Wall clock time and date at job start Tue Mar 31 2020 20:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34769 * 116.99777 * 2 1 4 4 O 1.21530 * 120.00134 * 359.97438 * 3 2 1 5 5 C 1.47250 * 119.99505 * 179.97438 * 3 2 1 6 6 C 1.38281 * 126.47418 * 90.26018 * 5 3 2 7 7 C 1.50705 * 125.80785 * 359.97438 * 6 5 3 8 8 N 1.34221 * 108.38788 * 180.13588 * 6 5 3 9 9 H 0.97008 * 125.38228 * 179.89230 * 8 6 5 10 10 C 1.37786 * 109.23723 * 359.63423 * 8 6 5 11 11 C 1.46817 * 125.84339 * 180.20323 * 10 8 6 12 12 O 1.21686 * 119.99778 * 71.77070 * 11 10 8 13 13 N 1.34770 * 120.00437 * 251.77035 * 11 10 8 14 14 C 1.46930 * 120.62975 * 5.40570 * 13 11 10 15 15 C 1.53621 * 108.53938 * 126.36919 * 14 13 11 16 16 C 1.53032 * 109.24292 * 54.86227 * 15 14 13 17 17 C 1.53046 * 109.53779 * 298.50578 * 16 15 14 18 18 H 1.08999 * 109.49427 * 301.41423 * 17 16 15 19 19 C 1.50696 * 109.49819 * 181.31637 * 17 16 15 20 20 H 1.08006 * 120.00256 * 0.16467 * 19 17 16 21 21 C 1.37875 * 119.99907 * 180.16179 * 19 17 16 22 22 N 1.31509 * 120.00277 * 0.02562 * 21 19 17 23 23 Si 1.86804 * 120.00022 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47303 * 59.99922 * 23 21 19 25 25 H 1.48496 * 109.47251 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47061 * 300.00218 * 23 21 19 27 27 C 1.46930 * 120.63341 * 185.69272 * 13 11 10 28 28 C 1.36329 * 108.31697 * 0.22735 * 10 8 6 29 29 C 1.50708 * 126.49615 * 180.02562 * 28 10 8 30 30 H 1.08996 * 109.47507 * 300.00313 * 1 2 3 31 31 H 1.09005 * 109.46818 * 60.00628 * 1 2 3 32 32 H 1.08996 * 109.46742 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47263 * 270.18887 * 7 6 5 34 34 H 1.08996 * 109.46773 * 30.19464 * 7 6 5 35 35 H 1.09004 * 109.46973 * 150.18962 * 7 6 5 36 36 H 1.08992 * 109.59185 * 246.20622 * 14 13 11 37 37 H 1.09004 * 109.58273 * 6.63003 * 14 13 11 38 38 H 1.09002 * 109.64013 * 294.86487 * 15 14 13 39 39 H 1.09007 * 109.45871 * 174.74489 * 15 14 13 40 40 H 1.09008 * 109.46171 * 178.49163 * 16 15 14 41 41 H 1.08998 * 109.45353 * 58.52192 * 16 15 14 42 42 H 0.97006 * 120.00477 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.58470 * 353.36552 * 27 13 11 44 44 H 1.08999 * 109.58863 * 113.79816 * 27 13 11 45 45 H 1.09000 * 109.47158 * 89.99543 * 29 28 10 46 46 H 1.09006 * 109.46748 * 209.99630 * 29 28 10 47 47 H 1.08997 * 109.46867 * 329.99797 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5343 1.2778 0.0006 6 6 4.3554 1.3256 -1.1111 7 6 3.8976 1.3073 -2.5468 8 7 5.6296 1.3875 -0.6939 9 1 6.4082 1.4286 -1.2710 10 6 5.6567 1.3893 0.6837 11 6 6.8619 1.4522 1.5198 12 8 7.4968 2.4876 1.5950 13 7 7.2651 0.3634 2.2040 14 6 6.5796 -0.9249 2.0323 15 6 7.6259 -1.9909 1.6734 16 6 8.7228 -2.0004 2.7404 17 6 9.4169 -0.6368 2.7732 18 1 9.8389 -0.4198 1.7919 19 6 10.5181 -0.6574 3.8017 20 1 10.7065 -1.5543 4.3732 21 6 11.2851 0.4686 4.0131 22 7 11.0555 1.5608 3.3175 23 14 12.6507 0.4428 5.2875 24 1 13.6413 -0.6043 4.9304 25 1 13.3206 1.7676 5.3221 26 1 12.0752 0.1446 6.6236 27 6 8.3945 0.4433 3.1405 28 6 4.3729 1.3221 1.1376 29 6 3.9316 1.2999 2.5784 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.8381 0.2765 -2.8961 34 1 2.9151 1.7734 -2.6208 35 1 4.6086 1.8589 -3.1619 36 1 6.0785 -1.1988 2.9607 37 1 5.8471 -0.8447 1.2291 38 1 8.0648 -1.7611 0.7024 39 1 7.1481 -2.9699 1.6341 40 1 9.4533 -2.7740 2.5034 41 1 8.2796 -2.2058 3.7148 42 1 11.5949 2.3532 3.4665 43 1 8.8598 1.4264 3.0686 44 1 8.0383 0.2787 4.1574 45 1 3.7713 2.3208 2.9251 46 1 3.0024 0.7365 2.6651 47 1 4.7019 0.8262 3.1870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597917083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:51 Heat of formation + Delta-G solvation = -87.484941 kcal Electronic energy + Delta-G solvation = -29773.949383 eV Core-core repulsion = 25729.127929 eV Total energy + Delta-G solvation = -4044.821455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -41.78992 -40.10633 -39.01532 -36.66282 -36.42182 -33.64239 -33.03240 -31.95076 -31.65205 -29.82640 -28.70940 -27.52290 -26.81940 -25.07259 -24.37773 -23.23707 -21.87179 -20.90004 -19.97287 -19.43491 -18.63206 -17.47493 -17.27173 -16.60953 -16.32169 -16.12154 -15.89065 -15.12533 -14.77306 -14.50373 -14.33908 -13.74030 -13.71461 -13.58734 -13.27693 -13.20369 -13.16755 -12.93404 -12.74210 -12.62836 -12.43897 -12.36456 -12.29915 -12.07543 -11.87883 -11.53232 -11.02108 -10.93880 -10.93855 -10.74030 -10.55746 -10.43375 -10.27308 -9.93289 -9.55214 -9.16766 -8.99743 -8.93601 -8.47154 -8.07158 -7.83102 -6.03040 -4.12149 1.74705 2.03410 2.15087 2.57272 2.90200 3.30051 3.36425 3.37372 3.39708 3.79491 4.40318 4.51554 4.74143 4.86018 4.89490 4.90496 4.97391 5.16156 5.22166 5.26635 5.26887 5.33960 5.37795 5.47574 5.56583 5.66966 5.73999 5.75793 5.97802 5.98705 6.04444 6.15490 6.25470 6.27956 6.54484 6.57958 6.62958 6.73975 6.81027 6.92819 7.07126 7.19069 7.25013 7.58501 7.65958 7.81637 7.94008 8.14285 8.33878 8.69773 8.91813 9.53824 11.02129 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021538 B = 0.002917 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.710701 B = 9596.829146 C = 9836.303483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.351 6.351 3 C 0.552 3.448 4 O -0.502 6.502 5 C -0.207 4.207 6 C 0.088 3.912 7 C -0.093 4.093 8 N -0.510 5.510 9 H 0.425 0.575 10 C -0.013 4.013 11 C 0.573 3.427 12 O -0.523 6.523 13 N -0.589 5.589 14 C 0.108 3.892 15 C -0.132 4.132 16 C -0.111 4.111 17 C 0.042 3.958 18 H 0.028 0.972 19 C -0.522 4.522 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.111 3.889 28 C -0.076 4.076 29 C -0.092 4.092 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.265 0.735 43 H 0.124 0.876 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.419 -5.523 -9.698 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.268 6.268 3 C 0.395 3.605 4 O -0.389 6.389 5 C -0.215 4.215 6 C -0.033 4.033 7 C -0.150 4.150 8 N -0.104 5.104 9 H 0.264 0.736 10 C -0.127 4.127 11 C 0.357 3.643 12 O -0.399 6.399 13 N -0.321 5.321 14 C -0.015 4.015 15 C -0.170 4.170 16 C -0.149 4.149 17 C 0.023 3.977 18 H 0.046 0.954 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.140 4.140 22 N -0.518 5.518 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.008 4.008 28 C -0.082 4.082 29 C -0.149 4.149 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.142 0.858 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.061 -4.469 -9.716 20.990 hybrid contribution 0.848 0.082 0.396 0.940 sum -17.213 -4.387 -9.320 20.060 Atomic orbital electron populations 1.23279 0.76654 1.03645 1.02509 1.86707 1.22961 1.33105 1.84006 1.20354 0.87892 0.81116 0.71156 1.90845 1.66828 1.36276 1.44923 1.18061 0.88820 1.21053 0.93582 1.20353 0.82990 1.04591 0.95320 1.20483 1.02476 1.03536 0.88543 1.41400 1.07542 1.55187 1.06295 0.73602 1.19915 0.95408 1.14801 0.82574 1.17125 0.82301 0.84420 0.80425 1.90884 1.54578 1.30053 1.64386 1.48469 1.33184 1.07650 1.42776 1.21780 0.94700 0.83879 1.01184 1.22009 0.97415 0.97262 1.00315 1.21640 0.96161 1.00411 0.96680 1.18950 0.92268 0.88722 0.97777 0.95371 1.21035 1.15363 0.98207 1.21444 0.92347 1.25053 0.97287 0.95621 0.96033 1.69866 1.39723 1.02281 1.39929 0.86647 0.82167 0.77164 0.81971 1.20286 1.21258 1.20207 1.22408 0.83582 1.06412 0.88447 1.19310 0.89641 1.04429 0.94853 1.20323 1.01534 1.02611 0.90413 0.91884 0.91982 0.88090 0.89819 0.89961 0.90571 0.91742 0.90746 0.92366 0.92116 0.92980 0.93043 0.92542 0.85811 0.93537 0.90968 0.91626 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.57 101.05 1.07 1.32 16 2 O -0.35 -4.01 10.58 -40.68 -0.43 -4.44 16 3 C 0.55 7.48 7.14 34.39 0.25 7.72 16 4 O -0.50 -7.88 16.90 -19.29 -0.33 -8.20 16 5 C -0.21 -2.88 6.01 -105.03 -0.63 -3.52 16 6 C 0.09 1.05 7.21 -81.53 -0.59 0.46 16 7 C -0.09 -0.73 10.24 36.01 0.37 -0.37 16 8 N -0.51 -6.60 6.01 -5.61 -0.03 -6.64 16 9 H 0.43 4.59 8.96 -40.82 -0.37 4.22 16 10 C -0.01 -0.22 5.03 -82.41 -0.41 -0.63 16 11 C 0.57 11.45 7.10 -12.79 -0.09 11.36 16 12 O -0.52 -12.82 16.53 5.20 0.09 -12.73 16 13 N -0.59 -11.43 2.97 -173.99 -0.52 -11.94 16 14 C 0.11 1.68 5.90 -3.49 -0.02 1.66 16 15 C -0.13 -2.06 6.10 -26.39 -0.16 -2.22 16 16 C -0.11 -2.13 5.10 -26.69 -0.14 -2.27 16 17 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 18 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.52 -13.79 8.56 -34.44 -0.29 -14.08 16 20 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.88 -25.23 11.39 55.43 0.63 -24.60 16 23 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.11 2.60 5.41 -3.71 -0.02 2.58 16 28 C -0.08 -1.15 5.69 -104.12 -0.59 -1.74 16 29 C -0.09 -1.25 10.01 36.01 0.36 -0.89 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.66 7.93 -51.93 -0.41 0.25 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.05 6.07 -51.93 -0.32 0.73 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 40 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.12 3.41 5.11 -51.93 -0.27 3.14 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 47 H 0.07 1.02 7.53 -51.93 -0.39 0.63 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -33.40 388.39 -8.17 -41.57 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.20 Total: 3.40 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.21 Total: 1.80 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.08 Total: -43.18 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.67 Total: -25.37 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.40 -8.17 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597917083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.917 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds