Wall clock time and date at job start Tue Mar 31 2020 20:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34873 * 116.99810 * 2 1 4 4 O 1.21601 * 119.99865 * 0.02562 * 3 2 1 5 5 C 1.46633 * 119.99839 * 180.02562 * 3 2 1 6 6 N 1.37831 * 125.85958 * 359.97438 * 5 3 2 7 7 H 0.97003 * 125.39373 * 0.02562 * 6 5 3 8 8 C 1.34234 * 109.20889 * 180.02562 * 6 5 3 9 9 C 1.50698 * 125.79339 * 180.02562 * 8 6 5 10 10 C 1.38239 * 108.41191 * 359.97438 * 8 6 5 11 11 C 1.47403 * 126.45440 * 179.97438 * 10 8 6 12 12 O 1.21611 * 119.99616 * 90.02336 * 11 10 8 13 13 N 1.34773 * 120.00038 * 270.02665 * 11 10 8 14 14 C 1.46924 * 120.63181 * 0.02562 * 13 11 10 15 15 C 1.53193 * 108.77890 * 126.43504 * 14 13 11 16 16 C 1.53043 * 109.31161 * 54.63115 * 15 14 13 17 17 C 1.53041 * 109.54043 * 298.63799 * 16 15 14 18 18 H 1.09004 * 109.49631 * 301.38319 * 17 16 15 19 19 C 1.50701 * 109.49762 * 181.32071 * 17 16 15 20 20 H 1.08002 * 119.99761 * 0.05742 * 19 17 16 21 21 C 1.37871 * 119.99694 * 180.34305 * 19 17 16 22 22 N 1.31523 * 119.99908 * 179.72112 * 21 19 17 23 23 Si 1.86800 * 120.00405 * 359.71709 * 21 19 17 24 24 H 1.48500 * 109.47210 * 90.00069 * 23 21 19 25 25 H 1.48504 * 109.47424 * 210.00300 * 23 21 19 26 26 H 1.48502 * 109.46888 * 330.00390 * 23 21 19 27 27 C 1.46939 * 120.60219 * 180.02562 * 13 11 10 28 28 C 1.36440 * 125.85883 * 180.27705 * 5 3 2 29 29 C 1.50703 * 126.49831 * 359.97438 * 28 5 3 30 30 H 1.09000 * 109.47463 * 59.99935 * 1 2 3 31 31 H 1.09001 * 109.47019 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47175 * 299.99832 * 1 2 3 33 33 H 1.09004 * 109.46988 * 269.99790 * 9 8 6 34 34 H 1.08995 * 109.47076 * 29.99585 * 9 8 6 35 35 H 1.08993 * 109.47096 * 150.00051 * 9 8 6 36 36 H 1.08997 * 109.58638 * 6.64084 * 14 13 11 37 37 H 1.09005 * 109.58531 * 246.22040 * 14 13 11 38 38 H 1.08998 * 109.49507 * 294.68340 * 15 14 13 39 39 H 1.08997 * 109.50085 * 174.58384 * 15 14 13 40 40 H 1.08998 * 109.45690 * 178.61717 * 16 15 14 41 41 H 1.08998 * 109.44508 * 58.65249 * 16 15 14 42 42 H 0.96995 * 120.00181 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.56232 * 113.76855 * 27 13 11 44 44 H 1.08993 * 109.61783 * 353.33052 * 27 13 11 45 45 H 1.09001 * 109.47359 * 270.13674 * 29 28 5 46 46 H 1.09000 * 109.47118 * 30.13824 * 29 28 5 47 47 H 1.09000 * 109.46931 * 150.14322 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4019 2.2215 0.0005 5 6 3.5286 1.2785 -0.0006 6 7 4.3934 0.2052 -0.0006 7 1 4.1301 -0.7284 -0.0007 8 6 5.6575 0.6566 -0.0006 9 6 6.8987 -0.1981 -0.0013 10 6 5.6277 2.0387 -0.0012 11 6 6.7940 2.9400 -0.0009 12 8 7.2755 3.3117 -1.0539 13 7 7.3269 3.3520 1.1665 14 6 6.7568 2.9110 2.4467 15 6 7.8730 2.2991 3.2990 16 6 9.0168 3.3068 3.4342 17 6 9.5855 3.6246 2.0493 18 1 9.9385 2.7056 1.5814 19 6 10.7327 4.5920 2.1865 20 1 11.0279 4.9446 3.1637 21 6 11.4017 5.0316 1.0639 22 7 12.3995 5.8802 1.1831 23 14 10.8912 4.4219 -0.6263 24 1 9.8598 5.3299 -1.1895 25 1 12.0746 4.4003 -1.5232 26 1 10.3331 3.0506 -0.5101 27 6 8.4892 4.2509 1.1822 28 6 4.2689 2.4246 0.0047 29 6 3.7376 3.8348 0.0116 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 7.1981 -0.4046 1.0263 34 1 6.6930 -1.1369 -0.5154 35 1 7.7026 0.3290 -0.5150 36 1 5.9845 2.1637 2.2647 37 1 6.3255 3.7655 2.9683 38 1 8.2417 1.3926 2.8191 39 1 7.4840 2.0556 4.2876 40 1 9.8018 2.8832 4.0606 41 1 8.6417 4.2224 3.8915 42 1 12.8704 6.1891 0.3935 43 1 8.1994 5.2149 1.6001 44 1 8.8603 4.3871 0.1665 45 1 3.6069 4.1789 -1.0144 46 1 2.7780 3.8591 0.5280 47 1 4.4437 4.4866 0.5262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:01 Heat of formation + Delta-G solvation = -105.394883 kcal Electronic energy + Delta-G solvation = -30075.662286 eV Core-core repulsion = 26030.064198 eV Total energy + Delta-G solvation = -4045.598088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.96733 -41.22038 -40.60673 -38.39671 -37.60032 -35.31439 -34.20195 -33.62808 -32.81992 -32.09935 -29.41244 -29.11223 -27.37074 -26.98259 -26.50756 -23.69502 -23.51651 -22.69313 -21.11248 -20.59586 -19.85437 -19.35145 -18.82955 -18.03176 -17.89408 -17.51412 -16.90074 -16.65369 -16.43416 -15.80980 -15.71292 -15.38737 -15.07102 -14.87086 -14.63071 -14.56444 -14.42381 -14.34399 -14.05383 -13.92181 -13.79557 -13.64476 -13.31502 -13.24991 -13.16665 -13.04551 -12.90438 -12.68205 -12.30936 -12.09221 -11.86078 -11.78103 -11.67598 -11.56140 -11.30134 -11.02801 -10.92184 -10.77387 -9.95718 -9.58449 -9.35189 -8.36990 -6.38485 0.02799 1.05401 1.24766 1.32422 1.39015 1.43095 1.62050 1.82750 1.89157 2.20706 2.26249 3.00552 3.58803 3.61368 3.72879 3.95971 4.00974 4.10298 4.17319 4.26803 4.30169 4.34594 4.39736 4.46677 4.54298 4.59316 4.63783 4.65602 4.67071 4.72180 4.76297 4.90040 4.91565 4.98497 5.00936 5.05294 5.17094 5.22621 5.26174 5.37846 5.42240 5.55424 5.59406 5.65972 5.73039 6.28831 6.29732 6.48726 6.59708 6.70803 7.15900 7.27207 8.79028 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020897 B = 0.003285 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.602383 B = 8521.838165 C = 8699.075424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.543 3.457 4 O -0.520 6.520 5 C -0.053 4.053 6 N -0.492 5.492 7 H 0.445 0.555 8 C 0.136 3.864 9 C -0.100 4.100 10 C -0.246 4.246 11 C 0.585 3.415 12 O -0.595 6.595 13 N -0.597 5.597 14 C 0.109 3.891 15 C -0.124 4.124 16 C -0.098 4.098 17 C 0.007 3.993 18 H 0.021 0.979 19 C -0.509 4.509 20 H 0.051 0.949 21 C 0.029 3.971 22 N -0.938 5.938 23 Si 0.934 3.066 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.261 1.261 27 C 0.107 3.893 28 C -0.034 4.034 29 C -0.093 4.093 30 H 0.062 0.938 31 H 0.136 0.864 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.266 0.734 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.538 -19.377 1.727 31.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.277 6.277 3 C 0.389 3.611 4 O -0.409 6.409 5 C -0.162 4.162 6 N -0.089 5.089 7 H 0.288 0.712 8 C 0.011 3.989 9 C -0.157 4.157 10 C -0.255 4.255 11 C 0.374 3.626 12 O -0.476 6.476 13 N -0.328 5.328 14 C -0.012 4.012 15 C -0.162 4.162 16 C -0.136 4.136 17 C -0.013 4.013 18 H 0.039 0.961 19 C -0.548 4.548 20 H 0.069 0.931 21 C -0.170 4.170 22 N -0.579 5.579 23 Si 0.764 3.236 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.186 1.186 27 C -0.015 4.015 28 C -0.042 4.042 29 C -0.150 4.150 30 H 0.081 0.919 31 H 0.154 0.846 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.539 -18.962 1.122 31.032 hybrid contribution 0.216 0.431 -1.236 1.327 sum -24.323 -18.531 -0.114 30.578 Atomic orbital electron populations 1.23607 0.73681 1.06010 1.02827 1.86529 1.25731 1.31150 1.84314 1.19668 0.86544 0.82125 0.72763 1.90879 1.65731 1.36607 1.47727 1.18405 0.86883 0.87416 1.23448 1.41347 1.03704 1.09484 1.54372 0.71238 1.20900 0.87061 0.91942 0.99007 1.20706 0.90475 0.99054 1.05497 1.19021 0.92261 0.93186 1.20996 1.17983 0.82240 0.79547 0.82860 1.90746 1.64091 1.59610 1.33132 1.48390 1.30459 1.47038 1.06883 1.21950 0.96439 1.00428 0.82411 1.21936 0.95024 0.98197 1.01013 1.21382 0.97546 0.98931 0.95696 1.19403 0.91775 0.95158 0.94923 0.96114 1.21328 1.13886 1.25726 0.93815 0.93065 1.25610 0.94809 0.94792 1.01747 1.69988 1.23289 1.33765 1.30809 0.86118 0.75930 0.80294 0.81255 1.21357 1.22162 1.18569 1.22160 0.86190 0.92926 1.00236 1.19664 0.90337 0.95206 0.98948 1.20408 1.01719 0.90324 1.02596 0.91915 0.84596 0.91573 0.87352 0.87022 0.91929 0.88050 0.90529 0.91432 0.87667 0.92190 0.92575 0.92432 0.92015 0.93329 0.91372 0.89206 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.57 113.37 1.20 1.49 16 2 O -0.36 -5.39 10.58 -57.87 -0.61 -6.00 16 3 C 0.54 11.35 7.93 70.01 0.56 11.91 16 4 O -0.52 -13.40 14.49 19.50 0.28 -13.11 16 5 C -0.05 -1.13 7.02 39.97 0.28 -0.85 16 6 N -0.49 -7.67 6.01 -171.73 -1.03 -8.71 16 7 H 0.44 3.49 8.96 -92.71 -0.83 2.66 16 8 C 0.14 2.80 7.09 42.19 0.30 3.10 16 9 C -0.10 -1.60 10.24 71.24 0.73 -0.87 16 10 C -0.25 -7.14 3.87 -20.12 -0.08 -7.22 16 11 C 0.59 22.52 6.87 86.66 0.60 23.12 16 12 O -0.59 -28.90 16.52 -4.07 -0.07 -28.97 16 13 N -0.60 -21.94 2.97 -822.85 -2.45 -24.39 16 14 C 0.11 2.87 6.34 86.36 0.55 3.42 16 15 C -0.12 -3.09 6.08 30.67 0.19 -2.90 16 16 C -0.10 -3.43 5.11 30.62 0.16 -3.27 16 17 C 0.01 0.32 1.84 -11.47 -0.02 0.30 16 18 H 0.02 0.99 7.21 -2.39 -0.02 0.98 16 19 C -0.51 -28.65 9.15 25.60 0.23 -28.42 16 20 H 0.05 3.10 7.99 -2.91 -0.02 3.07 16 21 C 0.03 1.73 5.45 84.65 0.46 2.19 16 22 N -0.94 -59.21 13.96 21.45 0.30 -58.91 16 23 Si 0.93 50.10 24.32 68.60 1.67 51.77 16 24 H -0.29 -15.86 6.91 99.48 0.69 -15.17 16 25 H -0.29 -15.43 7.11 99.48 0.71 -14.72 16 26 H -0.26 -13.69 6.54 99.48 0.65 -13.04 16 27 C 0.11 4.86 5.11 86.35 0.44 5.30 16 28 C -0.03 -0.90 6.21 -19.54 -0.12 -1.03 16 29 C -0.09 -2.53 9.63 71.24 0.69 -1.85 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.45 7.93 -2.39 -0.02 1.43 16 36 H 0.10 2.22 6.25 -2.39 -0.01 2.21 16 37 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 43 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 44 H 0.05 2.53 2.30 -2.39 -0.01 2.52 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.09 2.28 6.42 -2.39 -0.02 2.27 16 47 H 0.06 1.69 8.05 -2.39 -0.02 1.67 16 Total: -1.00 -81.43 379.02 4.34 -77.09 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.10 Total: 6.82 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 6.15 Total: 4.41 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -3.18 Total: -92.01 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -0.40 Total: -48.09 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 1.67 Total: 51.77 kcal Total: -81.43 4.34 -77.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.301 kcal (2) G-P(sol) polarization free energy of solvation -81.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds