Wall clock time and date at job start Tue Mar 31 2020 20:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46334 * 2 1 4 4 O 1.42905 * 109.46797 * 299.97009 * 3 2 1 5 5 C 1.53037 * 109.45876 * 119.97369 * 2 1 3 6 6 C 1.53197 * 109.31726 * 58.64094 * 5 2 1 7 7 N 1.46923 * 108.77361 * 54.63061 * 6 5 2 8 8 C 1.34780 * 120.62548 * 126.37192 * 7 6 5 9 9 O 1.21582 * 120.00071 * 5.03205 * 8 7 6 10 10 N 1.34785 * 119.99659 * 185.03355 * 8 7 6 11 11 C 1.39939 * 119.99733 * 174.47207 * 10 8 7 12 12 C 1.38964 * 120.03608 * 325.28645 * 11 10 8 13 13 C 1.38155 * 120.06708 * 179.74670 * 12 11 10 14 14 C 1.38163 * 120.13831 * 359.97438 * 13 12 11 15 15 C 1.38908 * 120.07273 * 359.97438 * 14 13 12 16 16 O 1.35749 * 120.03400 * 180.02562 * 15 14 13 17 17 C 1.34832 * 117.00110 * 185.60178 * 16 15 14 18 18 H 1.08001 * 119.99498 * 5.36228 * 17 16 15 19 19 C 1.38653 * 120.00201 * 185.36102 * 17 16 15 20 20 N 1.31560 * 119.99940 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99967 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47240 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47299 * 119.99758 * 21 19 17 24 24 H 1.48506 * 109.47100 * 240.00295 * 21 19 17 25 25 C 1.38708 * 120.03613 * 145.01549 * 11 10 8 26 26 C 1.46924 * 118.74141 * 306.64948 * 7 6 5 27 27 C 1.52763 * 109.01126 * 53.30923 * 26 7 6 28 28 H 1.08997 * 109.46914 * 300.03116 * 1 2 3 29 29 H 1.08999 * 109.47092 * 60.03049 * 1 2 3 30 30 H 1.08994 * 109.47419 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46782 * 59.96986 * 3 2 1 32 32 H 1.08995 * 109.46999 * 179.97438 * 3 2 1 33 33 H 0.96701 * 113.99727 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.49773 * 298.68735 * 5 2 1 35 35 H 1.09003 * 109.50129 * 178.59448 * 5 2 1 36 36 H 1.09002 * 109.57900 * 294.84906 * 6 5 2 37 37 H 1.08997 * 109.58825 * 174.42445 * 6 5 2 38 38 H 0.96994 * 120.00196 * 354.46768 * 10 8 7 39 39 H 1.07999 * 119.96561 * 359.73030 * 12 11 10 40 40 H 1.08000 * 119.92685 * 180.02562 * 13 12 11 41 41 H 1.08006 * 119.96524 * 179.97438 * 14 13 12 42 42 H 0.96993 * 119.99751 * 180.02562 * 20 19 17 43 43 H 1.08004 * 120.06794 * 0.26896 * 25 11 10 44 44 H 1.09005 * 109.58641 * 173.14619 * 26 7 6 45 45 H 1.08998 * 109.58913 * 293.56546 * 26 7 6 46 46 H 1.08997 * 109.56715 * 185.55517 * 27 26 7 47 47 H 1.08997 * 109.35607 * 65.49791 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 8 1.5639 2.1159 -1.1672 5 6 2.0398 -0.7209 1.2500 6 6 1.4992 -2.1543 1.2642 7 7 1.8619 -2.8090 -0.0001 8 6 2.5155 -3.9876 -0.0001 9 8 2.7299 -4.5640 1.0487 10 7 2.9316 -4.5274 -1.1630 11 6 3.7098 -5.6904 -1.1557 12 6 4.6305 -5.9048 -0.1372 13 6 5.3954 -7.0553 -0.1265 14 6 5.2474 -7.9961 -1.1273 15 6 4.3280 -7.7881 -2.1477 16 8 4.1828 -8.7133 -3.1304 17 6 3.3597 -8.3984 -4.1508 18 1 2.9194 -7.4137 -4.2052 19 6 3.0786 -9.3386 -5.1303 20 7 3.6146 -10.5382 -5.0638 21 14 1.9388 -8.9021 -6.5444 22 1 1.4708 -7.5013 -6.3887 23 1 2.6694 -9.0403 -7.8299 24 1 0.7695 -9.8176 -6.5385 25 6 3.5590 -6.6331 -2.1620 26 6 1.5039 -2.1514 -1.2643 27 6 2.0396 -0.7208 -1.2502 28 1 -0.3633 0.5143 0.8897 29 1 -0.3633 0.5134 -0.8902 30 1 -0.3634 -1.0276 0.0005 31 1 1.6759 1.9564 0.8897 32 1 3.1297 1.4427 0.0005 33 1 1.8488 3.0376 -1.2331 34 1 1.6959 -0.1936 2.1398 35 1 3.1295 -0.7432 1.2382 36 1 0.4143 -2.1345 1.3674 37 1 1.9378 -2.7019 2.0983 38 1 2.6915 -4.1098 -2.0049 39 1 4.7484 -5.1713 0.6467 40 1 6.1100 -7.2198 0.6664 41 1 5.8471 -8.8943 -1.1165 42 1 3.4182 -11.1958 -5.7492 43 1 2.8441 -6.4687 -2.9547 44 1 1.9455 -2.6973 -2.0980 45 1 0.4194 -2.1315 -1.3715 46 1 1.6955 -0.1934 -2.1399 47 1 3.1292 -0.7432 -1.2385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762812043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:14 Heat of formation + Delta-G solvation = -71.225629 kcal Electronic energy + Delta-G solvation = -28954.423923 eV Core-core repulsion = 24910.307525 eV Total energy + Delta-G solvation = -4044.116398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.93354 -39.44640 -38.53344 -36.86135 -36.21530 -34.42702 -33.70090 -32.20525 -31.41883 -29.36076 -28.65850 -27.81811 -27.12170 -25.28136 -23.73249 -23.62197 -21.77036 -21.69812 -20.04740 -19.05317 -18.14088 -17.87874 -17.68668 -17.15710 -15.96430 -15.73691 -15.45192 -15.22105 -14.99740 -14.86679 -14.79307 -14.36081 -14.02793 -13.87012 -13.73880 -13.52139 -13.39894 -12.97726 -12.85966 -12.56713 -12.35223 -12.24162 -11.93035 -11.73419 -11.53087 -11.48561 -11.12401 -11.06295 -10.92501 -10.85006 -10.76134 -10.69066 -10.42841 -10.34565 -9.95128 -9.61053 -9.42403 -8.79480 -8.72971 -7.66590 -7.10022 -6.42740 -4.02184 2.09117 2.43021 2.62472 3.12254 3.13503 3.18956 3.31793 3.75177 3.85220 3.97635 4.25540 4.35879 4.55659 4.64933 4.79151 4.80876 4.97000 5.02937 5.06062 5.12488 5.16820 5.24410 5.31122 5.33122 5.44929 5.58056 5.63073 5.64019 5.71631 5.74899 5.77392 5.90698 6.04483 6.10782 6.13380 6.24616 6.30570 6.41657 6.61768 6.83575 7.04981 7.13996 7.20502 7.27274 7.37312 7.46544 7.86627 7.98625 8.02199 8.65886 9.02915 9.74167 10.75593 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.002714 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.921079 B =10314.968000 C =11720.304915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C 0.086 3.914 4 O -0.569 6.569 5 C -0.125 4.125 6 C 0.132 3.868 7 N -0.629 5.629 8 C 0.707 3.293 9 O -0.570 6.570 10 N -0.683 5.683 11 C 0.198 3.802 12 C -0.203 4.203 13 C -0.063 4.063 14 C -0.202 4.202 15 C 0.169 3.831 16 O -0.177 6.177 17 C -0.390 4.390 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.257 4.257 26 C 0.108 3.892 27 C -0.120 4.120 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.378 0.622 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.401 0.599 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.269 0.731 43 H 0.129 0.871 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 25.011 8.773 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 C 0.008 3.992 4 O -0.375 6.375 5 C -0.164 4.164 6 C 0.009 3.991 7 N -0.367 5.367 8 C 0.410 3.590 9 O -0.446 6.446 10 N -0.332 5.332 11 C 0.105 3.895 12 C -0.224 4.224 13 C -0.082 4.082 14 C -0.222 4.222 15 C 0.115 3.885 16 O -0.081 6.081 17 C -0.467 4.467 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.279 4.279 26 C -0.016 4.016 27 C -0.158 4.158 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.224 0.776 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.238 0.762 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.146 0.854 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.771 23.593 9.272 25.795 hybrid contribution -0.542 1.110 -1.089 1.647 sum -5.313 24.703 8.183 26.560 Atomic orbital electron populations 1.21905 0.93757 1.02038 1.02280 1.20539 0.96692 0.93005 0.95634 1.22207 0.97140 0.92481 0.87325 1.86469 1.77563 1.28938 1.44485 1.21972 1.01481 0.95708 0.97208 1.21433 0.99750 0.91730 0.86232 1.47260 1.61269 1.20955 1.07237 1.15789 0.78329 0.80656 0.84254 1.90934 1.61662 1.61569 1.30456 1.42800 1.54792 1.27782 1.07829 1.17191 0.90830 0.85161 0.96336 1.20529 1.00063 1.00658 1.01167 1.20514 0.97799 0.93040 0.96814 1.20232 1.03185 1.02046 0.96741 1.19062 0.92315 0.88347 0.88776 1.84021 1.58819 1.37558 1.27661 1.21309 1.25810 0.99659 0.99906 0.89258 1.25271 0.97886 0.94718 0.98661 1.70047 1.41515 1.04041 1.34190 0.85669 0.79236 0.78680 0.79927 1.19222 1.20157 1.20187 1.20790 1.07330 0.96066 1.03718 1.21632 1.00612 0.93471 0.85860 1.21829 1.01008 0.94586 0.98385 0.92838 0.91701 0.92120 0.93655 0.93704 0.77562 0.90486 0.91187 0.91418 0.88594 0.76195 0.86449 0.86673 0.86418 0.92108 0.85368 0.90412 0.90847 0.89676 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 7.57 37.16 0.28 -0.72 16 2 C -0.06 -0.42 0.60 -154.47 -0.09 -0.51 16 3 C 0.09 0.53 5.91 37.16 0.22 0.75 16 4 O -0.57 -3.71 12.29 -35.23 -0.43 -4.15 16 5 C -0.13 -0.93 4.91 -26.61 -0.13 -1.06 16 6 C 0.13 1.30 5.95 -3.71 -0.02 1.27 16 7 N -0.63 -7.41 2.98 -178.76 -0.53 -7.95 16 8 C 0.71 11.41 8.02 -86.91 -0.70 10.71 16 9 O -0.57 -11.22 13.57 5.29 0.07 -11.14 16 10 N -0.68 -11.08 5.25 -14.24 -0.07 -11.16 16 11 C 0.20 3.95 6.25 -83.71 -0.52 3.43 16 12 C -0.20 -4.04 8.64 -39.34 -0.34 -4.38 16 13 C -0.06 -1.22 10.03 -39.64 -0.40 -1.62 16 14 C -0.20 -4.43 9.99 -39.36 -0.39 -4.83 16 15 C 0.17 4.17 6.64 -39.14 -0.26 3.91 16 16 O -0.18 -5.09 9.76 0.05 0.00 -5.09 16 17 C -0.39 -10.91 9.44 30.89 0.29 -10.62 16 18 H 0.09 2.30 5.29 -52.49 -0.28 2.02 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 21 Si 0.94 20.48 29.55 -169.99 -5.02 15.45 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 C -0.26 -5.71 9.05 -39.21 -0.35 -6.07 16 26 C 0.11 0.99 5.94 -3.93 -0.02 0.96 16 27 C -0.12 -0.97 4.76 -26.83 -0.13 -1.10 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.50 7.68 -51.93 -0.40 0.11 16 30 H 0.06 0.45 4.99 -51.93 -0.26 0.19 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.38 0.93 9.12 45.56 0.42 1.35 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.59 6.69 -51.93 -0.35 0.24 16 37 H 0.10 1.11 7.03 -51.93 -0.37 0.74 16 38 H 0.40 5.33 6.28 -40.82 -0.26 5.08 16 39 H 0.12 2.30 6.53 -52.49 -0.34 1.96 16 40 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.13 2.80 5.71 -52.48 -0.30 2.50 16 44 H 0.08 0.69 5.57 -51.93 -0.29 0.40 16 45 H 0.07 0.61 6.70 -51.93 -0.35 0.27 16 46 H 0.08 0.69 7.64 -51.93 -0.40 0.30 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 370.09 15.07 5.58 5.58 Total: -1.00 -34.70 370.09 -8.00 -42.71 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -5.68 Total: 9.30 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.67 Total: -8.90 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.15 Total: -43.76 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.36 Total: -20.38 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.70 -8.00 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762812043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.521 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds