277 * 150.74590 * 1 2 3 32 32 H 1.07999 * 126.83565 * 359.97438 * 3 2 1 33 33 H 1.08994 * 113.76723 * 41.05827 * 8 7 5 34 34 H 1.09004 * 113.76906 * 269.66198 * 8 7 5 35 35 H 0.96704 * 114.00315 * 172.99928 * 10 9 8 36 36 H 0.96997 * 120.00501 * 355.02952 * 14 13 11 37 37 H 1.09003 * 113.76768 * 90.33821 * 19 7 5 38 38 H 1.09003 * 113.76807 * 318.93882 * 19 7 5 39 39 H 1.09000 * 109.47354 * 88.85368 * 21 20 4 40 40 H 1.08995 * 109.47143 * 208.85977 * 21 20 4 41 41 H 1.08997 * 109.47151 * 328.85486 * 21 20 4 42 42 H 1.08997 * 110.91066 * 215.99394 * 25 23 22 43 43 H 1.09000 * 110.91119 * 339.60316 * 25 23 22 44 44 H 1.08996 * 110.62178 * 278.52391 * 26 25 23 45 45 H 1.09001 * 110.75072 * 155.58896 * 26 25 23 46 46 H 1.09001 * 109.87416 * 267.08849 * 28 27 26 47 47 H 1.09003 * 109.87934 * 145.94450 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2893 1.0938 0.0000 4 6 3.6743 0.6105 -0.0036 5 6 4.8977 1.4302 -0.0085 6 8 5.9892 0.8935 -0.0052 7 7 4.8079 2.7749 -0.0164 8 6 5.7895 3.8770 -0.0224 9 6 4.6779 4.7238 -0.6682 10 8 4.6821 4.6859 -2.0966 11 6 4.5844 6.1237 -0.1179 12 1 3.7039 6.4325 0.4260 13 6 5.6230 7.0102 -0.3088 14 7 6.6446 6.6731 -1.0651 15 14 5.5788 8.6901 0.5070 16 1 4.9120 9.6618 -0.3966 17 1 4.8236 8.6013 1.7824 18 1 6.9659 9.1426 0.7834 19 6 3.6886 3.7368 -0.0215 20 6 3.5997 -0.7551 0.0044 21 6 4.7721 -1.7020 0.0095 22 7 2.3007 -1.1098 0.0065 23 6 1.8099 -2.4902 0.0152 24 1 1.7422 -2.8763 -1.0019 25 6 2.7301 -3.3871 0.8783 26 6 1.9672 -3.4324 2.2269 27 8 0.5801 -3.4695 1.8280 28 6 0.4393 -2.5708 0.7149 29 1 -0.3633 0.0133 1.0276 30 1 -0.3634 0.8833 -0.5253 31 1 -0.3634 -0.8966 -0.5022 32 1 1.9629 2.1233 -0.0004 33 1 6.6436 3.7009 -0.6762 34 1 6.0769 4.2148 0.9733 35 1 3.9244 5.1276 -2.5041 36 1 6.7030 5.7762 -1.4299 37 1 3.3598 4.0334 0.9745 38 1 2.8649 3.4487 -0.6747 39 1 5.0681 -1.9083 1.0381 40 1 4.4892 -2.6333 -0.4809 41 1 5.6072 -1.2491 -0.5249 42 1 2.8172 -4.3843 0.4470 43 1 3.7125 -2.9314 1.0023 44 1 2.1737 -2.5383 2.8149 45 1 2.2291 -4.3289 2.7888 46 1 0.1462 -1.5832 1.0708 47 1 -0.3091 -2.9542 0.0213 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529066921.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:57 Heat of formation + Delta-G solvation = -44.252021 kcal Electronic energy + Delta-G solvation = -29866.231406 eV Core-core repulsion = 25823.284671 eV Total energy + Delta-G solvation = -4042.946735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 8.23 seconds Orbital eigenvalues (eV) -42.99500 -41.17196 -39.93177 -38.88405 -35.91657 -34.74582 -34.43154 -34.15931 -31.28930 -30.59899 -30.29234 -29.01056 -27.26166 -26.76402 -25.73958 -23.96824 -23.48063 -22.40730 -21.45893 -20.53608 -19.73720 -19.09659 -18.22313 -17.73010 -17.32602 -16.93269 -16.67163 -16.61651 -16.35126 -16.10974 -15.69567 -15.57213 -15.00059 -14.80868 -14.70185 -14.41632 -14.28252 -14.05858 -13.91717 -13.79416 -13.63848 -13.46932 -13.44207 -13.38005 -12.96331 -12.82732 -12.59137 -12.51770 -12.39419 -12.13791 -11.99679 -11.87954 -11.75827 -11.08826 -10.96207 -10.70860 -10.60119 -10.18236 -9.77941 -9.50250 -9.01060 -8.57149 -6.44929 0.64523 1.32584 1.56710 1.60493 1.67918 1.84979 2.05311 2.48171 2.61141 2.79037 3.09545 3.17267 3.38346 3.53765 3.66091 3.73622 3.75104 3.86814 3.93336 4.00948 4.11174 4.17156 4.34915 4.37049 4.42924 4.52517 4.53471 4.58535 4.61429 4.66194 4.67222 4.68391 4.72305 4.73760 4.80373 4.83648 4.91218 5.04903 5.08467 5.15803 5.29917 5.65965 5.72226 5.79294 6.03968 6.14937 6.27294 6.54782 6.85543 7.16697 7.22713 7.48699 8.78691 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023248 B = 0.002800 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.140860 B = 9997.914969 C =10551.883555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.017 3.983 3 C -0.185 4.185 4 C -0.258 4.258 5 C 0.592 3.408 6 O -0.605 6.605 7 N -0.631 5.631 8 C 0.124 3.876 9 C 0.204 3.796 10 O -0.577 6.577 11 C -0.637 4.637 12 H 0.069 0.931 13 C -0.012 4.012 14 N -0.920 5.920 15 Si 1.118 2.882 16 H -0.274 1.274 17 H -0.265 1.265 18 H -0.291 1.291 19 C 0.098 3.902 20 C 0.102 3.898 21 C -0.090 4.090 22 N -0.425 5.425 23 C 0.088 3.912 24 H 0.124 0.876 25 C -0.188 4.188 26 C 0.044 3.956 27 O -0.389 6.389 28 C 0.020 3.980 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.377 0.623 36 H 0.267 0.733 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.048 0.952 45 H 0.116 0.884 46 H 0.092 0.908 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.831 -20.312 4.035 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.208 4.208 4 C -0.268 4.268 5 C 0.387 3.613 6 O -0.490 6.490 7 N -0.363 5.363 8 C 0.001 3.999 9 C 0.164 3.836 10 O -0.384 6.384 11 C -0.675 4.675 12 H 0.087 0.913 13 C -0.214 4.214 14 N -0.555 5.555 15 Si 0.939 3.061 16 H -0.199 1.199 17 H -0.190 1.190 18 H -0.217 1.217 19 C -0.024 4.024 20 C -0.016 4.016 21 C -0.147 4.147 22 N -0.102 5.102 23 C -0.013 4.013 24 H 0.142 0.858 25 C -0.225 4.225 26 C -0.032 4.032 27 O -0.308 6.308 28 C -0.056 4.056 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.167 0.833 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.225 0.775 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.066 0.934 45 H 0.134 0.866 46 H 0.110 0.890 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.250 -20.187 4.346 25.670 hybrid contribution -0.311 -0.639 -0.482 0.859 sum -15.561 -20.826 3.864 26.283 Atomic orbital electron populations 1.20770 0.84925 1.04956 1.03674 1.20649 0.95169 0.84552 1.08717 1.22176 0.90224 0.98939 1.09505 1.20046 0.92699 0.93011 1.21009 1.17688 0.88522 0.80169 0.74961 1.90629 1.30663 1.72183 1.55522 1.49890 1.11524 1.03193 1.71690 1.23229 0.94074 0.83351 0.99242 1.20347 0.91202 0.92866 0.79211 1.86337 1.50838 1.80260 1.20940 1.22480 1.06648 0.97846 1.40506 0.91295 1.27248 0.92145 1.07874 0.94170 1.70767 1.32913 1.22191 1.29646 0.82933 0.76154 0.70904 0.76065 1.19919 1.18966 1.21718 1.24022 0.91548 0.85356 1.01505 1.20276 0.86005 0.93260 1.02075 1.20759 0.93272 0.97149 1.03525 1.43852 1.04055 1.06525 1.55779 1.23165 0.96152 0.78749 1.03272 0.85837 1.24181 1.01017 1.01879 0.95444 1.23673 0.80289 1.02866 0.96357 1.88901 1.27550 1.65036 1.49290 1.24421 0.95351 0.96647 0.89202 0.89280 0.89114 0.89189 0.83270 0.94515 0.90108 0.77471 0.92184 0.88708 0.89023 0.89381 0.88106 0.91318 0.86127 0.87181 0.93399 0.86573 0.88995 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 8.28 71.23 0.59 -0.52 16 2 C 0.02 0.38 6.50 40.98 0.27 0.65 16 3 C -0.19 -5.51 9.93 23.62 0.23 -5.27 16 4 C -0.26 -9.35 6.28 -19.04 -0.12 -9.47 16 5 C 0.59 26.94 8.04 86.62 0.70 27.63 16 6 O -0.60 -30.60 15.57 -4.13 -0.06 -30.66 16 7 N -0.63 -28.97 3.61 -844.31 -3.04 -32.02 16 8 C 0.12 6.36 7.25 86.48 0.63 6.99 16 9 C 0.20 9.93 0.94 -10.87 -0.01 9.92 16 10 O -0.58 -28.73 12.65 -148.98 -1.88 -30.62 16 11 C -0.64 -32.75 8.58 25.60 0.22 -32.53 16 12 H 0.07 3.36 7.82 -2.91 -0.02 3.33 16 13 C -0.01 -0.63 5.36 84.66 0.45 -0.18 16 14 N -0.92 -54.99 13.53 21.45 0.29 -54.70 16 15 Si 1.12 47.30 29.91 68.60 2.05 49.35 16 16 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 18 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 19 C 0.10 3.95 6.63 86.49 0.57 4.53 16 20 C 0.10 2.91 6.60 41.78 0.28 3.19 16 21 C -0.09 -2.20 7.69 71.24 0.55 -1.65 16 22 N -0.42 -9.13 2.97 -468.22 -1.39 -10.52 16 23 C 0.09 1.18 3.89 45.98 0.18 1.36 16 24 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 25 C -0.19 -2.20 5.76 31.90 0.18 -2.01 16 26 C 0.04 0.60 7.72 72.67 0.56 1.16 16 27 O -0.39 -6.21 11.52 -148.98 -1.72 -7.93 16 28 C 0.02 0.24 5.66 72.35 0.41 0.65 16 29 H 0.09 0.97 7.19 -2.38 -0.02 0.95 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.09 0.76 6.13 -2.39 -0.01 0.74 16 32 H 0.15 4.26 5.43 -2.91 -0.02 4.25 16 33 H 0.04 2.06 7.81 -2.39 -0.02 2.04 16 34 H 0.08 4.14 8.09 -2.39 -0.02 4.12 16 35 H 0.38 15.87 9.09 -74.05 -0.67 15.20 16 36 H 0.27 16.63 5.82 -92.71 -0.54 16.09 16 37 H 0.09 3.58 8.09 -2.39 -0.02 3.56 16 38 H 0.09 3.25 6.24 -2.39 -0.01 3.24 16 39 H 0.09 1.94 7.29 -2.39 -0.02 1.92 16 40 H 0.10 1.65 6.49 -2.39 -0.02 1.63 16 41 H 0.07 2.17 6.53 -2.39 -0.02 2.15 16 42 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.11 1.52 3.39 -2.39 -0.01 1.51 16 44 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.09 1.17 3.76 -2.39 -0.01 1.16 16 47 H 0.12 0.85 7.97 -2.39 -0.02 0.83 16 Total: -1.00 -77.09 364.03 0.51 -76.58 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: 0.58 Total: 36.05 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 5.69 Total: 4.46 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -4.15 Total: -97.24 kcal Atomic # 8 Polarization: -65.54 SS G_CDS: -3.67 Total: -69.21 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.05 Total: 49.35 kcal Total: -77.09 0.51 -76.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529066921.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.332 kcal (2) G-P(sol) polarization free energy of solvation -77.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.23 seconds