Wall clock time and date at job start Tue Mar 31 2020 20:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38122 * 126.29526 * 2 1 4 4 C 1.47284 * 126.42939 * 359.97438 * 3 2 1 5 5 O 1.21525 * 119.99649 * 355.60801 * 4 3 2 6 6 O 1.34756 * 120.00132 * 175.61307 * 4 3 2 7 7 C 1.45198 * 116.99832 * 186.11010 * 6 4 3 8 8 C 1.52998 * 109.47244 * 179.38743 * 7 6 4 9 9 C 1.50700 * 115.55250 * 185.39189 * 8 7 6 10 10 H 1.07994 * 120.00257 * 143.49396 * 9 8 7 11 11 C 1.37876 * 119.99519 * 323.48609 * 9 8 7 12 12 N 1.31518 * 119.99798 * 168.57597 * 11 9 8 13 13 Si 1.86803 * 120.00324 * 348.57881 * 11 9 8 14 14 H 1.48500 * 109.46970 * 95.16656 * 13 11 9 15 15 H 1.48499 * 109.46949 * 215.16110 * 13 11 9 16 16 H 1.48494 * 109.47054 * 335.16509 * 13 11 9 17 17 C 1.53005 * 117.49714 * 39.71467 * 8 7 6 18 18 C 1.52998 * 117.49740 * 331.05700 * 8 7 6 19 19 C 1.41350 * 107.14513 * 179.84715 * 3 2 1 20 20 N 1.30433 * 108.01181 * 0.41488 * 19 3 2 21 21 N 1.34229 * 126.29604 * 180.30347 * 2 1 3 22 22 C 1.46503 * 125.74244 * 359.97438 * 21 2 1 23 23 C 1.53177 * 109.54500 * 239.82385 * 22 21 2 24 24 C 1.53103 * 109.15609 * 183.24302 * 23 22 21 25 25 O 1.42902 * 109.48604 * 57.47115 * 24 23 22 26 26 C 1.42894 * 114.10186 * 298.88931 * 25 24 23 27 27 C 1.53098 * 109.41621 * 61.15882 * 26 25 24 28 28 H 1.08992 * 109.47452 * 269.69523 * 1 2 3 29 29 H 1.08996 * 109.46701 * 29.69885 * 1 2 3 30 30 H 1.09003 * 109.46964 * 149.69312 * 1 2 3 31 31 H 1.09000 * 109.47279 * 299.39069 * 7 6 4 32 32 H 1.08999 * 109.47169 * 59.38505 * 7 6 4 33 33 H 0.97003 * 120.00004 * 180.02562 * 12 11 9 34 34 H 1.08997 * 117.49692 * 0.02562 * 17 8 7 35 35 H 1.09003 * 117.49671 * 145.02248 * 17 8 7 36 36 H 1.09001 * 117.50262 * 214.98229 * 18 8 7 37 37 H 1.09008 * 117.49797 * 359.97438 * 18 8 7 38 38 H 1.07995 * 125.99432 * 180.15900 * 19 3 2 39 39 H 1.08997 * 109.54454 * 0.02562 * 22 21 2 40 40 H 1.09001 * 109.52186 * 303.06107 * 23 22 21 41 41 H 1.09001 * 109.51948 * 63.24683 * 23 22 21 42 42 H 1.09002 * 109.40651 * 297.49071 * 24 23 22 43 43 H 1.09003 * 109.48311 * 177.50350 * 24 23 22 44 44 H 1.09000 * 109.48238 * 301.17368 * 26 25 24 45 45 H 1.09005 * 109.48261 * 181.14367 * 26 25 24 46 46 H 1.09000 * 109.51911 * 182.48724 * 27 26 25 47 47 H 1.08994 * 109.57040 * 62.32688 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 -0.0005 5 8 0.7048 2.7881 -0.0816 6 8 2.7982 3.5086 0.0888 7 6 2.2905 4.8626 0.2200 8 6 3.4635 5.8395 0.3224 9 6 3.0923 7.2752 0.5907 10 1 3.7174 7.8849 1.2261 11 6 1.9545 7.8103 0.0249 12 7 1.5063 8.9788 0.4290 13 14 1.0495 6.8755 -1.3155 14 1 -0.0542 6.0874 -0.7106 15 1 0.4897 7.8377 -2.2983 16 1 1.9936 5.9584 -2.0031 17 6 4.6797 5.5789 -0.5688 18 6 4.7643 5.3194 0.9375 19 6 3.6599 0.6495 0.0036 20 7 3.6340 -0.6545 -0.0034 21 7 2.3016 -1.0818 -0.0057 22 6 1.8498 -2.4754 -0.0126 23 6 2.3825 -3.1929 1.2315 24 6 1.9737 -4.6673 1.1748 25 8 2.4738 -5.2547 -0.0280 26 6 1.9711 -4.6546 -1.2234 27 6 2.3817 -3.1802 -1.2643 28 1 -0.3634 -0.0055 1.0276 29 1 -0.3632 0.8927 -0.5091 30 1 -0.3633 -0.8872 -0.5186 31 1 1.6864 5.1103 -0.6528 32 1 1.6776 4.9353 1.1184 33 1 0.7056 9.3551 0.0312 34 1 4.6438 4.7118 -1.2282 35 1 5.2114 6.4460 -0.9607 36 1 5.3518 6.0158 1.5359 37 1 4.7842 4.2814 1.2696 38 1 4.5461 1.2667 0.0070 39 1 0.7602 -2.5056 -0.0128 40 1 3.4696 -3.1184 1.2575 41 1 1.9633 -2.7314 2.1256 42 1 0.8864 -4.7426 1.1913 43 1 2.3876 -5.1927 2.0355 44 1 0.8838 -4.7297 -1.2384 45 1 2.3832 -5.1709 -2.0905 46 1 1.9619 -2.7098 -2.1534 47 1 3.4686 -3.1046 -1.2908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766652166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:22 Heat of formation + Delta-G solvation = -22.654716 kcal Electronic energy + Delta-G solvation = -29066.818229 eV Core-core repulsion = 25024.808024 eV Total energy + Delta-G solvation = -4042.010205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.80851 -39.87669 -39.42201 -37.05602 -35.22473 -35.16116 -32.63901 -32.25322 -31.76919 -30.84383 -28.18983 -27.29103 -25.66537 -25.02667 -24.21236 -22.79075 -21.90368 -21.34676 -20.02164 -19.68146 -19.11187 -17.88221 -16.84051 -16.66910 -16.65865 -16.29846 -16.06482 -15.64976 -15.45402 -15.36648 -14.62963 -14.29971 -14.18228 -14.12661 -13.72227 -13.47209 -13.23176 -13.12854 -12.92341 -12.71326 -12.57804 -12.55345 -12.03935 -11.93421 -11.74992 -11.56957 -11.15258 -11.08739 -10.86312 -10.73692 -10.42646 -10.39232 -10.29841 -10.10122 -9.68848 -9.60117 -9.48330 -9.22424 -8.82576 -8.66470 -8.31361 -6.23795 -4.18223 1.25789 1.93787 2.04949 3.16897 3.26627 3.28522 3.35812 3.36485 3.41428 3.83424 4.03327 4.21029 4.27970 4.30289 4.30377 4.58523 4.59084 4.67820 4.75937 4.81050 4.87404 5.00167 5.08791 5.12516 5.14801 5.25404 5.33765 5.36916 5.43037 5.51632 5.61975 5.73016 5.76682 5.81804 5.89866 6.04299 6.24570 6.33422 6.56769 6.58125 6.58293 6.64028 6.78862 7.00502 7.07939 7.26229 7.37858 7.64452 8.23289 8.43088 8.81169 9.38865 10.88112 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025765 B = 0.002569 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.466837 B =10898.529503 C =11428.704937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.160 3.840 3 C -0.275 4.275 4 C 0.536 3.464 5 O -0.524 6.524 6 O -0.347 6.347 7 C 0.090 3.910 8 C 0.004 3.996 9 C -0.482 4.482 10 H 0.085 0.915 11 C 0.077 3.923 12 N -0.885 5.885 13 Si 0.873 3.127 14 H -0.272 1.272 15 H -0.291 1.291 16 H -0.258 1.258 17 C -0.199 4.199 18 C -0.178 4.178 19 C 0.107 3.893 20 N -0.297 5.297 21 N -0.357 5.357 22 C 0.159 3.841 23 C -0.164 4.164 24 C 0.065 3.935 25 O -0.379 6.379 26 C 0.065 3.935 27 C -0.165 4.165 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.268 0.732 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.199 0.801 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.103 0.897 46 H 0.081 0.919 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 -28.786 -1.389 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.028 3.972 3 C -0.288 4.288 4 C 0.382 3.618 5 O -0.415 6.415 6 O -0.263 6.263 7 C 0.018 3.982 8 C 0.003 3.997 9 C -0.519 4.519 10 H 0.103 0.897 11 C -0.127 4.127 12 N -0.520 5.520 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.219 1.219 16 H -0.184 1.184 17 C -0.237 4.237 18 C -0.215 4.215 19 C -0.081 4.081 20 N -0.115 5.115 21 N -0.136 5.136 22 C 0.058 3.942 23 C -0.203 4.203 24 C -0.012 4.012 25 O -0.297 6.297 26 C -0.012 4.012 27 C -0.203 4.203 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.215 0.785 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.121 0.879 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.100 0.900 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.265 -29.856 -1.442 29.917 hybrid contribution -1.251 0.847 -0.728 1.677 sum -2.516 -29.008 -2.170 29.198 Atomic orbital electron populations 1.20768 0.86061 1.05079 1.04368 1.21472 0.94834 0.86237 0.94691 1.19171 0.93481 0.90661 1.25488 1.19934 0.83937 0.85286 0.72686 1.90776 1.18342 1.84787 1.47584 1.86486 1.39341 1.17667 1.82793 1.23503 0.97862 0.75276 1.01580 1.19376 0.85346 0.93841 1.01165 1.20300 1.09585 0.91247 1.30736 0.89659 1.25003 0.96439 0.95058 0.96153 1.69899 1.22927 1.18268 1.40938 0.87148 0.80488 0.78937 0.83126 1.19859 1.21880 1.18409 1.23098 1.06720 1.01440 0.92427 1.22734 1.02924 1.00050 0.95769 1.24237 0.97568 0.91401 0.94896 1.77180 0.95681 1.13140 1.25531 1.48558 1.04230 1.05323 1.55491 1.21430 0.99268 0.76372 0.97133 1.22587 1.04276 0.96278 0.97141 1.22590 0.98553 0.91875 0.88212 1.87987 1.70070 1.58012 1.13629 1.22588 0.98515 0.91700 0.88416 1.22592 1.04292 0.96379 0.97083 0.89287 0.87154 0.91089 0.91770 0.90744 0.92186 0.90949 0.89797 0.90062 0.90201 0.78451 0.87740 0.89037 0.89988 0.92700 0.87871 0.92691 0.87892 0.90049 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.45 36.01 0.34 -0.69 16 2 C 0.16 1.99 7.01 -81.59 -0.57 1.42 16 3 C -0.28 -4.20 6.12 -105.08 -0.64 -4.85 16 4 C 0.54 10.14 7.94 34.41 0.27 10.41 16 5 O -0.52 -10.91 14.60 -19.29 -0.28 -11.19 16 6 O -0.35 -7.06 8.34 -40.64 -0.34 -7.40 16 7 C 0.09 2.10 4.19 37.16 0.16 2.26 16 8 C 0.00 0.09 1.82 -155.66 -0.28 -0.19 16 9 C -0.48 -13.49 9.57 -34.44 -0.33 -13.82 16 10 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 11 C 0.08 2.22 5.43 -17.82 -0.10 2.12 16 12 N -0.88 -26.54 13.96 55.43 0.77 -25.77 16 13 Si 0.87 22.14 24.21 -169.99 -4.12 18.03 16 14 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.26 -6.39 6.39 56.52 0.36 -6.03 16 17 C -0.20 -4.29 9.67 -26.69 -0.26 -4.55 16 18 C -0.18 -3.70 9.63 -26.69 -0.26 -3.95 16 19 C 0.11 1.46 11.87 -16.96 -0.20 1.26 16 20 N -0.30 -3.86 12.33 30.87 0.38 -3.48 16 21 N -0.36 -3.95 3.26 -49.97 -0.16 -4.11 16 22 C 0.16 1.20 2.98 -67.75 -0.20 1.00 16 23 C -0.16 -1.14 5.68 -26.59 -0.15 -1.29 16 24 C 0.07 0.36 6.84 37.21 0.25 0.61 16 25 O -0.38 -2.83 10.77 -35.23 -0.38 -3.21 16 26 C 0.07 0.36 6.84 37.21 0.25 0.61 16 27 C -0.17 -1.15 5.68 -26.59 -0.15 -1.30 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.11 1.35 6.41 -51.93 -0.33 1.01 16 30 H 0.07 0.47 7.07 -51.93 -0.37 0.10 16 31 H 0.06 1.60 2.58 -51.93 -0.13 1.46 16 32 H 0.07 1.77 8.14 -51.93 -0.42 1.34 16 33 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.07 1.47 7.83 -51.93 -0.41 1.06 16 35 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.08 1.51 7.49 -51.92 -0.39 1.13 16 38 H 0.20 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.10 0.57 6.63 -51.93 -0.34 0.23 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -33.23 378.93 -7.35 -40.58 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.07 Total: 1.78 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -1.87 Total: -10.95 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.99 Total: -33.35 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -1.00 Total: -21.80 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.12 Total: 18.03 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.23 -7.35 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766652166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.924 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds