Wall clock time and date at job start Tue Mar 31 2020 20:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34769 * 116.99777 * 2 1 4 4 O 1.21530 * 120.00134 * 359.97438 * 3 2 1 5 5 C 1.47250 * 119.99505 * 179.97438 * 3 2 1 6 6 C 1.38281 * 126.47418 * 90.26018 * 5 3 2 7 7 C 1.50705 * 125.80785 * 359.97438 * 6 5 3 8 8 N 1.34221 * 108.38788 * 180.13588 * 6 5 3 9 9 H 0.97008 * 125.38228 * 179.89230 * 8 6 5 10 10 C 1.37786 * 109.23723 * 359.63423 * 8 6 5 11 11 C 1.46817 * 125.84339 * 180.20323 * 10 8 6 12 12 O 1.21686 * 119.99778 * 71.77070 * 11 10 8 13 13 N 1.34770 * 120.00437 * 251.77035 * 11 10 8 14 14 C 1.46930 * 120.62975 * 5.40570 * 13 11 10 15 15 C 1.53621 * 108.53938 * 126.36919 * 14 13 11 16 16 C 1.53032 * 109.24292 * 54.86227 * 15 14 13 17 17 C 1.53046 * 109.53779 * 298.50578 * 16 15 14 18 18 H 1.08999 * 109.49427 * 301.41423 * 17 16 15 19 19 C 1.50696 * 109.49819 * 181.31637 * 17 16 15 20 20 H 1.08006 * 120.00256 * 0.16467 * 19 17 16 21 21 C 1.37875 * 119.99907 * 180.16179 * 19 17 16 22 22 N 1.31509 * 120.00277 * 0.02562 * 21 19 17 23 23 Si 1.86804 * 120.00022 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47303 * 59.99922 * 23 21 19 25 25 H 1.48496 * 109.47251 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47061 * 300.00218 * 23 21 19 27 27 C 1.46930 * 120.63341 * 185.69272 * 13 11 10 28 28 C 1.36329 * 108.31697 * 0.22735 * 10 8 6 29 29 C 1.50708 * 126.49615 * 180.02562 * 28 10 8 30 30 H 1.08996 * 109.47507 * 300.00313 * 1 2 3 31 31 H 1.09005 * 109.46818 * 60.00628 * 1 2 3 32 32 H 1.08996 * 109.46742 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47263 * 270.18887 * 7 6 5 34 34 H 1.08996 * 109.46773 * 30.19464 * 7 6 5 35 35 H 1.09004 * 109.46973 * 150.18962 * 7 6 5 36 36 H 1.08992 * 109.59185 * 246.20622 * 14 13 11 37 37 H 1.09004 * 109.58273 * 6.63003 * 14 13 11 38 38 H 1.09002 * 109.64013 * 294.86487 * 15 14 13 39 39 H 1.09007 * 109.45871 * 174.74489 * 15 14 13 40 40 H 1.09008 * 109.46171 * 178.49163 * 16 15 14 41 41 H 1.08998 * 109.45353 * 58.52192 * 16 15 14 42 42 H 0.97006 * 120.00477 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.58470 * 353.36552 * 27 13 11 44 44 H 1.08999 * 109.58863 * 113.79816 * 27 13 11 45 45 H 1.09000 * 109.47158 * 89.99543 * 29 28 10 46 46 H 1.09006 * 109.46748 * 209.99630 * 29 28 10 47 47 H 1.08997 * 109.46867 * 329.99797 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2201 -0.0005 5 6 3.5343 1.2778 0.0006 6 6 4.3554 1.3256 -1.1111 7 6 3.8976 1.3073 -2.5468 8 7 5.6296 1.3875 -0.6939 9 1 6.4082 1.4286 -1.2710 10 6 5.6567 1.3893 0.6837 11 6 6.8619 1.4522 1.5198 12 8 7.4968 2.4876 1.5950 13 7 7.2651 0.3634 2.2040 14 6 6.5796 -0.9249 2.0323 15 6 7.6259 -1.9909 1.6734 16 6 8.7228 -2.0004 2.7404 17 6 9.4169 -0.6368 2.7732 18 1 9.8389 -0.4198 1.7919 19 6 10.5181 -0.6574 3.8017 20 1 10.7065 -1.5543 4.3732 21 6 11.2851 0.4686 4.0131 22 7 11.0555 1.5608 3.3175 23 14 12.6507 0.4428 5.2875 24 1 13.6413 -0.6043 4.9304 25 1 13.3206 1.7676 5.3221 26 1 12.0752 0.1446 6.6236 27 6 8.3945 0.4433 3.1405 28 6 4.3729 1.3221 1.1376 29 6 3.9316 1.2999 2.5784 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.8381 0.2765 -2.8961 34 1 2.9151 1.7734 -2.6208 35 1 4.6086 1.8589 -3.1619 36 1 6.0785 -1.1988 2.9607 37 1 5.8471 -0.8447 1.2291 38 1 8.0648 -1.7611 0.7024 39 1 7.1481 -2.9699 1.6341 40 1 9.4533 -2.7740 2.5034 41 1 8.2796 -2.2058 3.7148 42 1 11.5949 2.3532 3.4665 43 1 8.8598 1.4264 3.0686 44 1 8.0383 0.2787 4.1574 45 1 3.7713 2.3208 2.9251 46 1 3.0024 0.7365 2.6651 47 1 4.7019 0.8262 3.1870 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597917083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:48 Heat of formation + Delta-G solvation = -108.253633 kcal Electronic energy + Delta-G solvation = -29774.849981 eV Core-core repulsion = 25729.127929 eV Total energy + Delta-G solvation = -4045.722053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.89584 -41.15443 -40.48523 -38.31559 -37.38012 -35.37463 -34.30464 -33.44569 -32.74751 -31.53720 -29.56015 -28.31304 -28.15961 -26.90882 -25.75872 -24.29747 -23.47652 -22.22681 -21.04363 -20.78075 -19.96142 -18.82170 -18.40128 -18.16013 -17.69610 -17.30761 -17.05073 -16.54974 -16.35326 -15.84890 -15.68456 -15.20377 -14.95110 -14.63657 -14.48380 -14.42409 -14.24676 -14.20119 -14.09475 -13.84285 -13.72572 -13.49133 -13.27607 -13.21382 -12.95797 -12.85285 -12.72717 -12.54995 -12.28745 -12.26535 -11.85286 -11.77842 -11.74639 -11.63254 -11.26036 -10.96848 -10.83364 -10.51924 -10.01006 -9.50415 -9.16609 -8.10783 -6.27650 0.67807 1.02108 1.06139 1.31402 1.42117 1.43352 1.51203 1.90410 2.01069 2.41095 2.49847 3.17739 3.53275 3.67130 3.87674 3.97425 4.05241 4.14969 4.20937 4.33851 4.38147 4.38786 4.41344 4.59450 4.65097 4.67926 4.69826 4.73165 4.77818 4.80466 4.84222 4.90742 5.00091 5.03654 5.09544 5.23581 5.25893 5.31755 5.35343 5.49436 5.53034 5.61320 5.65500 5.89103 5.98344 6.26744 6.32415 6.52447 6.70873 6.84721 7.13266 7.42720 8.92274 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021538 B = 0.002917 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.710701 B = 9596.829146 C = 9836.303483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.352 6.352 3 C 0.561 3.439 4 O -0.530 6.530 5 C -0.234 4.234 6 C 0.117 3.883 7 C -0.094 4.094 8 N -0.505 5.505 9 H 0.434 0.566 10 C -0.043 4.043 11 C 0.575 3.425 12 O -0.583 6.583 13 N -0.587 5.587 14 C 0.107 3.893 15 C -0.123 4.123 16 C -0.105 4.105 17 C 0.041 3.959 18 H -0.012 1.012 19 C -0.535 4.535 20 H 0.063 0.937 21 C 0.011 3.989 22 N -0.915 5.915 23 Si 0.956 3.044 24 H -0.268 1.268 25 H -0.291 1.291 26 H -0.267 1.267 27 C 0.124 3.876 28 C -0.070 4.070 29 C -0.093 4.093 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.103 0.897 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.259 0.741 43 H 0.078 0.922 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.578 -8.023 -10.692 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.267 6.267 3 C 0.405 3.595 4 O -0.420 6.420 5 C -0.242 4.242 6 C -0.005 4.005 7 C -0.151 4.151 8 N -0.100 5.100 9 H 0.274 0.726 10 C -0.156 4.156 11 C 0.361 3.639 12 O -0.463 6.463 13 N -0.318 5.318 14 C -0.015 4.015 15 C -0.161 4.161 16 C -0.143 4.143 17 C 0.022 3.978 18 H 0.006 0.994 19 C -0.573 4.573 20 H 0.082 0.918 21 C -0.189 4.189 22 N -0.554 5.554 23 Si 0.781 3.219 24 H -0.193 1.193 25 H -0.217 1.217 26 H -0.192 1.192 27 C 0.002 3.998 28 C -0.077 4.077 29 C -0.150 4.150 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.069 0.931 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.239 -7.045 -10.712 23.958 hybrid contribution 1.427 0.813 0.644 1.764 sum -18.812 -6.231 -10.068 22.228 Atomic orbital electron populations 1.23632 0.74528 1.05921 1.02758 1.86687 1.25002 1.31728 1.83331 1.20205 0.87593 0.81294 0.70434 1.90834 1.67349 1.37317 1.46460 1.18225 0.89439 1.22776 0.93757 1.21020 0.81933 1.00700 0.96858 1.20699 1.02913 1.05548 0.85900 1.41400 1.08508 1.54882 1.05203 0.72577 1.19237 0.93802 1.18842 0.83709 1.17593 0.82733 0.83414 0.80119 1.90842 1.56926 1.32210 1.66321 1.48428 1.32239 1.09377 1.41744 1.22061 0.94817 0.81613 1.03002 1.21969 0.96306 0.99429 0.98422 1.21526 0.97089 0.97080 0.98579 1.18881 0.92306 0.91784 0.94848 0.99416 1.21487 1.16029 0.98166 1.21668 0.91846 1.25873 0.99719 0.95310 0.97959 1.70069 1.40742 1.02804 1.41750 0.85644 0.79432 0.76989 0.79819 1.19335 1.21659 1.19187 1.21843 0.84840 1.03858 0.89225 1.19494 0.89364 1.03111 0.95760 1.20363 1.02249 1.02564 0.89800 0.92068 0.91412 0.84810 0.87277 0.89715 0.88531 0.89850 0.88582 0.93100 0.87820 0.92778 0.92193 0.93153 0.90328 0.93808 0.91531 0.89660 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.57 113.37 1.20 1.51 16 2 O -0.35 -7.04 10.58 -56.80 -0.60 -7.64 16 3 C 0.56 14.06 7.14 70.19 0.50 14.57 16 4 O -0.53 -15.93 16.90 19.74 0.33 -15.60 16 5 C -0.23 -6.10 6.01 -20.13 -0.12 -6.22 16 6 C 0.12 2.51 7.21 42.21 0.30 2.81 16 7 C -0.09 -1.14 10.24 71.24 0.73 -0.41 16 8 N -0.50 -12.45 6.01 -171.65 -1.03 -13.48 16 9 H 0.43 8.94 8.96 -92.70 -0.83 8.11 16 10 C -0.04 -1.39 5.03 40.01 0.20 -1.19 16 11 C 0.57 23.85 7.10 86.49 0.61 24.46 16 12 O -0.58 -30.52 16.53 -4.30 -0.07 -30.59 16 13 N -0.59 -23.28 2.97 -822.61 -2.44 -25.72 16 14 C 0.11 3.11 5.90 86.51 0.51 3.62 16 15 C -0.12 -3.56 6.10 30.81 0.19 -3.37 16 16 C -0.11 -3.91 5.10 30.62 0.16 -3.76 16 17 C 0.04 2.02 2.25 -11.46 -0.03 1.99 16 18 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 19 C -0.54 -28.90 8.56 25.60 0.22 -28.68 16 20 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 21 C 0.01 0.61 5.30 84.66 0.45 1.05 16 22 N -0.92 -55.17 11.39 21.45 0.24 -54.92 16 23 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 27 C 0.12 6.07 5.41 86.36 0.47 6.54 16 28 C -0.07 -2.06 5.69 -19.54 -0.11 -2.17 16 29 C -0.09 -2.46 10.01 71.24 0.71 -1.75 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.08 7.93 -2.39 -0.02 1.06 16 35 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.10 2.45 6.07 -2.39 -0.01 2.44 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 43 H 0.08 4.64 5.11 -2.39 -0.01 4.62 16 44 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.08 1.88 8.05 -2.38 -0.02 1.86 16 47 H 0.07 1.87 7.53 -2.39 -0.02 1.85 16 Total: -1.00 -77.84 388.39 4.61 -73.23 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.16 Total: 19.87 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 5.99 Total: 9.01 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -3.23 Total: -94.13 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.34 Total: -53.83 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -77.84 4.61 -73.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597917083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.027 kcal (2) G-P(sol) polarization free energy of solvation -77.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds