Wall clock time and date at job start Tue Mar 31 2020 20:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34874 * 117.00130 * 2 1 4 4 O 1.21596 * 120.00108 * 0.02562 * 3 2 1 5 5 C 1.46627 * 119.99916 * 180.02562 * 3 2 1 6 6 N 1.37828 * 125.86285 * 359.97438 * 5 3 2 7 7 H 0.97006 * 125.39441 * 0.05339 * 6 5 3 8 8 C 1.34241 * 109.21460 * 180.02562 * 6 5 3 9 9 C 1.50697 * 125.79510 * 180.02562 * 8 6 5 10 10 C 1.38244 * 108.40799 * 0.02562 * 8 6 5 11 11 C 1.47394 * 126.45016 * 179.97438 * 10 8 6 12 12 O 1.21610 * 120.00204 * 90.02694 * 11 10 8 13 13 N 1.34784 * 120.00019 * 270.02190 * 11 10 8 14 14 C 1.46923 * 120.62964 * 359.97438 * 13 11 10 15 15 C 1.53190 * 108.77809 * 233.58685 * 14 13 11 16 16 C 1.53036 * 109.31273 * 305.36826 * 15 14 13 17 17 C 1.53041 * 109.53807 * 61.36337 * 16 15 14 18 18 H 1.08995 * 109.49781 * 58.62126 * 17 16 15 19 19 C 1.50700 * 109.49437 * 178.68398 * 17 16 15 20 20 H 1.07998 * 120.00682 * 0.02562 * 19 17 16 21 21 C 1.37886 * 119.99812 * 179.97438 * 19 17 16 22 22 N 1.31509 * 119.99755 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 119.99944 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47341 * 60.00179 * 23 21 19 25 25 H 1.48501 * 109.46929 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47057 * 300.00156 * 23 21 19 27 27 C 1.46927 * 120.62995 * 179.72134 * 13 11 10 28 28 C 1.36445 * 125.86199 * 180.29407 * 5 3 2 29 29 C 1.50706 * 126.49118 * 359.97438 * 28 5 3 30 30 H 1.08993 * 109.47435 * 59.99802 * 1 2 3 31 31 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46820 * 299.99957 * 1 2 3 33 33 H 1.08998 * 109.47245 * 269.96347 * 9 8 6 34 34 H 1.09002 * 109.47239 * 29.96295 * 9 8 6 35 35 H 1.08994 * 109.46883 * 149.96369 * 9 8 6 36 36 H 1.09007 * 109.58781 * 353.37617 * 14 13 11 37 37 H 1.08998 * 109.58580 * 113.65434 * 14 13 11 38 38 H 1.09001 * 109.49704 * 65.32018 * 15 14 13 39 39 H 1.09002 * 109.49744 * 185.41599 * 15 14 13 40 40 H 1.09000 * 109.46265 * 181.38787 * 16 15 14 41 41 H 1.09009 * 109.45909 * 301.35716 * 16 15 14 42 42 H 0.97004 * 120.00112 * 180.02562 * 22 21 19 43 43 H 1.08998 * 109.58645 * 246.19910 * 27 13 11 44 44 H 1.09001 * 109.58579 * 6.63067 * 27 13 11 45 45 H 1.09002 * 109.47323 * 270.12943 * 29 28 5 46 46 H 1.08991 * 109.47377 * 30.13705 * 29 28 5 47 47 H 1.09006 * 109.46346 * 150.13536 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4021 2.2215 0.0005 5 6 3.5286 1.2784 -0.0006 6 7 4.3934 0.2052 -0.0006 7 1 4.1302 -0.7285 -0.0010 8 6 5.6577 0.6565 -0.0006 9 6 6.8987 -0.1983 -0.0013 10 6 5.6278 2.0386 0.0000 11 6 6.7942 2.9397 0.0007 12 8 7.2754 3.3124 -1.0521 13 7 7.3275 3.3509 1.1683 14 6 6.7568 2.9098 2.4484 15 6 6.4459 4.1439 3.3010 16 6 7.7094 4.9967 3.4367 17 6 8.1603 5.4674 2.0520 18 1 7.3601 6.0409 1.5843 19 6 9.3857 6.3336 2.1897 20 1 9.8021 6.5289 3.1668 21 6 9.9761 6.8761 1.0679 22 7 9.4694 6.6379 -0.1221 23 14 11.4955 7.9492 1.2384 24 1 12.5855 7.1666 1.8745 25 1 11.9324 8.4057 -0.1055 26 1 11.1761 9.1290 2.0818 27 6 8.4938 4.2442 1.1852 28 6 4.2690 2.4245 0.0050 29 6 3.7377 3.8347 0.0124 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 7.1985 -0.4044 1.0262 34 1 6.6928 -1.1374 -0.5149 35 1 7.7024 0.3285 -0.5155 36 1 5.8389 2.3509 2.2660 37 1 7.4739 2.2748 2.9686 38 1 5.6616 4.7293 2.8213 39 1 6.1121 3.8284 4.2895 40 1 7.4973 5.8629 4.0634 41 1 8.5010 4.4029 3.8938 42 1 9.8849 7.0191 -0.9114 43 1 9.3509 3.7181 1.6055 44 1 8.7222 4.5661 0.1692 45 1 3.6071 4.1792 -1.0135 46 1 2.7781 3.8588 0.5287 47 1 4.4438 4.4863 0.5273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:14 Heat of formation + Delta-G solvation = -88.591128 kcal Electronic energy + Delta-G solvation = -29936.694372 eV Core-core repulsion = 25891.824949 eV Total energy + Delta-G solvation = -4044.869423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.82354 -40.12990 -38.88061 -36.66408 -36.48068 -33.36508 -32.96571 -31.94461 -31.43717 -29.68713 -28.60093 -27.93958 -26.33569 -25.08775 -24.75672 -22.41121 -21.75545 -21.48962 -19.68855 -19.28060 -18.72878 -17.72094 -17.03166 -16.67378 -16.40150 -15.87289 -15.68327 -15.08922 -14.76086 -14.44850 -14.22107 -13.75437 -13.59691 -13.55037 -13.45355 -13.04326 -12.91206 -12.85198 -12.65245 -12.48800 -12.41713 -12.32807 -12.17934 -11.95406 -11.78015 -11.51143 -11.08992 -10.94871 -10.86942 -10.58219 -10.48312 -10.32717 -10.17837 -9.82517 -9.35245 -9.07870 -8.87838 -8.70945 -8.38237 -8.22781 -7.65383 -5.94663 -4.03450 1.07816 2.26801 2.37793 2.87108 2.95169 3.29324 3.35258 3.41055 3.42196 3.93466 4.46880 4.60941 4.64112 4.79842 4.88670 4.94083 5.00547 5.20585 5.30325 5.35033 5.38585 5.46740 5.51512 5.58952 5.73267 5.80426 5.81735 5.94725 6.02042 6.07584 6.20989 6.26490 6.30839 6.38659 6.57191 6.67464 6.74421 6.76577 6.92586 7.03452 7.18466 7.22711 7.37195 7.56451 7.69723 7.93356 8.05625 8.34827 8.44278 8.96665 9.02641 9.61794 11.10519 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.003043 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.633610 B = 9198.012782 C = 9432.537039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.368 6.368 3 C 0.538 3.462 4 O -0.495 6.495 5 C -0.061 4.061 6 N -0.520 5.520 7 H 0.423 0.577 8 C 0.107 3.893 9 C -0.096 4.096 10 C -0.208 4.208 11 C 0.581 3.419 12 O -0.532 6.532 13 N -0.597 5.597 14 C 0.113 3.887 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.041 3.959 18 H 0.030 0.970 19 C -0.522 4.522 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.879 5.879 23 Si 0.891 3.109 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.278 1.278 27 C 0.113 3.887 28 C -0.013 4.013 29 C -0.099 4.099 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.264 0.736 43 H 0.042 0.958 44 H 0.122 0.878 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.919 -17.926 2.769 22.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.286 6.286 3 C 0.384 3.616 4 O -0.383 6.383 5 C -0.169 4.169 6 N -0.116 5.116 7 H 0.261 0.739 8 C -0.015 4.015 9 C -0.153 4.153 10 C -0.217 4.217 11 C 0.367 3.633 12 O -0.408 6.408 13 N -0.329 5.329 14 C -0.011 4.011 15 C -0.171 4.171 16 C -0.148 4.148 17 C 0.022 3.978 18 H 0.048 0.952 19 C -0.560 4.560 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.517 5.517 23 Si 0.719 3.281 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.007 4.007 28 C -0.021 4.021 29 C -0.156 4.156 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.140 0.860 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.970 -17.510 2.005 22.489 hybrid contribution 0.410 0.084 0.121 0.435 sum -13.561 -17.426 2.126 22.183 Atomic orbital electron populations 1.23251 0.75709 1.03610 1.02836 1.86536 1.23906 1.33014 1.85117 1.19776 0.86841 0.81675 0.73341 1.90885 1.65276 1.35538 1.46572 1.18476 0.86272 0.87551 1.24589 1.41425 1.04920 1.08705 1.56593 0.73869 1.20740 0.85716 0.93137 1.01953 1.20541 0.92759 0.98270 1.03742 1.19534 0.93898 0.92195 1.16106 1.17354 0.81837 0.80034 0.84087 1.90808 1.62082 1.56913 1.31033 1.48457 1.32185 1.47900 1.04317 1.21559 0.97920 0.96451 0.85139 1.21941 0.99777 0.97036 0.98390 1.21628 0.94877 0.97862 1.00415 1.19022 0.96794 0.92370 0.89609 0.95229 1.21045 1.11852 1.30157 0.92976 0.92490 1.25047 0.97272 0.96212 0.95442 1.69881 1.40004 1.44000 0.97772 0.86677 0.83386 0.80908 0.77124 1.20301 1.21293 1.20337 1.22373 0.83149 0.88885 1.06315 1.19684 0.90590 0.94504 0.97327 1.20501 1.01743 0.90208 1.03171 0.91712 0.88120 0.91698 0.89751 0.90855 0.88957 0.91095 0.92399 0.92098 0.92438 0.93112 0.93272 0.92603 0.93982 0.85984 0.90589 0.89969 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.37 -3.72 10.58 -40.97 -0.43 -4.15 16 3 C 0.54 6.93 7.93 34.12 0.27 7.20 16 4 O -0.50 -7.43 14.49 -19.34 -0.28 -7.71 16 5 C -0.06 -0.81 7.02 -82.43 -0.58 -1.39 16 6 N -0.52 -5.52 6.01 -5.63 -0.03 -5.55 16 7 H 0.42 3.01 8.96 -40.82 -0.37 2.64 16 8 C 0.11 1.33 7.20 -81.54 -0.59 0.75 16 9 C -0.10 -0.92 10.24 36.00 0.37 -0.55 16 10 C -0.21 -3.43 3.86 -105.03 -0.41 -3.83 16 11 C 0.58 11.99 6.87 -12.53 -0.09 11.90 16 12 O -0.53 -13.38 16.52 5.27 0.09 -13.29 16 13 N -0.60 -12.00 2.97 -173.80 -0.52 -12.51 16 14 C 0.11 1.82 6.33 -3.71 -0.02 1.80 16 15 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 16 C -0.11 -2.19 5.10 -26.69 -0.14 -2.33 16 17 C 0.04 1.01 2.26 -91.45 -0.21 0.81 16 18 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.52 -14.10 8.56 -34.44 -0.29 -14.40 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 22 N -0.88 -25.69 11.41 55.43 0.63 -25.06 16 23 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 C 0.11 2.71 5.43 -3.51 -0.02 2.69 16 28 C -0.01 -0.20 6.11 -104.12 -0.64 -0.84 16 29 C -0.10 -1.58 9.63 36.01 0.35 -1.24 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 1.08 7.93 -51.93 -0.41 0.67 16 36 H 0.07 1.04 6.26 -51.93 -0.32 0.71 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 43 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.12 3.44 5.14 -51.93 -0.27 3.18 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.08 1.24 6.42 -51.93 -0.33 0.90 16 47 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 LS Contribution 386.00 15.07 5.82 5.82 Total: -1.00 -33.83 386.00 -8.08 -41.91 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.16 Total: 3.07 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.18 Total: 1.20 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.08 Total: -43.12 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.63 Total: -25.15 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.83 -8.08 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.676 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds