Wall clock time and date at job start Tue Mar 31 2020 20:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39638 * 126.06223 * 2 1 4 4 C 1.38483 * 105.35774 * 180.09001 * 3 2 1 5 5 C 1.47006 * 126.89588 * 179.97438 * 4 3 2 6 6 O 1.21555 * 119.99637 * 1.82674 * 5 4 3 7 7 O 1.34812 * 120.00342 * 181.56071 * 5 4 3 8 8 C 1.45209 * 117.00297 * 175.59999 * 7 5 4 9 9 C 1.52998 * 109.46999 * 184.20967 * 8 7 5 10 10 C 1.50699 * 115.54949 * 306.64834 * 9 8 7 11 11 H 1.08000 * 119.99469 * 144.41982 * 10 9 8 12 12 C 1.37871 * 120.00248 * 324.41784 * 10 9 8 13 13 N 1.31508 * 120.00100 * 351.48125 * 12 10 9 14 14 Si 1.86805 * 120.00035 * 171.47793 * 12 10 9 15 15 H 1.48505 * 109.47110 * 95.07521 * 14 12 10 16 16 H 1.48496 * 109.47227 * 215.07649 * 14 12 10 17 17 H 1.48505 * 109.47035 * 335.08020 * 14 12 10 18 18 C 1.52998 * 117.49617 * 160.98105 * 9 8 7 19 19 C 1.53000 * 117.49810 * 92.32343 * 9 8 7 20 20 N 1.36645 * 106.21247 * 359.65092 * 4 3 2 21 21 C 1.46510 * 125.19841 * 180.19342 * 20 4 3 22 22 C 1.53178 * 109.54148 * 248.00893 * 21 20 4 23 23 C 1.53090 * 109.16067 * 183.15002 * 22 21 20 24 24 O 1.42900 * 109.41769 * 57.61047 * 23 22 21 25 25 C 1.42905 * 114.09281 * 298.84055 * 24 23 22 26 26 C 1.53088 * 109.41755 * 61.16152 * 25 24 23 27 27 N 1.28442 * 109.61089 * 0.22627 * 20 4 3 28 28 H 1.09000 * 109.47220 * 270.28369 * 1 2 3 29 29 H 1.08997 * 109.47029 * 30.29190 * 1 2 3 30 30 H 1.09002 * 109.46860 * 150.28898 * 1 2 3 31 31 H 1.07997 * 127.32234 * 359.96451 * 3 2 1 32 32 H 1.08994 * 109.46482 * 304.21078 * 8 7 5 33 33 H 1.09002 * 109.46448 * 64.21156 * 8 7 5 34 34 H 0.97003 * 120.00039 * 185.02433 * 13 12 10 35 35 H 1.08998 * 117.50090 * 359.97438 * 18 9 8 36 36 H 1.09003 * 117.50014 * 145.01851 * 18 9 8 37 37 H 1.08999 * 117.49872 * 214.97952 * 19 9 8 38 38 H 1.08997 * 117.49730 * 359.96683 * 19 9 8 39 39 H 1.08999 * 109.54042 * 8.27020 * 21 20 4 40 40 H 1.08997 * 109.52246 * 303.05685 * 22 21 20 41 41 H 1.08997 * 109.52217 * 63.24450 * 22 21 20 42 42 H 1.08995 * 109.48078 * 297.62092 * 23 22 21 43 43 H 1.09003 * 109.47804 * 177.58973 * 23 22 21 44 44 H 1.08998 * 109.48434 * 301.17176 * 25 24 23 45 45 H 1.09004 * 109.47758 * 181.14065 * 25 24 23 46 46 H 1.09000 * 109.52495 * 182.48354 * 26 25 24 47 47 H 1.09000 * 109.58073 * 62.32518 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3290 1.1288 0.0000 4 6 3.6244 0.6392 -0.0021 5 6 4.8656 1.4269 -0.0035 6 8 4.8149 2.6409 0.0308 7 8 6.0600 0.8028 -0.0373 8 6 7.2403 1.6429 -0.1358 9 6 8.4841 0.7615 -0.2668 10 6 8.6485 -0.2929 0.7973 11 1 9.0717 -1.2538 0.5443 12 6 8.2588 -0.0309 2.0935 13 7 7.9015 1.1865 2.4394 14 14 8.2383 -1.4053 3.3586 15 1 9.5143 -1.3980 4.1181 16 1 7.1039 -1.1996 4.2946 17 1 8.0803 -2.7108 2.6686 18 6 9.7542 1.4101 -0.8210 19 6 8.9626 0.4204 -1.6794 20 7 3.5173 -0.7230 0.0048 21 6 4.6448 -1.6587 0.0094 22 6 4.6937 -2.4086 -1.3253 23 6 5.8254 -3.4387 -1.2817 24 8 5.6143 -4.3301 -0.1850 25 6 5.6064 -3.6909 1.0931 26 6 4.4659 -2.6710 1.1450 27 7 2.2774 -1.0581 0.0058 28 1 -0.3634 0.0051 1.0276 29 1 -0.3633 0.8873 -0.5183 30 1 -0.3633 -0.8926 -0.5094 31 1 2.0201 2.1637 -0.0005 32 1 7.1565 2.2857 -1.0119 33 1 7.3238 2.2584 0.7600 34 1 7.6975 1.3872 3.3663 35 1 9.7036 2.4644 -1.0926 36 1 10.7088 1.0738 -0.4162 37 1 9.3966 -0.5666 -1.8392 38 1 8.3909 0.8234 -2.5154 39 1 5.5745 -1.1085 0.1544 40 1 3.7443 -2.9173 -1.4924 41 1 4.8762 -1.7011 -2.1341 42 1 6.7789 -2.9261 -1.1552 43 1 5.8376 -4.0049 -2.2131 44 1 6.5570 -3.1816 1.2508 45 1 5.4609 -4.4388 1.8727 46 1 4.4854 -2.1511 2.1029 47 1 3.5114 -3.1842 1.0285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860002065.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:28 Heat of formation + Delta-G solvation = -45.535448 kcal Electronic energy + Delta-G solvation = -31219.819538 eV Core-core repulsion = 27176.817149 eV Total energy + Delta-G solvation = -4043.002388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -43.76074 -41.10252 -40.25622 -38.59408 -37.00612 -35.96449 -34.20767 -33.02716 -32.28357 -32.13538 -29.10551 -28.51539 -27.45932 -25.60669 -24.74477 -24.61333 -23.00283 -22.44164 -21.51882 -21.15290 -20.64790 -18.85151 -18.62217 -17.66754 -17.63925 -17.10656 -17.01900 -16.80599 -16.52689 -16.31466 -15.89058 -15.58791 -15.46004 -14.96481 -14.85122 -14.30179 -14.10733 -14.00251 -13.86580 -13.68156 -13.55011 -13.43191 -13.30907 -12.95706 -12.85575 -12.57544 -12.53298 -12.28921 -12.14570 -12.01106 -11.97579 -11.71318 -11.51452 -11.39077 -11.36626 -11.05886 -10.75247 -10.67518 -10.31354 -10.10247 -9.91307 -8.08935 -6.20095 -0.06971 1.23967 1.34720 1.39794 1.44036 1.47350 1.64444 1.84999 2.37277 2.82437 2.99636 3.20681 3.41893 3.51134 3.63060 3.70257 3.82735 3.94069 4.04425 4.17950 4.18114 4.25189 4.28081 4.37704 4.46430 4.54394 4.57624 4.65051 4.66264 4.66616 4.76656 4.86733 4.87564 4.90181 4.91485 4.92784 4.98008 5.05099 5.16618 5.18445 5.38269 5.46006 5.50835 5.56978 5.70774 5.80572 6.09558 6.30782 6.62564 6.80570 6.98083 7.42624 8.89742 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009834 B = 0.005967 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.680180 B = 4691.104652 C = 5712.343688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.016 3.984 3 C -0.154 4.154 4 C -0.047 4.047 5 C 0.526 3.474 6 O -0.532 6.532 7 O -0.326 6.326 8 C 0.124 3.876 9 C 0.012 3.988 10 C -0.485 4.485 11 H 0.062 0.938 12 C 0.037 3.963 13 N -0.907 5.907 14 Si 0.923 3.077 15 H -0.281 1.281 16 H -0.291 1.291 17 H -0.243 1.243 18 C -0.188 4.188 19 C -0.183 4.183 20 N -0.254 5.254 21 C 0.129 3.871 22 C -0.146 4.146 23 C 0.064 3.936 24 O -0.385 6.385 25 C 0.062 3.938 26 C -0.150 4.150 27 N -0.273 5.273 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.178 0.822 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.257 0.743 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.129 0.871 44 H 0.049 0.951 45 H 0.120 0.880 46 H 0.064 0.936 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.439 -6.796 -6.075 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 C -0.183 4.183 4 C -0.172 4.172 5 C 0.371 3.629 6 O -0.422 6.422 7 O -0.241 6.241 8 C 0.051 3.949 9 C 0.012 3.988 10 C -0.523 4.523 11 H 0.080 0.920 12 C -0.163 4.163 13 N -0.546 5.546 14 Si 0.749 3.251 15 H -0.208 1.208 16 H -0.217 1.217 17 H -0.166 1.166 18 C -0.225 4.225 19 C -0.220 4.220 20 N -0.043 5.043 21 C 0.030 3.970 22 C -0.185 4.185 23 C -0.013 4.013 24 O -0.303 6.303 25 C -0.016 4.016 26 C -0.188 4.188 27 N -0.108 5.108 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.195 0.805 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.147 0.853 44 H 0.067 0.933 45 H 0.138 0.862 46 H 0.083 0.917 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.414 -7.791 -5.926 14.292 hybrid contribution 0.636 1.414 1.111 1.907 sum -9.777 -6.378 -4.815 12.628 Atomic orbital electron populations 1.20233 0.82987 1.04612 1.03988 1.22700 0.98927 0.87393 1.04911 1.22334 0.88559 1.01770 1.05605 1.20927 0.93779 0.85091 1.17407 1.20123 0.84006 0.85866 0.72924 1.90784 1.88251 1.15122 1.48063 1.86513 1.14417 1.41225 1.81908 1.22686 0.80303 0.91738 1.00212 1.18982 0.89670 0.97477 0.92690 1.20603 1.40524 0.98725 0.92411 0.91976 1.25480 0.94125 0.96792 0.99926 1.69920 1.47026 1.20197 1.17423 0.86086 0.77481 0.81837 0.79721 1.20752 1.21676 1.16607 1.22977 0.97102 0.96800 1.05670 1.22988 1.04856 0.99701 0.94440 1.46138 1.05335 1.03772 1.49088 1.22242 0.86086 0.90047 0.98669 1.22457 1.02088 0.98943 0.94994 1.22707 0.96077 0.91461 0.91037 1.87887 1.93207 1.34624 1.14623 1.22702 0.96474 0.95833 0.86564 1.22419 1.02106 0.97012 0.97310 1.73012 0.89424 1.28623 1.19752 0.89633 0.88447 0.90060 0.80461 0.94685 0.89804 0.93293 0.90378 0.89864 0.89224 0.89633 0.86204 0.89548 0.90138 0.92579 0.85349 0.93290 0.86185 0.91684 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 10.45 71.23 0.74 -0.27 16 2 C 0.02 0.45 7.22 43.04 0.31 0.76 16 3 C -0.15 -4.84 10.78 22.67 0.24 -4.60 16 4 C -0.05 -1.78 6.96 40.75 0.28 -1.50 16 5 C 0.53 23.28 7.93 70.12 0.56 23.83 16 6 O -0.53 -25.44 16.70 19.66 0.33 -25.12 16 7 O -0.33 -14.95 7.03 -57.24 -0.40 -15.36 16 8 C 0.12 5.88 4.52 71.98 0.33 6.21 16 9 C 0.01 0.56 2.13 -52.93 -0.11 0.45 16 10 C -0.49 -24.01 8.76 25.60 0.22 -23.79 16 11 H 0.06 3.01 7.83 -2.91 -0.02 2.99 16 12 C 0.04 1.88 5.21 84.65 0.44 2.32 16 13 N -0.91 -49.42 10.70 21.44 0.23 -49.19 16 14 Si 0.92 40.02 29.40 68.60 2.02 42.04 16 15 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 16 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.24 -9.56 6.14 99.48 0.61 -8.95 16 18 C -0.19 -7.68 9.96 30.62 0.30 -7.38 16 19 C -0.18 -6.97 9.92 30.62 0.30 -6.66 16 20 N -0.25 -8.81 3.11 -313.76 -0.98 -9.78 16 21 C 0.13 4.31 2.89 45.11 0.13 4.44 16 22 C -0.15 -4.04 5.71 30.68 0.18 -3.86 16 23 C 0.06 1.65 6.84 72.01 0.49 2.14 16 24 O -0.38 -10.95 10.77 -148.98 -1.60 -12.55 16 25 C 0.06 1.79 6.84 72.01 0.49 2.28 16 26 C -0.15 -4.60 5.52 30.68 0.17 -4.43 16 27 N -0.27 -8.59 11.42 -47.51 -0.54 -9.13 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.18 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.03 1.57 8.05 -2.39 -0.02 1.55 16 33 H 0.08 4.56 6.03 -2.39 -0.01 4.55 16 34 H 0.26 13.80 8.32 -92.71 -0.77 13.02 16 35 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.12 4.78 5.19 -2.39 -0.01 4.77 16 40 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.05 1.63 7.02 -2.39 -0.02 1.61 16 45 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.09 2.68 7.98 -2.39 -0.02 2.67 16 Total: -1.00 -61.08 385.45 5.01 -56.07 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.87 Total: 33.07 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.09 Total: -10.06 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -1.29 Total: -68.10 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -1.68 Total: -53.02 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.02 Total: 42.04 kcal Total: -61.08 5.01 -56.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860002065.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.537 kcal (2) G-P(sol) polarization free energy of solvation -61.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds