Wall clock time and date at job start Tue Mar 31 2020 20:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38122 * 126.29526 * 2 1 4 4 C 1.47284 * 126.42939 * 359.97438 * 3 2 1 5 5 O 1.21525 * 119.99649 * 355.60801 * 4 3 2 6 6 O 1.34756 * 120.00132 * 175.61307 * 4 3 2 7 7 C 1.45198 * 116.99832 * 186.11010 * 6 4 3 8 8 C 1.52998 * 109.47244 * 179.38743 * 7 6 4 9 9 C 1.50700 * 115.55250 * 185.39189 * 8 7 6 10 10 H 1.07994 * 120.00257 * 143.49396 * 9 8 7 11 11 C 1.37876 * 119.99519 * 323.48609 * 9 8 7 12 12 N 1.31518 * 119.99798 * 168.57597 * 11 9 8 13 13 Si 1.86803 * 120.00324 * 348.57881 * 11 9 8 14 14 H 1.48500 * 109.46970 * 95.16656 * 13 11 9 15 15 H 1.48499 * 109.46949 * 215.16110 * 13 11 9 16 16 H 1.48494 * 109.47054 * 335.16509 * 13 11 9 17 17 C 1.53005 * 117.49714 * 39.71467 * 8 7 6 18 18 C 1.52998 * 117.49740 * 331.05700 * 8 7 6 19 19 C 1.41350 * 107.14513 * 179.84715 * 3 2 1 20 20 N 1.30433 * 108.01181 * 0.41488 * 19 3 2 21 21 N 1.34229 * 126.29604 * 180.30347 * 2 1 3 22 22 C 1.46503 * 125.74244 * 359.97438 * 21 2 1 23 23 C 1.53177 * 109.54500 * 239.82385 * 22 21 2 24 24 C 1.53103 * 109.15609 * 183.24302 * 23 22 21 25 25 O 1.42902 * 109.48604 * 57.47115 * 24 23 22 26 26 C 1.42894 * 114.10186 * 298.88931 * 25 24 23 27 27 C 1.53098 * 109.41621 * 61.15882 * 26 25 24 28 28 H 1.08992 * 109.47452 * 269.69523 * 1 2 3 29 29 H 1.08996 * 109.46701 * 29.69885 * 1 2 3 30 30 H 1.09003 * 109.46964 * 149.69312 * 1 2 3 31 31 H 1.09000 * 109.47279 * 299.39069 * 7 6 4 32 32 H 1.08999 * 109.47169 * 59.38505 * 7 6 4 33 33 H 0.97003 * 120.00004 * 180.02562 * 12 11 9 34 34 H 1.08997 * 117.49692 * 0.02562 * 17 8 7 35 35 H 1.09003 * 117.49671 * 145.02248 * 17 8 7 36 36 H 1.09001 * 117.50262 * 214.98229 * 18 8 7 37 37 H 1.09008 * 117.49797 * 359.97438 * 18 8 7 38 38 H 1.07995 * 125.99432 * 180.15900 * 19 3 2 39 39 H 1.08997 * 109.54454 * 0.02562 * 22 21 2 40 40 H 1.09001 * 109.52186 * 303.06107 * 23 22 21 41 41 H 1.09001 * 109.51948 * 63.24683 * 23 22 21 42 42 H 1.09002 * 109.40651 * 297.49071 * 24 23 22 43 43 H 1.09003 * 109.48311 * 177.50350 * 24 23 22 44 44 H 1.09000 * 109.48238 * 301.17368 * 26 25 24 45 45 H 1.09005 * 109.48261 * 181.14367 * 26 25 24 46 46 H 1.09000 * 109.51911 * 182.48724 * 27 26 25 47 47 H 1.08994 * 109.57040 * 62.32688 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 -0.0005 5 8 0.7048 2.7881 -0.0816 6 8 2.7982 3.5086 0.0888 7 6 2.2905 4.8626 0.2200 8 6 3.4635 5.8395 0.3224 9 6 3.0923 7.2752 0.5907 10 1 3.7174 7.8849 1.2261 11 6 1.9545 7.8103 0.0249 12 7 1.5063 8.9788 0.4290 13 14 1.0495 6.8755 -1.3155 14 1 -0.0542 6.0874 -0.7106 15 1 0.4897 7.8377 -2.2983 16 1 1.9936 5.9584 -2.0031 17 6 4.6797 5.5789 -0.5688 18 6 4.7643 5.3194 0.9375 19 6 3.6599 0.6495 0.0036 20 7 3.6340 -0.6545 -0.0034 21 7 2.3016 -1.0818 -0.0057 22 6 1.8498 -2.4754 -0.0126 23 6 2.3825 -3.1929 1.2315 24 6 1.9737 -4.6673 1.1748 25 8 2.4738 -5.2547 -0.0280 26 6 1.9711 -4.6546 -1.2234 27 6 2.3817 -3.1802 -1.2643 28 1 -0.3634 -0.0055 1.0276 29 1 -0.3632 0.8927 -0.5091 30 1 -0.3633 -0.8872 -0.5186 31 1 1.6864 5.1103 -0.6528 32 1 1.6776 4.9353 1.1184 33 1 0.7056 9.3551 0.0312 34 1 4.6438 4.7118 -1.2282 35 1 5.2114 6.4460 -0.9607 36 1 5.3518 6.0158 1.5359 37 1 4.7842 4.2814 1.2696 38 1 4.5461 1.2667 0.0070 39 1 0.7602 -2.5056 -0.0128 40 1 3.4696 -3.1184 1.2575 41 1 1.9633 -2.7314 2.1256 42 1 0.8864 -4.7426 1.1913 43 1 2.3876 -5.1927 2.0355 44 1 0.8838 -4.7297 -1.2384 45 1 2.3832 -5.1709 -2.0905 46 1 1.9619 -2.7098 -2.1534 47 1 3.4686 -3.1046 -1.2908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766652166.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:21 Heat of formation + Delta-G solvation = -43.279482 kcal Electronic energy + Delta-G solvation = -29067.712586 eV Core-core repulsion = 25024.808024 eV Total energy + Delta-G solvation = -4042.904562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.77690 -41.20016 -40.15492 -38.77277 -36.85097 -35.86272 -34.41082 -33.53351 -32.22014 -31.76662 -29.70193 -28.58711 -27.20911 -26.06987 -24.68119 -24.01374 -23.07710 -22.71961 -21.08959 -20.99521 -20.61661 -19.03008 -18.73506 -17.81219 -17.59210 -17.12913 -17.09565 -16.88770 -16.62167 -16.30718 -15.84840 -15.61420 -15.18760 -15.15258 -14.80227 -14.70785 -14.49259 -14.40666 -14.23136 -13.82136 -13.52747 -13.43201 -13.41853 -13.03820 -12.69613 -12.63324 -12.42407 -12.36093 -12.11072 -12.08404 -12.06490 -11.79078 -11.47920 -11.43768 -11.36126 -11.15234 -10.72187 -10.64452 -10.48820 -10.27748 -9.86675 -8.44248 -6.40651 0.18843 0.93273 1.06541 1.24062 1.27946 1.34227 1.76741 2.08527 2.19688 2.75978 2.88949 3.16753 3.38378 3.40208 3.50537 3.66098 3.73116 3.83943 3.85039 3.96824 3.99149 4.07161 4.18618 4.19112 4.22022 4.39119 4.44675 4.49395 4.51078 4.55015 4.63144 4.74737 4.75601 4.79140 4.93309 4.95680 4.97053 4.97193 5.05841 5.11766 5.24478 5.30577 5.50753 5.56782 5.60203 5.75046 6.18556 6.20936 6.38393 6.59249 6.76890 7.18439 8.71914 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025765 B = 0.002569 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.466837 B =10898.529503 C =11428.704937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.174 3.826 3 C -0.309 4.309 4 C 0.534 3.466 5 O -0.549 6.549 6 O -0.343 6.343 7 C 0.101 3.899 8 C -0.032 4.032 9 C -0.485 4.485 10 H 0.052 0.948 11 C 0.031 3.969 12 N -0.929 5.929 13 Si 0.929 3.071 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.248 1.248 17 C -0.183 4.183 18 C -0.155 4.155 19 C 0.106 3.894 20 N -0.308 5.308 21 N -0.345 5.345 22 C 0.148 3.852 23 C -0.159 4.159 24 C 0.066 3.934 25 O -0.401 6.401 26 C 0.066 3.934 27 C -0.160 4.160 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.271 0.729 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.209 0.791 39 H 0.137 0.863 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.111 0.889 46 H 0.086 0.914 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.164 -32.480 -2.116 32.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.039 3.961 3 C -0.322 4.322 4 C 0.381 3.619 5 O -0.442 6.442 6 O -0.259 6.259 7 C 0.028 3.972 8 C -0.033 4.033 9 C -0.522 4.522 10 H 0.070 0.930 11 C -0.169 4.169 12 N -0.567 5.567 13 Si 0.758 3.242 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.173 1.173 17 C -0.220 4.220 18 C -0.192 4.192 19 C -0.082 4.082 20 N -0.127 5.127 21 N -0.123 5.123 22 C 0.048 3.952 23 C -0.198 4.198 24 C -0.011 4.011 25 O -0.320 6.320 26 C -0.011 4.011 27 C -0.198 4.198 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.226 0.774 39 H 0.154 0.846 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.129 0.871 44 H 0.097 0.903 45 H 0.129 0.871 46 H 0.105 0.895 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.813 -33.599 -2.173 33.718 hybrid contribution -1.015 1.854 -0.428 2.157 sum -2.829 -31.745 -2.601 31.976 Atomic orbital electron populations 1.20871 0.84045 1.05827 1.05495 1.21828 0.95975 0.85769 0.92486 1.19096 0.94884 0.89199 1.29011 1.20502 0.83482 0.86071 0.71802 1.90761 1.19207 1.85167 1.49056 1.86466 1.39542 1.16639 1.83279 1.23026 0.97012 0.76995 1.00207 1.19257 0.86947 0.92206 1.04900 1.20455 1.08955 0.93247 1.29587 0.92980 1.25650 0.97461 0.95771 0.98055 1.70000 1.23999 1.20024 1.42696 0.86233 0.79368 0.77831 0.80811 1.20287 1.21383 1.17301 1.23079 1.03797 1.01979 0.93187 1.22796 0.99744 1.01186 0.95460 1.24423 0.97476 0.91706 0.94614 1.77170 0.97062 1.12768 1.25659 1.48887 1.03378 1.06364 1.53707 1.21926 1.01113 0.74417 0.97741 1.22538 1.02678 0.97519 0.97015 1.22705 0.99979 0.90497 0.87916 1.87967 1.70886 1.58523 1.14627 1.22705 0.99948 0.90308 0.88129 1.22544 1.02701 0.97634 0.96942 0.87854 0.89508 0.87155 0.93209 0.92183 0.91946 0.89066 0.89937 0.89919 0.87824 0.77409 0.84567 0.91534 0.89494 0.90290 0.87126 0.90265 0.87138 0.89543 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 9.45 71.24 0.67 -1.07 16 2 C 0.17 3.93 7.01 42.16 0.30 4.23 16 3 C -0.31 -9.02 6.12 -20.16 -0.12 -9.15 16 4 C 0.53 19.80 7.94 70.20 0.56 20.35 16 5 O -0.55 -22.71 14.60 19.76 0.29 -22.42 16 6 O -0.34 -13.63 8.34 -56.67 -0.47 -14.10 16 7 C 0.10 4.67 4.19 71.98 0.30 4.97 16 8 C -0.03 -1.54 1.82 -52.93 -0.10 -1.64 16 9 C -0.49 -27.81 9.57 25.60 0.25 -27.57 16 10 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 11 C 0.03 1.79 5.43 84.65 0.46 2.25 16 12 N -0.93 -57.47 13.96 21.45 0.30 -57.18 16 13 Si 0.93 46.60 24.21 68.60 1.66 48.26 16 14 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 15 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 16 H -0.25 -11.86 6.39 99.48 0.64 -11.23 16 17 C -0.18 -7.56 9.67 30.62 0.30 -7.26 16 18 C -0.15 -6.20 9.63 30.62 0.29 -5.91 16 19 C 0.11 2.74 11.87 85.67 1.02 3.76 16 20 N -0.31 -7.54 12.33 -56.24 -0.69 -8.24 16 21 N -0.35 -6.79 3.26 -312.02 -1.02 -7.81 16 22 C 0.15 1.76 2.98 45.11 0.13 1.89 16 23 C -0.16 -1.81 5.68 30.69 0.17 -1.63 16 24 C 0.07 0.52 6.84 72.02 0.49 1.01 16 25 O -0.40 -4.95 10.77 -148.98 -1.60 -6.56 16 26 C 0.07 0.52 6.84 72.01 0.49 1.01 16 27 C -0.16 -1.81 5.68 30.69 0.17 -1.64 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.97 6.41 -2.39 -0.02 1.95 16 30 H 0.11 0.94 7.07 -2.39 -0.02 0.92 16 31 H 0.05 2.46 2.58 -2.39 -0.01 2.45 16 32 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.09 3.44 7.83 -2.39 -0.02 3.42 16 35 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.08 3.28 8.14 -2.39 -0.02 3.27 16 37 H 0.10 3.66 7.49 -2.38 -0.02 3.65 16 38 H 0.21 4.66 8.06 -2.91 -0.02 4.64 16 39 H 0.14 0.80 6.63 -2.39 -0.02 0.78 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -74.16 378.93 4.76 -69.40 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.91 Total: 15.03 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 5.39 Total: -16.39 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.41 Total: -73.22 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -1.79 Total: -43.08 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.66 Total: 48.26 kcal Total: -74.16 4.76 -69.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766652166.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.125 kcal (2) G-P(sol) polarization free energy of solvation -74.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds