Wall clock time and date at job start Tue Mar 31 2020 20:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.33652 * 125.80620 * 2 1 4 4 C 1.34210 * 110.91129 * 180.26743 * 3 2 1 5 5 C 1.34177 * 109.12524 * 359.76367 * 4 3 2 6 6 C 1.36416 * 125.80025 * 179.86021 * 2 1 3 7 7 C 1.47383 * 127.19280 * 0.02562 * 6 2 1 8 8 O 1.21611 * 119.99905 * 359.70201 * 7 6 2 9 9 N 1.34777 * 119.99914 * 179.70860 * 7 6 2 10 10 C 1.46505 * 119.99715 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.46881 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00306 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00030 * 179.97438 * 11 10 9 14 14 C 1.46926 * 120.63336 * 180.02562 * 13 11 10 15 15 C 1.53191 * 108.89109 * 233.68039 * 14 13 11 16 16 C 1.53035 * 109.31327 * 305.29292 * 15 14 13 17 17 C 1.53007 * 109.46118 * 181.38770 * 16 15 14 18 18 C 1.50699 * 109.47144 * 174.99788 * 17 16 15 19 19 H 1.07998 * 120.00041 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99734 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99659 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00304 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47023 * 89.99989 * 22 20 18 24 24 H 1.48496 * 109.47296 * 210.00080 * 22 20 18 25 25 H 1.48508 * 109.46806 * 330.00272 * 22 20 18 26 26 C 1.53038 * 109.54175 * 61.36680 * 16 15 14 27 27 C 1.47207 * 120.81118 * 0.14238 * 13 11 10 28 28 H 1.09011 * 109.47050 * 270.14103 * 1 2 3 29 29 H 1.09004 * 109.47095 * 30.13643 * 1 2 3 30 30 H 1.08999 * 109.47420 * 150.14437 * 1 2 3 31 31 H 1.08001 * 125.44001 * 179.75769 * 4 3 2 32 32 H 1.08006 * 127.02424 * 179.97438 * 5 4 3 33 33 H 0.96994 * 119.99969 * 359.97438 * 9 7 6 34 34 H 1.08992 * 109.47250 * 59.99678 * 10 9 7 35 35 H 1.09000 * 109.46990 * 299.99177 * 10 9 7 36 36 H 1.09002 * 109.58861 * 113.82042 * 14 13 11 37 37 H 1.08996 * 109.58519 * 353.53933 * 14 13 11 38 38 H 1.09003 * 109.49975 * 65.24379 * 15 14 13 39 39 H 1.09000 * 109.49553 * 185.30642 * 15 14 13 40 40 H 1.09005 * 109.46002 * 301.35718 * 16 15 14 41 41 H 1.08996 * 109.46924 * 295.00300 * 17 16 15 42 42 H 1.09004 * 109.46756 * 54.99920 * 17 16 15 43 43 H 0.96997 * 119.99856 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.49557 * 58.58503 * 26 16 15 45 45 H 1.08996 * 109.50003 * 178.68400 * 26 16 15 46 46 H 1.08996 * 109.53610 * 6.53286 * 27 13 11 47 47 H 1.09002 * 109.68003 * 246.22753 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7389 -0.0059 5 6 3.6849 -0.5992 -0.0047 6 6 2.3049 -1.1064 0.0027 7 6 1.8739 -2.5158 0.0056 8 8 0.6889 -2.7892 0.0113 9 7 2.7929 -3.5016 0.0022 10 6 2.3644 -4.9025 0.0056 11 6 3.5761 -5.7985 0.0000 12 8 4.6882 -5.3145 -0.0067 13 7 3.4240 -7.1376 0.0025 14 6 4.5957 -8.0241 -0.0023 15 6 4.4673 -9.0095 -1.1682 16 6 3.1282 -9.7431 -1.0658 17 6 3.0115 -10.7530 -2.2093 18 6 1.7506 -11.5607 -2.0394 19 1 1.0980 -11.3728 -1.1997 20 6 1.4307 -12.5402 -2.9555 21 7 0.3301 -13.2447 -2.8075 22 14 2.5605 -12.8666 -4.4069 23 1 3.5646 -13.8943 -4.0312 24 1 1.7594 -13.3548 -5.5579 25 1 3.2560 -11.6101 -4.7852 26 6 1.9826 -8.7327 -1.1591 27 6 2.0827 -7.7442 0.0075 28 1 -0.3634 0.0025 1.0278 29 1 -0.3633 0.8888 -0.5160 30 1 -0.3634 -0.8912 -0.5116 31 1 4.4172 1.4283 -0.0108 32 1 4.5928 -1.1841 -0.0087 33 1 3.7380 -3.2835 -0.0026 34 1 1.7624 -5.1006 -0.8812 35 1 1.7711 -5.0988 0.8988 36 1 4.6417 -8.5742 0.9376 37 1 5.5021 -7.4310 -0.1232 38 1 4.5127 -8.4650 -2.1114 39 1 5.2826 -9.7317 -1.1256 40 1 3.0733 -10.2671 -0.1116 41 1 2.9777 -10.2223 -3.1607 42 1 3.8743 -11.4190 -2.1953 43 1 0.1052 -13.9341 -3.4518 44 1 2.0513 -8.1908 -2.1024 45 1 1.0290 -9.2583 -1.1096 46 1 1.3298 -6.9647 -0.1082 47 1 1.9216 -8.2710 0.9481 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582907164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:58 Heat of formation + Delta-G solvation = -70.493651 kcal Electronic energy + Delta-G solvation = -28164.148247 eV Core-core repulsion = 24120.063590 eV Total energy + Delta-G solvation = -4044.084657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.92227 -40.47999 -39.33697 -37.58045 -34.73075 -34.20285 -33.37335 -32.28910 -32.16378 -31.05705 -29.10844 -28.16749 -26.87437 -24.66170 -23.46631 -22.94756 -21.74840 -21.20859 -20.36994 -19.88583 -18.93080 -18.28061 -17.03918 -16.72681 -16.70774 -16.50406 -16.02100 -15.85957 -15.35454 -14.79850 -14.63465 -14.37687 -13.93316 -13.80389 -13.62755 -13.45394 -13.41309 -13.26640 -13.22902 -13.17897 -12.84126 -12.53991 -12.33496 -12.17009 -12.08974 -11.52883 -11.21139 -10.97433 -10.71720 -10.40540 -10.28104 -10.18753 -10.11477 -9.80457 -9.75608 -9.55507 -9.41802 -9.11487 -8.91806 -8.58608 -8.56646 -6.07820 -4.05542 1.03114 1.69011 2.39608 2.42578 2.66286 3.09036 3.21427 3.27789 3.36100 3.39142 4.14980 4.25676 4.42119 4.49670 4.50561 4.90674 4.97831 5.09287 5.15347 5.17197 5.19627 5.21641 5.24538 5.31302 5.34005 5.37054 5.48389 5.53557 5.61671 5.79826 5.82394 5.90636 5.91627 6.06011 6.17408 6.21181 6.35065 6.48714 6.64655 6.72206 6.79420 6.89311 7.19610 7.26033 7.32047 7.39404 7.75864 7.93494 7.99130 8.49311 8.96396 9.55219 11.05288 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.002063 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.401399 B =13569.534035 C =14191.543264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.081 3.919 3 O -0.177 6.177 4 C -0.039 4.039 5 C -0.186 4.186 6 C -0.247 4.247 7 C 0.593 3.407 8 O -0.542 6.542 9 N -0.711 5.711 10 C 0.102 3.898 11 C 0.511 3.489 12 O -0.551 6.551 13 N -0.599 5.599 14 C 0.112 3.888 15 C -0.132 4.132 16 C -0.073 4.073 17 C -0.009 4.009 18 C -0.517 4.517 19 H 0.074 0.926 20 C 0.066 3.934 21 N -0.903 5.903 22 Si 0.878 3.122 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.266 1.266 26 C -0.121 4.121 27 C 0.099 3.901 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.209 0.791 32 H 0.159 0.841 33 H 0.411 0.589 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.263 0.737 44 H 0.059 0.941 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.749 26.183 7.477 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.028 3.972 3 O -0.073 6.073 4 C -0.105 4.105 5 C -0.206 4.206 6 C -0.252 4.252 7 C 0.382 3.618 8 O -0.421 6.421 9 N -0.365 5.365 10 C -0.025 4.025 11 C 0.298 3.702 12 O -0.430 6.430 13 N -0.331 5.331 14 C -0.010 4.010 15 C -0.171 4.171 16 C -0.092 4.092 17 C -0.047 4.047 18 C -0.555 4.555 19 H 0.092 0.908 20 C -0.135 4.135 21 N -0.542 5.542 22 Si 0.705 3.295 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.191 1.191 26 C -0.159 4.159 27 C -0.023 4.023 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.129 0.871 31 H 0.225 0.775 32 H 0.176 0.824 33 H 0.249 0.751 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.099 0.901 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.298 26.349 7.398 27.876 hybrid contribution 1.261 -0.565 -0.863 1.629 sum 6.558 25.784 6.535 27.396 Atomic orbital electron populations 1.20643 0.83588 1.05237 1.04525 1.22851 0.94179 0.83044 0.97103 1.83778 1.17217 1.34943 1.71314 1.23865 0.83492 0.96392 1.06755 1.22934 0.96744 0.94627 1.06252 1.21053 0.93478 0.93542 1.17088 1.17124 0.85197 0.83687 0.75822 1.90774 1.16449 1.84046 1.50826 1.45482 1.11000 1.04588 1.75466 1.21128 0.95421 0.80926 1.05070 1.20385 0.90425 0.83000 0.76400 1.90654 1.26371 1.74469 1.51522 1.48189 1.08717 1.04759 1.71466 1.21689 0.88152 0.91848 0.99268 1.22068 0.99631 0.97745 0.97609 1.21018 0.91654 0.95430 1.01055 1.19618 0.97384 0.94008 0.93656 1.21121 1.06010 1.17148 1.11204 0.90812 1.25033 0.95001 0.95716 0.97787 1.69908 1.24440 1.23043 1.36813 0.86813 0.81043 0.78903 0.82696 1.20388 1.21476 1.19097 1.21926 1.01558 0.96053 0.96339 1.22116 0.81980 0.97395 1.00819 0.89207 0.90310 0.87143 0.77476 0.82370 0.75062 0.87962 0.88147 0.91396 0.89523 0.92025 0.90967 0.91616 0.96673 0.97019 0.92767 0.92191 0.88852 0.90077 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.89 36.00 0.36 -0.28 16 2 C 0.08 0.78 7.37 -34.97 -0.26 0.53 16 3 O -0.18 -1.55 10.52 7.67 0.08 -1.47 16 4 C -0.04 -0.27 12.03 29.30 0.35 0.08 16 5 C -0.19 -1.54 10.60 -37.45 -0.40 -1.94 16 6 C -0.25 -2.62 6.31 -103.27 -0.65 -3.27 16 7 C 0.59 7.25 7.81 -12.54 -0.10 7.15 16 8 O -0.54 -7.73 14.85 5.27 0.08 -7.66 16 9 N -0.71 -8.06 5.52 -62.58 -0.35 -8.41 16 10 C 0.10 1.14 4.51 -5.19 -0.02 1.12 16 11 C 0.51 6.67 7.77 -10.99 -0.09 6.59 16 12 O -0.55 -8.43 15.08 5.55 0.08 -8.35 16 13 N -0.60 -7.76 2.98 -172.52 -0.51 -8.28 16 14 C 0.11 1.48 6.42 -3.71 -0.02 1.46 16 15 C -0.13 -1.97 5.36 -26.61 -0.14 -2.11 16 16 C -0.07 -1.28 2.10 -90.58 -0.19 -1.47 16 17 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 18 C -0.52 -13.81 8.94 -34.44 -0.31 -14.12 16 19 H 0.07 2.09 7.30 -52.49 -0.38 1.71 16 20 C 0.07 1.85 5.47 -17.82 -0.10 1.76 16 21 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 22 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 26 C -0.12 -1.92 5.19 -26.59 -0.14 -2.06 16 27 C 0.10 1.22 6.35 -3.53 -0.02 1.20 16 28 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.11 0.99 6.49 -51.93 -0.34 0.65 16 31 H 0.21 0.59 8.06 -52.49 -0.42 0.16 16 32 H 0.16 1.03 7.74 -52.48 -0.41 0.63 16 33 H 0.41 4.43 6.61 -40.82 -0.27 4.16 16 34 H 0.10 1.13 7.70 -51.93 -0.40 0.73 16 35 H 0.10 1.03 7.95 -51.93 -0.41 0.62 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.17 7.00 -51.93 -0.36 0.80 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 42 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.09 1.66 6.91 -51.93 -0.36 1.30 16 46 H 0.08 0.84 5.97 -51.93 -0.31 0.53 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -33.24 380.73 -7.58 -40.83 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.98 Total: 2.97 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.83 Total: -5.68 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.09 Total: -43.00 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.24 Total: -17.47 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.24 -7.58 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582907164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.668 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds