Wall clock time and date at job start Tue Mar 31 2020 20:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21320 * 120.00244 * 2 1 4 4 C 1.46663 * 120.00011 * 179.97438 * 2 1 3 5 5 C 1.38731 * 126.45220 * 274.70606 * 4 2 1 6 6 C 1.50707 * 125.67566 * 359.96555 * 5 4 2 7 7 N 1.33988 * 108.64471 * 180.22564 * 5 4 2 8 8 H 0.96996 * 125.33521 * 179.70086 * 7 5 4 9 9 C 1.38055 * 109.33540 * 359.57354 * 7 5 4 10 10 C 1.41591 * 125.93773 * 180.17306 * 9 7 5 11 11 O 1.21413 * 119.99458 * 180.29847 * 10 9 7 12 12 C 1.50695 * 120.00253 * 0.30016 * 10 9 7 13 13 N 1.46904 * 109.46981 * 180.02562 * 12 10 9 14 14 C 1.48531 * 111.00399 * 52.60294 * 13 12 10 15 15 C 1.54930 * 103.22773 * 159.72014 * 14 13 12 16 16 C 1.54593 * 102.92332 * 322.58293 * 15 14 13 17 17 O 1.42890 * 110.39499 * 262.99779 * 16 15 14 18 18 C 1.50701 * 110.30837 * 140.87117 * 16 15 14 19 19 H 1.08000 * 120.00570 * 244.28765 * 18 16 15 20 20 C 1.37882 * 119.99813 * 64.28943 * 18 16 15 21 21 N 1.31515 * 120.00147 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99899 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47176 * 89.99890 * 22 20 18 24 24 H 1.48495 * 109.46822 * 209.99657 * 22 20 18 25 25 H 1.48500 * 109.47072 * 329.99404 * 22 20 18 26 26 C 1.47909 * 110.99677 * 170.00007 * 13 12 10 27 27 C 1.37722 * 108.11644 * 0.42595 * 9 7 5 28 28 C 1.50707 * 126.59427 * 179.74546 * 27 9 7 29 29 H 1.09000 * 109.46864 * 245.01480 * 1 2 3 30 30 H 1.09000 * 109.46780 * 5.01830 * 1 2 3 31 31 H 1.08999 * 109.46740 * 125.01333 * 1 2 3 32 32 H 1.09002 * 109.47132 * 84.76534 * 6 5 4 33 33 H 1.08996 * 109.46987 * 324.75970 * 6 5 4 34 34 H 1.09001 * 109.46418 * 204.76243 * 6 5 4 35 35 H 1.09003 * 109.46949 * 299.99738 * 12 10 9 36 36 H 1.08996 * 109.47433 * 59.99644 * 12 10 9 37 37 H 1.09004 * 110.66040 * 278.15522 * 14 13 12 38 38 H 1.09001 * 110.66356 * 41.28105 * 14 13 12 39 39 H 1.09001 * 110.72487 * 204.22578 * 15 14 13 40 40 H 1.09005 * 110.87697 * 81.01208 * 15 14 13 41 41 H 0.96702 * 114.00160 * 295.76821 * 17 16 15 42 42 H 0.96999 * 120.00257 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.91441 * 333.50319 * 26 13 12 44 44 H 1.09000 * 109.91926 * 94.60317 * 26 13 12 45 45 H 1.09003 * 109.47098 * 269.99982 * 28 27 9 46 46 H 1.08999 * 109.47397 * 30.00004 * 28 27 9 47 47 H 1.09001 * 109.46706 * 150.00191 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2701 0.0006 5 6 2.5732 -2.0293 1.1130 6 6 2.2406 -1.6865 2.5425 7 7 3.2444 -3.1149 0.7056 8 1 3.5957 -3.8080 1.2861 9 6 3.3554 -3.0940 -0.6704 10 6 3.9956 -4.0736 -1.4674 11 8 4.0346 -3.9438 -2.6740 12 6 4.6285 -5.2773 -0.8183 13 7 5.2219 -6.1359 -1.8521 14 6 6.1330 -5.3589 -2.7309 15 6 7.0292 -6.4512 -3.3666 16 6 7.2319 -7.4512 -2.2053 17 8 8.4736 -7.2012 -1.5439 18 6 7.1906 -8.8667 -2.7208 19 1 6.4039 -9.5347 -2.4025 20 6 8.1574 -9.3092 -3.5988 21 7 9.1152 -8.4957 -3.9868 22 14 8.1058 -11.0635 -4.2383 23 1 7.3029 -11.1120 -5.4865 24 1 9.4876 -11.5284 -4.5202 25 1 7.4859 -11.9449 -3.2164 26 6 6.0545 -7.1974 -1.2457 27 6 2.7402 -1.9517 -1.1323 28 6 2.6227 -1.5129 -2.5693 29 1 -0.3633 -0.4341 0.9315 30 1 -0.3633 1.0237 -0.0899 31 1 -0.3633 -0.5896 -0.8417 32 1 1.2344 -2.0351 2.7750 33 1 2.2916 -0.6063 2.6783 34 1 2.9556 -2.1706 3.2078 35 1 5.4059 -4.9509 -0.1274 36 1 3.8691 -5.8371 -0.2724 37 1 5.5683 -4.8297 -3.4985 38 1 6.7325 -4.6629 -2.1441 39 1 7.9832 -6.0306 -3.6844 40 1 6.5224 -6.9304 -4.2043 41 1 9.2515 -7.3448 -2.1001 42 1 9.7951 -8.8069 -4.6047 43 1 6.4296 -6.8672 -0.2770 44 1 5.4667 -8.1074 -1.1256 45 1 3.4817 -0.8954 -2.8320 46 1 2.5944 -2.3899 -3.2159 47 1 1.7071 -0.9359 -2.6992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000646031885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:17 Heat of formation + Delta-G solvation = -97.083653 kcal Electronic energy + Delta-G solvation = -29022.527788 eV Core-core repulsion = 24977.290102 eV Total energy + Delta-G solvation = -4045.237686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -42.79685 -40.80883 -39.88099 -39.24129 -36.47618 -34.13791 -34.13183 -33.32551 -32.09565 -30.77023 -29.85988 -29.13548 -28.73744 -27.12525 -25.72560 -23.66954 -22.51606 -21.87912 -21.30880 -20.24219 -19.58710 -19.14700 -18.40626 -17.09818 -17.02461 -16.80458 -16.64092 -16.43589 -16.06806 -15.93889 -15.67923 -15.39676 -15.13766 -15.05463 -14.61968 -14.29658 -14.14215 -14.05397 -13.83847 -13.76930 -13.38634 -13.29172 -13.26782 -13.09481 -13.01002 -12.99008 -12.95563 -12.65913 -12.54523 -12.40134 -12.33759 -12.11940 -11.91127 -11.17276 -10.92832 -10.66524 -10.47603 -10.06374 -9.88999 -9.42292 -9.16629 -8.22004 -6.35758 -0.01117 0.88225 1.22418 1.40750 1.42137 1.51974 1.95981 2.00391 2.38815 2.75658 3.04559 3.17587 3.35860 3.69047 3.86824 3.88305 4.04551 4.15314 4.21424 4.25945 4.31697 4.39410 4.42277 4.43947 4.50679 4.57946 4.63860 4.69161 4.70396 4.76114 4.78531 4.86433 4.98387 5.06161 5.07112 5.11794 5.26286 5.30356 5.37284 5.51547 5.56831 5.70005 5.74861 5.88691 6.08109 6.13534 6.36295 6.51852 6.63642 6.69042 7.33626 7.41866 8.84316 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.002355 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.384323 B =11888.658962 C =12229.570919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.442 3.558 3 O -0.497 6.497 4 C -0.290 4.290 5 C 0.131 3.869 6 C -0.100 4.100 7 N -0.501 5.501 8 H 0.438 0.562 9 C -0.109 4.109 10 C 0.419 3.581 11 O -0.467 6.467 12 C -0.005 4.005 13 N -0.508 5.508 14 C 0.045 3.955 15 C -0.113 4.113 16 C 0.226 3.774 17 O -0.601 6.601 18 C -0.552 4.552 19 H 0.058 0.942 20 C 0.023 3.977 21 N -0.918 5.918 22 Si 0.962 3.038 23 H -0.278 1.278 24 H -0.281 1.281 25 H -0.269 1.269 26 C 0.062 3.938 27 C -0.037 4.037 28 C -0.097 4.097 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.025 0.975 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.378 0.622 42 H 0.269 0.731 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.304 13.870 14.153 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.319 3.681 3 O -0.373 6.373 4 C -0.297 4.297 5 C 0.006 3.994 6 C -0.157 4.157 7 N -0.097 5.097 8 H 0.279 0.721 9 C -0.217 4.217 10 C 0.300 3.700 11 O -0.345 6.345 12 C -0.134 4.134 13 N -0.232 5.232 14 C -0.083 4.083 15 C -0.152 4.152 16 C 0.186 3.814 17 O -0.411 6.411 18 C -0.590 4.590 19 H 0.076 0.924 20 C -0.176 4.176 21 N -0.558 5.558 22 Si 0.788 3.212 23 H -0.204 1.204 24 H -0.206 1.206 25 H -0.193 1.193 26 C -0.066 4.066 27 C -0.045 4.045 28 C -0.154 4.154 29 H 0.140 0.860 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.149 0.851 37 H 0.110 0.890 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.228 0.772 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.542 14.231 13.669 27.077 hybrid contribution 1.804 -1.151 -0.567 2.213 sum -16.739 13.080 13.103 24.959 Atomic orbital electron populations 1.22303 0.90391 1.05524 1.06570 1.22224 0.92829 0.85435 0.67568 1.90563 1.73764 1.35601 1.37375 1.20104 1.14780 1.01539 0.93292 1.21307 0.94608 0.86548 0.96940 1.20784 1.05073 1.03842 0.85983 1.41556 1.42047 1.20211 1.05930 0.72072 1.19316 1.16145 1.02296 0.83956 1.20137 0.76602 0.84845 0.88402 1.90536 1.50768 1.76398 1.16748 1.22881 1.01048 0.94273 0.95167 1.64755 1.30687 1.10608 1.17199 1.23298 0.93161 0.95000 0.96819 1.22805 0.97308 0.96103 0.98978 1.19607 0.81415 0.92485 0.87875 1.86047 1.17847 1.91962 1.45198 1.21961 1.11664 0.98110 1.27238 0.92380 1.25756 0.94781 1.01643 0.95445 1.69711 1.14801 1.36883 1.34408 0.85492 0.77336 0.79864 0.78521 1.20357 1.20617 1.19334 1.22770 0.92813 0.95090 0.95880 1.20279 0.96065 0.92434 0.95695 1.20435 1.02200 1.02031 0.90692 0.85990 0.89538 0.87823 0.86779 0.89617 0.88543 0.90634 0.85104 0.89038 0.95659 0.93676 0.93743 0.77155 0.92199 0.93634 0.90049 0.91731 0.90704 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.75 10.23 71.24 0.73 -1.02 16 2 C 0.44 8.07 6.51 27.89 0.18 8.25 16 3 O -0.50 -13.11 17.85 -3.15 -0.06 -13.16 16 4 C -0.29 -5.63 5.80 -20.20 -0.12 -5.75 16 5 C 0.13 1.81 7.20 42.35 0.30 2.11 16 6 C -0.10 -0.51 10.19 71.24 0.73 0.22 16 7 N -0.50 -7.49 5.86 -174.65 -1.02 -8.51 16 8 H 0.44 3.79 8.62 -92.71 -0.80 2.99 16 9 C -0.11 -2.55 6.76 38.87 0.26 -2.29 16 10 C 0.42 12.17 6.66 26.51 0.18 12.34 16 11 O -0.47 -16.82 11.77 -3.44 -0.04 -16.86 16 12 C -0.01 -0.14 4.95 85.55 0.42 0.28 16 13 N -0.51 -19.72 5.26 -887.56 -4.67 -24.39 16 14 C 0.04 1.91 5.30 86.65 0.46 2.37 16 15 C -0.11 -5.67 5.50 31.80 0.17 -5.50 16 16 C 0.23 11.57 0.99 -10.66 -0.01 11.56 16 17 O -0.60 -32.15 12.93 -148.98 -1.93 -34.08 16 18 C -0.55 -30.30 8.10 25.60 0.21 -30.10 16 19 H 0.06 3.15 7.35 -2.91 -0.02 3.13 16 20 C 0.02 1.26 5.26 84.66 0.45 1.71 16 21 N -0.92 -50.68 10.88 21.45 0.23 -50.45 16 22 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 C 0.06 2.64 6.16 86.45 0.53 3.17 16 27 C -0.04 -0.90 6.26 -19.22 -0.12 -1.02 16 28 C -0.10 -2.35 9.61 71.24 0.68 -1.66 16 29 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.09 0.76 8.12 -2.39 -0.02 0.74 16 31 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.09 0.54 8.06 -2.39 -0.02 0.52 16 34 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.08 1.92 7.81 -2.39 -0.02 1.90 16 36 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.09 3.98 5.97 -2.38 -0.01 3.96 16 38 H 0.03 1.07 8.02 -2.39 -0.02 1.05 16 39 H 0.04 2.37 8.06 -2.39 -0.02 2.35 16 40 H 0.04 2.39 7.86 -2.38 -0.02 2.37 16 41 H 0.38 20.89 7.05 -74.06 -0.52 20.37 16 42 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.05 1.82 7.39 -2.39 -0.02 1.80 16 44 H 0.08 3.43 7.40 -2.39 -0.02 3.41 16 45 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.07 2.04 6.40 -2.39 -0.02 2.02 16 47 H 0.08 1.55 8.05 -2.39 -0.02 1.53 16 Total: -1.00 -73.83 384.18 -0.70 -74.54 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -0.31 Total: 33.06 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 5.06 Total: -5.32 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -5.46 Total: -83.35 kcal Atomic # 8 Polarization: -62.09 SS G_CDS: -2.02 Total: -64.11 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -73.83 -0.70 -74.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000646031885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.545 kcal (2) G-P(sol) polarization free energy of solvation -73.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds