Wall clock time and date at job start Tue Mar 31 2020 20:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21320 * 120.00244 * 2 1 4 4 C 1.46663 * 120.00011 * 179.97438 * 2 1 3 5 5 C 1.38731 * 126.45220 * 274.70606 * 4 2 1 6 6 C 1.50707 * 125.67566 * 359.96555 * 5 4 2 7 7 N 1.33988 * 108.64471 * 180.22564 * 5 4 2 8 8 H 0.96996 * 125.33521 * 179.70086 * 7 5 4 9 9 C 1.38055 * 109.33540 * 359.57354 * 7 5 4 10 10 C 1.41591 * 125.93773 * 180.17306 * 9 7 5 11 11 O 1.21413 * 119.99458 * 180.29847 * 10 9 7 12 12 C 1.50695 * 120.00253 * 0.30016 * 10 9 7 13 13 N 1.46904 * 109.46981 * 180.02562 * 12 10 9 14 14 C 1.48531 * 111.00399 * 52.60294 * 13 12 10 15 15 C 1.54930 * 103.22773 * 159.72014 * 14 13 12 16 16 C 1.54593 * 102.92332 * 322.58293 * 15 14 13 17 17 O 1.42890 * 110.39499 * 262.99779 * 16 15 14 18 18 C 1.50701 * 110.30837 * 140.87117 * 16 15 14 19 19 H 1.08000 * 120.00570 * 244.28765 * 18 16 15 20 20 C 1.37882 * 119.99813 * 64.28943 * 18 16 15 21 21 N 1.31515 * 120.00147 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99899 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47176 * 89.99890 * 22 20 18 24 24 H 1.48495 * 109.46822 * 209.99657 * 22 20 18 25 25 H 1.48500 * 109.47072 * 329.99404 * 22 20 18 26 26 C 1.47909 * 110.99677 * 170.00007 * 13 12 10 27 27 C 1.37722 * 108.11644 * 0.42595 * 9 7 5 28 28 C 1.50707 * 126.59427 * 179.74546 * 27 9 7 29 29 H 1.09000 * 109.46864 * 245.01480 * 1 2 3 30 30 H 1.09000 * 109.46780 * 5.01830 * 1 2 3 31 31 H 1.08999 * 109.46740 * 125.01333 * 1 2 3 32 32 H 1.09002 * 109.47132 * 84.76534 * 6 5 4 33 33 H 1.08996 * 109.46987 * 324.75970 * 6 5 4 34 34 H 1.09001 * 109.46418 * 204.76243 * 6 5 4 35 35 H 1.09003 * 109.46949 * 299.99738 * 12 10 9 36 36 H 1.08996 * 109.47433 * 59.99644 * 12 10 9 37 37 H 1.09004 * 110.66040 * 278.15522 * 14 13 12 38 38 H 1.09001 * 110.66356 * 41.28105 * 14 13 12 39 39 H 1.09001 * 110.72487 * 204.22578 * 15 14 13 40 40 H 1.09005 * 110.87697 * 81.01208 * 15 14 13 41 41 H 0.96702 * 114.00160 * 295.76821 * 17 16 15 42 42 H 0.96999 * 120.00257 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.91441 * 333.50319 * 26 13 12 44 44 H 1.09000 * 109.91926 * 94.60317 * 26 13 12 45 45 H 1.09003 * 109.47098 * 269.99982 * 28 27 9 46 46 H 1.08999 * 109.47397 * 30.00004 * 28 27 9 47 47 H 1.09001 * 109.46706 * 150.00191 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2701 0.0006 5 6 2.5732 -2.0293 1.1130 6 6 2.2406 -1.6865 2.5425 7 7 3.2444 -3.1149 0.7056 8 1 3.5957 -3.8080 1.2861 9 6 3.3554 -3.0940 -0.6704 10 6 3.9956 -4.0736 -1.4674 11 8 4.0346 -3.9438 -2.6740 12 6 4.6285 -5.2773 -0.8183 13 7 5.2219 -6.1359 -1.8521 14 6 6.1330 -5.3589 -2.7309 15 6 7.0292 -6.4512 -3.3666 16 6 7.2319 -7.4512 -2.2053 17 8 8.4736 -7.2012 -1.5439 18 6 7.1906 -8.8667 -2.7208 19 1 6.4039 -9.5347 -2.4025 20 6 8.1574 -9.3092 -3.5988 21 7 9.1152 -8.4957 -3.9868 22 14 8.1058 -11.0635 -4.2383 23 1 7.3029 -11.1120 -5.4865 24 1 9.4876 -11.5284 -4.5202 25 1 7.4859 -11.9449 -3.2164 26 6 6.0545 -7.1974 -1.2457 27 6 2.7402 -1.9517 -1.1323 28 6 2.6227 -1.5129 -2.5693 29 1 -0.3633 -0.4341 0.9315 30 1 -0.3633 1.0237 -0.0899 31 1 -0.3633 -0.5896 -0.8417 32 1 1.2344 -2.0351 2.7750 33 1 2.2916 -0.6063 2.6783 34 1 2.9556 -2.1706 3.2078 35 1 5.4059 -4.9509 -0.1274 36 1 3.8691 -5.8371 -0.2724 37 1 5.5683 -4.8297 -3.4985 38 1 6.7325 -4.6629 -2.1441 39 1 7.9832 -6.0306 -3.6844 40 1 6.5224 -6.9304 -4.2043 41 1 9.2515 -7.3448 -2.1001 42 1 9.7951 -8.8069 -4.6047 43 1 6.4296 -6.8672 -0.2770 44 1 5.4667 -8.1074 -1.1256 45 1 3.4817 -0.8954 -2.8320 46 1 2.5944 -2.3899 -3.2159 47 1 1.7071 -0.9359 -2.6992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000646031885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:25 Heat of formation + Delta-G solvation = -72.835199 kcal Electronic energy + Delta-G solvation = -29021.476296 eV Core-core repulsion = 24977.290102 eV Total energy + Delta-G solvation = -4044.186194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.96 seconds Orbital eigenvalues (eV) -41.96652 -39.55378 -38.92800 -37.69419 -34.68460 -33.27068 -32.53650 -32.05390 -30.68005 -30.09108 -28.23829 -28.02944 -27.64596 -25.74583 -24.10187 -22.76897 -21.37928 -20.42975 -19.51494 -19.28353 -18.78545 -17.43962 -17.08243 -15.95193 -15.84499 -15.62786 -15.34422 -14.99451 -14.86648 -14.84453 -14.51450 -14.18994 -13.84119 -13.77331 -13.51029 -13.25119 -13.21053 -12.91864 -12.70445 -12.60721 -12.47144 -12.36313 -12.35821 -12.02243 -11.78523 -11.58025 -11.35395 -11.16742 -10.88229 -10.58618 -10.48272 -10.33312 -10.11393 -9.92253 -9.40057 -9.09002 -9.05704 -8.56616 -8.37195 -8.05009 -7.83643 -6.17625 -4.23698 0.93975 1.62331 1.99225 2.71110 2.98611 3.25669 3.32420 3.35852 3.84273 4.12906 4.27674 4.34536 4.56009 4.62531 4.76878 4.90053 4.96959 4.99831 5.05757 5.10082 5.23996 5.34636 5.37002 5.38245 5.43763 5.55606 5.64252 5.67828 5.75781 5.88150 6.06001 6.08359 6.15441 6.28633 6.32959 6.36457 6.56551 6.64875 6.92871 7.00028 7.14343 7.23529 7.29571 7.50510 7.60891 7.67354 7.78656 7.86356 8.17361 8.77400 9.42799 9.53549 10.90177 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.002355 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.384323 B =11888.658962 C =12229.570919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.437 3.563 3 O -0.452 6.452 4 C -0.265 4.265 5 C 0.103 3.897 6 C -0.099 4.099 7 N -0.514 5.514 8 H 0.423 0.577 9 C -0.085 4.085 10 C 0.415 3.585 11 O -0.426 6.426 12 C -0.003 4.003 13 N -0.499 5.499 14 C 0.027 3.973 15 C -0.119 4.119 16 C 0.243 3.757 17 O -0.596 6.596 18 C -0.527 4.527 19 H 0.062 0.938 20 C 0.067 3.933 21 N -0.900 5.900 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.052 3.948 27 C -0.025 4.025 28 C -0.098 4.098 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.025 0.975 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.384 0.616 42 H 0.267 0.733 43 H 0.035 0.965 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.300 13.957 11.626 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.312 3.688 3 O -0.325 6.325 4 C -0.272 4.272 5 C -0.020 4.020 6 C -0.156 4.156 7 N -0.109 5.109 8 H 0.262 0.738 9 C -0.193 4.193 10 C 0.293 3.707 11 O -0.300 6.300 12 C -0.133 4.133 13 N -0.224 5.224 14 C -0.099 4.099 15 C -0.158 4.158 16 C 0.203 3.797 17 O -0.407 6.407 18 C -0.566 4.566 19 H 0.080 0.920 20 C -0.134 4.134 21 N -0.540 5.540 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.075 4.075 27 C -0.032 4.032 28 C -0.155 4.155 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.236 0.764 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.525 14.339 11.110 24.538 hybrid contribution 1.224 -1.241 0.140 1.749 sum -15.302 13.098 11.250 23.071 Atomic orbital electron populations 1.22279 0.93694 1.04700 1.04734 1.21701 0.91154 0.86509 0.69471 1.90571 1.72605 1.34370 1.34973 1.19858 1.13518 1.00714 0.93132 1.20677 0.97576 0.88073 0.95658 1.20563 1.02920 1.03532 0.88577 1.41589 1.42525 1.19668 1.07087 0.73810 1.19738 1.14642 1.02376 0.82592 1.20033 0.77202 0.84707 0.88731 1.90546 1.48621 1.75563 1.15221 1.22702 1.00118 0.94371 0.96081 1.64851 1.31836 1.10067 1.15614 1.23542 0.93613 0.96202 0.96593 1.22995 0.97840 0.95256 0.99680 1.19339 0.80814 0.92960 0.86608 1.86057 1.17570 1.91940 1.45090 1.21681 1.11363 0.97057 1.26483 0.91995 1.25021 0.95082 0.97985 0.95334 1.69619 1.14542 1.35502 1.34330 0.86449 0.77246 0.84231 0.79202 1.20507 1.21174 1.19846 1.22942 0.93990 0.94189 0.96351 1.20082 0.95994 0.91948 0.95195 1.20484 1.01783 1.02669 0.90545 0.88852 0.89925 0.88844 0.89593 0.89624 0.90530 0.92252 0.88368 0.88939 0.95692 0.91795 0.91335 0.76405 0.92337 0.94709 0.90161 0.90677 0.89182 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 10.23 36.01 0.37 -0.81 16 2 C 0.44 4.35 6.51 -30.91 -0.20 4.15 16 3 O -0.45 -6.08 17.85 5.52 0.10 -5.98 16 4 C -0.26 -2.81 5.80 -105.13 -0.61 -3.42 16 5 C 0.10 0.88 7.20 -81.47 -0.59 0.29 16 6 C -0.10 -0.47 10.19 36.01 0.37 -0.10 16 7 N -0.51 -4.58 5.86 -6.55 -0.04 -4.61 16 8 H 0.42 2.60 8.62 -40.82 -0.35 2.25 16 9 C -0.08 -1.05 6.76 -83.97 -0.57 -1.61 16 10 C 0.42 6.17 6.66 -33.03 -0.22 5.95 16 11 O -0.43 -7.50 11.77 5.44 0.06 -7.44 16 12 C 0.00 -0.05 4.95 -4.98 -0.02 -0.07 16 13 N -0.50 -9.85 5.26 -231.89 -1.22 -11.07 16 14 C 0.03 0.58 5.30 -1.90 -0.01 0.57 16 15 C -0.12 -2.89 5.50 -24.88 -0.14 -3.03 16 16 C 0.24 6.14 0.99 -90.41 -0.09 6.05 16 17 O -0.60 -15.74 12.93 -35.23 -0.46 -16.19 16 18 C -0.53 -14.33 8.10 -34.44 -0.28 -14.61 16 19 H 0.06 1.67 7.35 -52.49 -0.39 1.28 16 20 C 0.07 1.81 5.26 -17.82 -0.09 1.71 16 21 N -0.90 -24.42 10.88 55.43 0.60 -23.82 16 22 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 C 0.05 1.14 6.16 -2.75 -0.02 1.12 16 27 C -0.03 -0.31 6.26 -103.63 -0.65 -0.96 16 28 C -0.10 -1.16 9.61 36.01 0.35 -0.81 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.43 8.06 -51.93 -0.42 0.01 16 34 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.83 7.81 -51.93 -0.41 0.43 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 1.95 5.97 -51.93 -0.31 1.64 16 38 H 0.02 0.52 8.02 -51.93 -0.42 0.11 16 39 H 0.06 1.61 8.06 -51.93 -0.42 1.19 16 40 H 0.07 1.77 7.86 -51.93 -0.41 1.36 16 41 H 0.38 10.35 7.05 45.56 0.32 10.67 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.03 0.72 7.39 -51.93 -0.38 0.34 16 44 H 0.08 1.73 7.40 -51.93 -0.38 1.34 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.09 1.17 6.40 -51.93 -0.33 0.83 16 47 H 0.06 0.60 8.05 -51.93 -0.42 0.18 16 LS Contribution 384.18 15.07 5.79 5.79 Total: -1.00 -32.98 384.18 -8.99 -41.96 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.40 Total: 11.00 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -2.40 Total: -5.59 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.66 Total: -39.51 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.29 Total: -29.62 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.98 -8.99 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000646031885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.872 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.97 seconds