Wall clock time and date at job start Tue Mar 31 2020 20:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46334 * 2 1 4 4 O 1.42905 * 109.46797 * 299.97009 * 3 2 1 5 5 C 1.53037 * 109.45876 * 119.97369 * 2 1 3 6 6 C 1.53197 * 109.31726 * 58.64094 * 5 2 1 7 7 N 1.46923 * 108.77361 * 54.63061 * 6 5 2 8 8 C 1.34780 * 120.62548 * 126.37192 * 7 6 5 9 9 O 1.21582 * 120.00071 * 5.03205 * 8 7 6 10 10 N 1.34785 * 119.99659 * 185.03355 * 8 7 6 11 11 C 1.39939 * 119.99733 * 174.47207 * 10 8 7 12 12 C 1.38964 * 120.03608 * 325.28645 * 11 10 8 13 13 C 1.38155 * 120.06708 * 179.74670 * 12 11 10 14 14 C 1.38163 * 120.13831 * 359.97438 * 13 12 11 15 15 C 1.38908 * 120.07273 * 359.97438 * 14 13 12 16 16 O 1.35749 * 120.03400 * 180.02562 * 15 14 13 17 17 C 1.34832 * 117.00110 * 185.60178 * 16 15 14 18 18 H 1.08001 * 119.99498 * 5.36228 * 17 16 15 19 19 C 1.38653 * 120.00201 * 185.36102 * 17 16 15 20 20 N 1.31560 * 119.99940 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99967 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47240 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47299 * 119.99758 * 21 19 17 24 24 H 1.48506 * 109.47100 * 240.00295 * 21 19 17 25 25 C 1.38708 * 120.03613 * 145.01549 * 11 10 8 26 26 C 1.46924 * 118.74141 * 306.64948 * 7 6 5 27 27 C 1.52763 * 109.01126 * 53.30923 * 26 7 6 28 28 H 1.08997 * 109.46914 * 300.03116 * 1 2 3 29 29 H 1.08999 * 109.47092 * 60.03049 * 1 2 3 30 30 H 1.08994 * 109.47419 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46782 * 59.96986 * 3 2 1 32 32 H 1.08995 * 109.46999 * 179.97438 * 3 2 1 33 33 H 0.96701 * 113.99727 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.49773 * 298.68735 * 5 2 1 35 35 H 1.09003 * 109.50129 * 178.59448 * 5 2 1 36 36 H 1.09002 * 109.57900 * 294.84906 * 6 5 2 37 37 H 1.08997 * 109.58825 * 174.42445 * 6 5 2 38 38 H 0.96994 * 120.00196 * 354.46768 * 10 8 7 39 39 H 1.07999 * 119.96561 * 359.73030 * 12 11 10 40 40 H 1.08000 * 119.92685 * 180.02562 * 13 12 11 41 41 H 1.08006 * 119.96524 * 179.97438 * 14 13 12 42 42 H 0.96993 * 119.99751 * 180.02562 * 20 19 17 43 43 H 1.08004 * 120.06794 * 0.26896 * 25 11 10 44 44 H 1.09005 * 109.58641 * 173.14619 * 26 7 6 45 45 H 1.08998 * 109.58913 * 293.56546 * 26 7 6 46 46 H 1.08997 * 109.56715 * 185.55517 * 27 26 7 47 47 H 1.08997 * 109.35607 * 65.49791 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 8 1.5639 2.1159 -1.1672 5 6 2.0398 -0.7209 1.2500 6 6 1.4992 -2.1543 1.2642 7 7 1.8619 -2.8090 -0.0001 8 6 2.5155 -3.9876 -0.0001 9 8 2.7299 -4.5640 1.0487 10 7 2.9316 -4.5274 -1.1630 11 6 3.7098 -5.6904 -1.1557 12 6 4.6305 -5.9048 -0.1372 13 6 5.3954 -7.0553 -0.1265 14 6 5.2474 -7.9961 -1.1273 15 6 4.3280 -7.7881 -2.1477 16 8 4.1828 -8.7133 -3.1304 17 6 3.3597 -8.3984 -4.1508 18 1 2.9194 -7.4137 -4.2052 19 6 3.0786 -9.3386 -5.1303 20 7 3.6146 -10.5382 -5.0638 21 14 1.9388 -8.9021 -6.5444 22 1 1.4708 -7.5013 -6.3887 23 1 2.6694 -9.0403 -7.8299 24 1 0.7695 -9.8176 -6.5385 25 6 3.5590 -6.6331 -2.1620 26 6 1.5039 -2.1514 -1.2643 27 6 2.0396 -0.7208 -1.2502 28 1 -0.3633 0.5143 0.8897 29 1 -0.3633 0.5134 -0.8902 30 1 -0.3634 -1.0276 0.0005 31 1 1.6759 1.9564 0.8897 32 1 3.1297 1.4427 0.0005 33 1 1.8488 3.0376 -1.2331 34 1 1.6959 -0.1936 2.1398 35 1 3.1295 -0.7432 1.2382 36 1 0.4143 -2.1345 1.3674 37 1 1.9378 -2.7019 2.0983 38 1 2.6915 -4.1098 -2.0049 39 1 4.7484 -5.1713 0.6467 40 1 6.1100 -7.2198 0.6664 41 1 5.8471 -8.8943 -1.1165 42 1 3.4182 -11.1958 -5.7492 43 1 2.8441 -6.4687 -2.9547 44 1 1.9455 -2.6973 -2.0980 45 1 0.4194 -2.1315 -1.3715 46 1 1.6955 -0.1934 -2.1399 47 1 3.1292 -0.7432 -1.2385 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762812043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:13 Heat of formation + Delta-G solvation = -95.726111 kcal Electronic energy + Delta-G solvation = -28955.486343 eV Core-core repulsion = 24910.307525 eV Total energy + Delta-G solvation = -4045.178819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.05839 -40.78281 -39.86127 -38.21173 -37.20737 -35.81606 -34.65826 -34.18396 -32.21076 -30.95105 -30.22883 -28.68749 -27.73724 -27.26504 -24.60776 -24.47398 -23.48724 -22.99053 -21.30348 -20.28186 -19.61261 -19.22190 -18.56886 -18.17964 -17.34408 -16.93022 -16.63525 -16.51715 -16.05874 -15.95539 -15.73980 -15.61868 -15.57066 -15.47177 -14.89929 -14.66239 -14.55980 -14.19778 -14.05618 -13.59669 -13.45482 -13.29918 -13.19631 -12.88486 -12.77821 -12.61251 -12.54413 -12.45610 -12.16879 -12.08562 -11.68039 -11.54508 -11.43843 -11.35408 -11.29088 -11.06797 -10.78317 -10.73503 -9.74456 -9.30959 -8.84027 -8.45872 -6.14389 0.44364 0.70969 1.36212 1.44382 1.47312 1.54479 2.00128 2.18340 2.72817 2.85264 3.18013 3.31493 3.49734 3.65140 3.72489 3.96492 4.10665 4.12956 4.17760 4.29935 4.32977 4.41614 4.45618 4.51766 4.57149 4.64066 4.66766 4.70491 4.75471 4.83390 4.86689 4.98274 5.01830 5.04053 5.12004 5.15162 5.18050 5.23851 5.36688 5.47450 5.53627 5.57427 5.67691 5.68832 5.86412 6.02643 6.20276 6.75779 6.96235 6.98648 7.38614 7.78391 8.77509 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014196 B = 0.002714 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.921079 B =10314.968000 C =11720.304915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 C 0.088 3.912 4 O -0.586 6.586 5 C -0.116 4.116 6 C 0.126 3.874 7 N -0.618 5.618 8 C 0.703 3.297 9 O -0.609 6.609 10 N -0.677 5.677 11 C 0.205 3.795 12 C -0.197 4.197 13 C -0.050 4.050 14 C -0.214 4.214 15 C 0.136 3.864 16 O -0.226 6.226 17 C -0.412 4.412 18 H 0.102 0.898 19 C -0.023 4.023 20 N -0.920 5.920 21 Si 1.018 2.982 22 H -0.249 1.249 23 H -0.268 1.268 24 H -0.271 1.271 25 C -0.261 4.261 26 C 0.102 3.898 27 C -0.114 4.114 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.395 0.605 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.414 0.586 39 H 0.127 0.873 40 H 0.155 0.845 41 H 0.121 0.879 42 H 0.273 0.727 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 28.308 9.308 30.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.059 4.059 3 C 0.011 3.989 4 O -0.394 6.394 5 C -0.154 4.154 6 C 0.004 3.996 7 N -0.355 5.355 8 C 0.405 3.595 9 O -0.488 6.488 10 N -0.327 5.327 11 C 0.110 3.890 12 C -0.218 4.218 13 C -0.068 4.068 14 C -0.234 4.234 15 C 0.085 3.915 16 O -0.132 6.132 17 C -0.488 4.488 18 H 0.120 0.880 19 C -0.220 4.220 20 N -0.558 5.558 21 Si 0.838 3.162 22 H -0.172 1.172 23 H -0.193 1.193 24 H -0.196 1.196 25 C -0.283 4.283 26 C -0.020 4.020 27 C -0.152 4.152 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.244 0.756 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.255 0.745 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.139 0.861 42 H 0.082 0.918 43 H 0.145 0.855 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.909 27.003 9.827 29.336 hybrid contribution -0.154 0.298 -1.020 1.074 sum -6.062 27.301 8.807 29.320 Atomic orbital electron populations 1.21852 0.93440 1.01749 1.02462 1.20546 0.96853 0.93760 0.94754 1.22160 0.97192 0.91761 0.87827 1.86419 1.77868 1.30466 1.44677 1.21900 1.00907 0.94147 0.98465 1.21633 1.00648 0.92699 0.84632 1.47343 1.59576 1.19458 1.09074 1.15947 0.78570 0.81566 0.83373 1.90903 1.63359 1.62958 1.31604 1.42687 1.54347 1.26742 1.08945 1.17210 0.90783 0.85714 0.95325 1.20820 0.99334 1.00793 1.00892 1.20903 0.97656 0.91730 0.96549 1.20471 1.03005 1.03025 0.96920 1.19575 0.93870 0.88910 0.89170 1.83987 1.60510 1.39560 1.29136 1.21834 1.25940 1.00578 1.00412 0.88039 1.26591 0.99505 0.94379 1.01553 1.70192 1.44078 1.05620 1.35928 0.84536 0.76672 0.79325 0.75710 1.17181 1.19305 1.19617 1.20792 1.07116 0.95946 1.04426 1.21857 1.01560 0.93997 0.84567 1.21766 1.00448 0.93750 0.99211 0.91844 0.92366 0.92579 0.92269 0.93574 0.75598 0.88226 0.91953 0.89925 0.90442 0.74549 0.85512 0.82777 0.86139 0.91844 0.85500 0.90180 0.89491 0.89372 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 7.57 71.98 0.54 -1.01 16 2 C -0.06 -0.68 0.60 -52.15 -0.03 -0.71 16 3 C 0.09 0.82 5.91 71.98 0.43 1.25 16 4 O -0.59 -6.09 12.29 -148.98 -1.83 -7.92 16 5 C -0.12 -1.43 4.91 30.67 0.15 -1.28 16 6 C 0.13 2.24 5.95 86.36 0.51 2.76 16 7 N -0.62 -13.50 2.98 -837.73 -2.50 -15.99 16 8 C 0.70 21.79 8.02 179.05 1.44 23.23 16 9 O -0.61 -23.41 13.57 -3.98 -0.05 -23.47 16 10 N -0.68 -21.15 5.25 -317.22 -1.67 -22.81 16 11 C 0.20 8.01 6.25 38.13 0.24 8.24 16 12 C -0.20 -7.57 8.64 22.42 0.19 -7.37 16 13 C -0.05 -1.86 10.03 22.23 0.22 -1.64 16 14 C -0.21 -9.49 9.99 22.41 0.22 -9.27 16 15 C 0.14 6.92 6.64 22.56 0.15 7.07 16 16 O -0.23 -13.61 9.76 -22.75 -0.22 -13.83 16 17 C -0.41 -23.79 9.44 67.92 0.64 -23.15 16 18 H 0.10 5.35 5.29 -2.91 -0.02 5.33 16 19 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 20 N -0.92 -56.44 13.67 21.61 0.30 -56.14 16 21 Si 1.02 42.38 29.55 68.60 2.03 44.41 16 22 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 C -0.26 -11.71 9.05 22.51 0.20 -11.51 16 26 C 0.10 1.66 5.94 86.22 0.51 2.17 16 27 C -0.11 -1.58 4.76 30.53 0.15 -1.44 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.76 7.68 -2.39 -0.02 0.74 16 30 H 0.06 0.67 4.99 -2.39 -0.01 0.66 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.39 0.94 9.12 -74.06 -0.68 0.27 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 1.25 6.69 -2.39 -0.02 1.23 16 37 H 0.08 1.71 7.03 -2.39 -0.02 1.69 16 38 H 0.41 10.44 6.28 -92.71 -0.58 9.86 16 39 H 0.13 4.72 6.53 -2.91 -0.02 4.70 16 40 H 0.15 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.12 5.16 8.06 -2.91 -0.02 5.13 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.13 5.62 5.71 -2.91 -0.02 5.60 16 44 H 0.08 1.25 5.57 -2.38 -0.01 1.24 16 45 H 0.09 1.23 6.70 -2.39 -0.02 1.22 16 46 H 0.09 1.23 7.64 -2.39 -0.02 1.21 16 47 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -78.21 370.09 1.86 -76.35 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.23 Total: 32.90 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 6.04 Total: -13.48 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -3.86 Total: -94.95 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -2.11 Total: -45.22 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -78.21 1.86 -76.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762812043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.380 kcal (2) G-P(sol) polarization free energy of solvation -78.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds