Wall clock time and date at job start Tue Mar 31 2020 20:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34874 * 117.00130 * 2 1 4 4 O 1.21596 * 120.00108 * 0.02562 * 3 2 1 5 5 C 1.46627 * 119.99916 * 180.02562 * 3 2 1 6 6 N 1.37828 * 125.86285 * 359.97438 * 5 3 2 7 7 H 0.97006 * 125.39441 * 0.05339 * 6 5 3 8 8 C 1.34241 * 109.21460 * 180.02562 * 6 5 3 9 9 C 1.50697 * 125.79510 * 180.02562 * 8 6 5 10 10 C 1.38244 * 108.40799 * 0.02562 * 8 6 5 11 11 C 1.47394 * 126.45016 * 179.97438 * 10 8 6 12 12 O 1.21610 * 120.00204 * 90.02694 * 11 10 8 13 13 N 1.34784 * 120.00019 * 270.02190 * 11 10 8 14 14 C 1.46923 * 120.62964 * 359.97438 * 13 11 10 15 15 C 1.53190 * 108.77809 * 233.58685 * 14 13 11 16 16 C 1.53036 * 109.31273 * 305.36826 * 15 14 13 17 17 C 1.53041 * 109.53807 * 61.36337 * 16 15 14 18 18 H 1.08995 * 109.49781 * 58.62126 * 17 16 15 19 19 C 1.50700 * 109.49437 * 178.68398 * 17 16 15 20 20 H 1.07998 * 120.00682 * 0.02562 * 19 17 16 21 21 C 1.37886 * 119.99812 * 179.97438 * 19 17 16 22 22 N 1.31509 * 119.99755 * 0.02562 * 21 19 17 23 23 Si 1.86798 * 119.99944 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47341 * 60.00179 * 23 21 19 25 25 H 1.48501 * 109.46929 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47057 * 300.00156 * 23 21 19 27 27 C 1.46927 * 120.62995 * 179.72134 * 13 11 10 28 28 C 1.36445 * 125.86199 * 180.29407 * 5 3 2 29 29 C 1.50706 * 126.49118 * 359.97438 * 28 5 3 30 30 H 1.08993 * 109.47435 * 59.99802 * 1 2 3 31 31 H 1.09001 * 109.47001 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46820 * 299.99957 * 1 2 3 33 33 H 1.08998 * 109.47245 * 269.96347 * 9 8 6 34 34 H 1.09002 * 109.47239 * 29.96295 * 9 8 6 35 35 H 1.08994 * 109.46883 * 149.96369 * 9 8 6 36 36 H 1.09007 * 109.58781 * 353.37617 * 14 13 11 37 37 H 1.08998 * 109.58580 * 113.65434 * 14 13 11 38 38 H 1.09001 * 109.49704 * 65.32018 * 15 14 13 39 39 H 1.09002 * 109.49744 * 185.41599 * 15 14 13 40 40 H 1.09000 * 109.46265 * 181.38787 * 16 15 14 41 41 H 1.09009 * 109.45909 * 301.35716 * 16 15 14 42 42 H 0.97004 * 120.00112 * 180.02562 * 22 21 19 43 43 H 1.08998 * 109.58645 * 246.19910 * 27 13 11 44 44 H 1.09001 * 109.58579 * 6.63067 * 27 13 11 45 45 H 1.09002 * 109.47323 * 270.12943 * 29 28 5 46 46 H 1.08991 * 109.47377 * 30.13705 * 29 28 5 47 47 H 1.09006 * 109.46346 * 150.13536 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4021 2.2215 0.0005 5 6 3.5286 1.2784 -0.0006 6 7 4.3934 0.2052 -0.0006 7 1 4.1302 -0.7285 -0.0010 8 6 5.6577 0.6565 -0.0006 9 6 6.8987 -0.1983 -0.0013 10 6 5.6278 2.0386 0.0000 11 6 6.7942 2.9397 0.0007 12 8 7.2754 3.3124 -1.0521 13 7 7.3275 3.3509 1.1683 14 6 6.7568 2.9098 2.4484 15 6 6.4459 4.1439 3.3010 16 6 7.7094 4.9967 3.4367 17 6 8.1603 5.4674 2.0520 18 1 7.3601 6.0409 1.5843 19 6 9.3857 6.3336 2.1897 20 1 9.8021 6.5289 3.1668 21 6 9.9761 6.8761 1.0679 22 7 9.4694 6.6379 -0.1221 23 14 11.4955 7.9492 1.2384 24 1 12.5855 7.1666 1.8745 25 1 11.9324 8.4057 -0.1055 26 1 11.1761 9.1290 2.0818 27 6 8.4938 4.2442 1.1852 28 6 4.2690 2.4245 0.0050 29 6 3.7377 3.8347 0.0124 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 7.1985 -0.4044 1.0262 34 1 6.6928 -1.1374 -0.5149 35 1 7.7024 0.3285 -0.5155 36 1 5.8389 2.3509 2.2660 37 1 7.4739 2.2748 2.9686 38 1 5.6616 4.7293 2.8213 39 1 6.1121 3.8284 4.2895 40 1 7.4973 5.8629 4.0634 41 1 8.5010 4.4029 3.8938 42 1 9.8849 7.0191 -0.9114 43 1 9.3509 3.7181 1.6055 44 1 8.7222 4.5661 0.1692 45 1 3.6071 4.1792 -1.0135 46 1 2.7781 3.8588 0.5287 47 1 4.4438 4.4863 0.5273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:13 Heat of formation + Delta-G solvation = -110.211863 kcal Electronic energy + Delta-G solvation = -29937.631917 eV Core-core repulsion = 25891.824949 eV Total energy + Delta-G solvation = -4045.806968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -42.91157 -41.14412 -40.41896 -38.19567 -37.58666 -35.25836 -34.13806 -33.48664 -32.68308 -31.45655 -29.37650 -29.08119 -27.34318 -26.98086 -26.27999 -23.69282 -23.36699 -22.66037 -21.01174 -20.65483 -19.79004 -19.20275 -18.32033 -17.92847 -17.65499 -17.41101 -16.77971 -16.59571 -16.41491 -15.78850 -15.58746 -15.16178 -14.89298 -14.59436 -14.54803 -14.47312 -14.34578 -14.16282 -14.03128 -13.87449 -13.62724 -13.43534 -13.26793 -13.21737 -13.03448 -12.83156 -12.69811 -12.63826 -12.25977 -12.23006 -11.85136 -11.81115 -11.65746 -11.59902 -11.14978 -10.92332 -10.73248 -10.48965 -9.90143 -9.36466 -9.30735 -8.07373 -6.24666 0.04994 1.12203 1.42676 1.43917 1.45518 1.52561 1.75347 1.87580 1.93689 2.39504 2.47570 3.20685 3.66348 3.71578 3.75723 4.00322 4.11342 4.20000 4.21269 4.31391 4.35370 4.40487 4.43619 4.63101 4.63807 4.65343 4.69735 4.73179 4.78010 4.84496 4.87975 4.93890 5.01929 5.08493 5.12222 5.22472 5.28269 5.30332 5.39040 5.43044 5.58925 5.62856 5.69330 5.94080 6.03313 6.35085 6.36340 6.61609 6.71833 6.88162 7.37582 7.45660 8.95898 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.003043 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.633610 B = 9198.012782 C = 9432.537039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.359 6.359 3 C 0.543 3.457 4 O -0.521 6.521 5 C -0.053 4.053 6 N -0.492 5.492 7 H 0.445 0.555 8 C 0.135 3.865 9 C -0.096 4.096 10 C -0.245 4.245 11 C 0.582 3.418 12 O -0.593 6.593 13 N -0.597 5.597 14 C 0.112 3.888 15 C -0.127 4.127 16 C -0.103 4.103 17 C 0.040 3.960 18 H -0.017 1.017 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.010 3.990 22 N -0.915 5.915 23 Si 0.957 3.043 24 H -0.265 1.265 25 H -0.290 1.290 26 H -0.270 1.270 27 C 0.126 3.874 28 C -0.037 4.037 29 C -0.092 4.092 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.101 0.899 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.259 0.741 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.865 -21.359 4.919 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.276 6.276 3 C 0.389 3.611 4 O -0.411 6.411 5 C -0.162 4.162 6 N -0.089 5.089 7 H 0.288 0.712 8 C 0.011 3.989 9 C -0.153 4.153 10 C -0.253 4.253 11 C 0.370 3.630 12 O -0.474 6.474 13 N -0.327 5.327 14 C -0.010 4.010 15 C -0.165 4.165 16 C -0.141 4.141 17 C 0.020 3.980 18 H 0.001 0.999 19 C -0.574 4.574 20 H 0.081 0.919 21 C -0.190 4.190 22 N -0.554 5.554 23 Si 0.782 3.218 24 H -0.190 1.190 25 H -0.216 1.216 26 H -0.195 1.195 27 C 0.004 3.996 28 C -0.045 4.045 29 C -0.149 4.149 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.959 -21.004 4.213 26.128 hybrid contribution 0.611 1.092 -0.547 1.365 sum -14.348 -19.912 3.666 24.815 Atomic orbital electron populations 1.23611 0.73709 1.06046 1.02786 1.86524 1.25708 1.31023 1.84350 1.19664 0.86530 0.82130 0.72750 1.90879 1.65765 1.36696 1.47770 1.18352 0.86887 0.87389 1.23611 1.41313 1.03713 1.09323 1.54544 0.71199 1.20974 0.87188 0.91793 0.98986 1.20696 0.90287 0.98865 1.05484 1.19149 0.92326 0.93464 1.20406 1.17938 0.82246 0.79685 0.83101 1.90761 1.64172 1.59277 1.33166 1.48453 1.31165 1.46944 1.06181 1.21847 0.99415 0.96708 0.83051 1.21909 0.97488 0.96415 1.00675 1.21507 0.96878 0.98678 0.97020 1.18954 0.94661 0.92005 0.92350 0.99879 1.21489 1.12485 1.30312 0.93114 0.91897 1.25899 1.00363 0.97652 0.95053 1.70097 1.41578 1.45251 0.98462 0.85627 0.79880 0.79312 0.76945 1.18978 1.21608 1.19479 1.21803 0.84849 0.89555 1.03382 1.19640 0.90807 0.94898 0.99186 1.20358 1.01462 0.90765 1.02284 0.91968 0.84429 0.91662 0.87309 0.87036 0.91519 0.88907 0.89683 0.93673 0.88059 0.93113 0.92029 0.93184 0.93887 0.90635 0.91683 0.89161 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.54 16 2 O -0.36 -6.10 10.58 -57.88 -0.61 -6.71 16 3 C 0.54 12.91 7.93 70.01 0.56 13.46 16 4 O -0.52 -15.17 14.49 19.52 0.28 -14.89 16 5 C -0.05 -1.32 7.02 39.97 0.28 -1.04 16 6 N -0.49 -8.71 6.01 -171.73 -1.03 -9.74 16 7 H 0.44 4.16 8.96 -92.70 -0.83 3.33 16 8 C 0.14 3.05 7.20 42.19 0.30 3.35 16 9 C -0.10 -1.53 10.24 71.23 0.73 -0.80 16 10 C -0.24 -8.03 3.86 -20.13 -0.08 -8.11 16 11 C 0.58 25.13 6.87 86.65 0.60 25.73 16 12 O -0.59 -32.17 16.52 -4.06 -0.07 -32.23 16 13 N -0.60 -24.69 2.97 -822.04 -2.44 -27.13 16 14 C 0.11 3.41 6.33 86.36 0.55 3.95 16 15 C -0.13 -4.00 6.08 30.67 0.19 -3.82 16 16 C -0.10 -4.06 5.10 30.62 0.16 -3.90 16 17 C 0.04 2.03 2.26 -11.33 -0.03 2.01 16 18 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 19 C -0.54 -29.81 8.56 25.60 0.22 -29.59 16 20 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 21 C 0.01 0.55 5.30 84.66 0.45 1.00 16 22 N -0.92 -56.72 11.41 21.45 0.24 -56.47 16 23 Si 0.96 44.75 29.54 68.60 2.03 46.77 16 24 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 27 C 0.13 6.38 5.43 86.49 0.47 6.85 16 28 C -0.04 -1.17 6.11 -19.54 -0.12 -1.29 16 29 C -0.09 -3.09 9.63 71.24 0.69 -2.40 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 35 H 0.07 1.48 7.93 -2.39 -0.02 1.46 16 36 H 0.09 2.49 6.26 -2.38 -0.01 2.47 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 42 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.08 4.59 5.14 -2.39 -0.01 4.58 16 45 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.09 2.81 6.42 -2.39 -0.02 2.79 16 47 H 0.05 1.86 8.05 -2.38 -0.02 1.84 16 Total: -1.00 -81.34 386.00 4.72 -76.62 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.16 Total: 16.85 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 6.15 Total: 6.94 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -3.23 Total: -93.35 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.40 Total: -53.83 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -81.34 4.72 -76.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.594 kcal (2) G-P(sol) polarization free energy of solvation -81.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds