Wall clock time and date at job start Tue Mar 31 2020 17:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34864 * 116.99900 * 2 1 4 4 O 1.21602 * 120.00391 * 359.97438 * 3 2 1 5 5 C 1.46671 * 120.00034 * 179.97438 * 3 2 1 6 6 C 1.36333 * 125.81262 * 179.97438 * 5 3 2 7 7 C 1.41519 * 106.97427 * 180.02562 * 6 5 3 8 8 C 1.46627 * 126.50534 * 179.97438 * 7 6 5 9 9 O 1.21324 * 119.99820 * 180.02562 * 8 7 6 10 10 C 1.50703 * 120.00239 * 0.02562 * 8 7 6 11 11 N 1.46492 * 109.47146 * 180.02562 * 10 8 7 12 12 C 1.36940 * 120.00375 * 270.00205 * 11 10 8 13 13 H 1.07998 * 120.00146 * 188.72674 * 12 11 10 14 14 C 1.38808 * 119.99673 * 8.72415 * 12 11 10 15 15 N 1.31618 * 120.00369 * 27.15032 * 14 12 11 16 16 Si 1.86799 * 119.99947 * 207.15135 * 14 12 11 17 17 H 1.48501 * 109.47452 * 59.99881 * 16 14 12 18 18 H 1.48500 * 109.47406 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47019 * 299.99806 * 16 14 12 20 20 C 1.46502 * 119.99921 * 90.00281 * 11 10 8 21 21 C 1.54263 * 110.03352 * 238.26673 * 20 11 10 22 22 C 1.54963 * 104.16151 * 217.13332 * 21 20 11 23 23 C 1.54893 * 102.77786 * 37.89069 * 22 21 20 24 24 C 1.53879 * 110.03476 * 121.04997 * 20 11 10 25 25 C 1.38641 * 106.98443 * 359.97438 * 7 6 5 26 26 C 1.50706 * 125.81686 * 179.97438 * 25 7 6 27 27 N 1.34085 * 108.36771 * 0.26518 * 25 7 6 28 28 H 0.96997 * 125.35143 * 179.70171 * 27 25 7 29 29 H 1.08994 * 109.47684 * 300.00470 * 1 2 3 30 30 H 1.09007 * 109.46998 * 60.00152 * 1 2 3 31 31 H 1.09005 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.07998 * 126.51137 * 0.02689 * 6 5 3 33 33 H 1.08996 * 109.46925 * 300.00498 * 10 8 7 34 34 H 1.09001 * 109.46858 * 60.00020 * 10 8 7 35 35 H 0.96993 * 120.00365 * 174.61810 * 15 14 12 36 36 H 1.09000 * 110.01742 * 359.66055 * 20 11 10 37 37 H 1.08994 * 110.48746 * 335.78640 * 21 20 11 38 38 H 1.09007 * 110.48881 * 98.42713 * 21 20 11 39 39 H 1.08998 * 110.72303 * 279.57615 * 22 21 20 40 40 H 1.09007 * 110.92310 * 156.29597 * 22 21 20 41 41 H 1.08991 * 110.48761 * 203.40553 * 23 22 21 42 42 H 1.09001 * 110.59867 * 80.80877 * 23 22 21 43 43 H 1.08998 * 110.03343 * 238.57356 * 24 20 11 44 44 H 1.09002 * 110.02963 * 359.94821 * 24 20 11 45 45 H 1.08996 * 109.47203 * 90.00269 * 26 25 7 46 46 H 1.08999 * 109.47272 * 330.00037 * 26 25 7 47 47 H 1.08993 * 109.47100 * 210.00247 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5290 1.2785 0.0006 6 6 4.2677 2.4243 0.0001 7 6 5.6292 2.0381 0.0004 8 6 6.7900 2.9339 -0.0005 9 8 7.9122 2.4726 -0.0007 10 6 6.5893 4.4275 -0.0011 11 7 7.8930 5.0954 -0.0025 12 6 8.5034 5.4083 1.1827 13 1 9.3916 6.0227 1.1870 14 6 7.9806 4.9356 2.3785 15 7 7.2853 3.8182 2.3969 16 14 8.2637 5.8855 3.9619 17 1 7.6871 7.2478 3.8318 18 1 7.6067 5.1761 5.0890 19 1 9.7219 5.9881 4.2236 20 6 8.5439 5.4288 -1.2720 21 6 9.9286 4.7532 -1.3493 22 6 10.8207 5.7980 -2.0662 23 6 10.3137 7.1399 -1.4819 24 6 8.7884 6.9457 -1.3567 25 6 5.6570 0.6519 0.0015 26 6 6.8964 -0.2053 0.0016 27 7 4.3932 0.2040 -0.0039 28 1 4.1285 -0.7291 -0.0085 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.8864 3.4347 -0.0003 33 1 6.0312 4.7186 -0.8910 34 1 6.0319 4.7195 0.8889 35 1 6.9865 3.4467 3.2416 36 1 7.9227 5.1036 -2.1065 37 1 10.3097 4.5486 -0.3488 38 1 9.8726 3.8339 -1.9325 39 1 10.6653 5.7629 -3.1445 40 1 11.8722 5.6438 -1.8237 41 1 10.5390 7.9614 -2.1618 42 1 10.7565 7.3236 -0.5030 43 1 8.2865 7.3564 -2.2327 44 1 8.4220 7.4339 -0.4536 45 1 7.1958 -0.4112 1.0292 46 1 7.7013 0.3195 -0.5131 47 1 6.6888 -1.1443 -0.5113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878120477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:33 Heat of formation + Delta-G solvation = -55.830544 kcal Electronic energy + Delta-G solvation = -29664.721037 eV Core-core repulsion = 25621.272219 eV Total energy + Delta-G solvation = -4043.448817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.30313 -39.85590 -38.03226 -36.85635 -36.42449 -33.93795 -31.60437 -31.12283 -30.79998 -28.37282 -27.80349 -27.64749 -26.45967 -25.96166 -23.25048 -22.44373 -20.94739 -20.10542 -19.89290 -19.00406 -18.76251 -17.46672 -16.90337 -16.45258 -16.20849 -15.50682 -15.15224 -14.69260 -14.57075 -14.19280 -14.01831 -13.79312 -13.41224 -13.34206 -13.14475 -13.07602 -12.61015 -12.53231 -12.38777 -12.26809 -12.20730 -12.14356 -11.41115 -11.20892 -10.93817 -10.91690 -10.78384 -10.66651 -10.61152 -10.39062 -10.25554 -10.23572 -9.98722 -9.91561 -9.62944 -9.50956 -8.69207 -8.57094 -8.09851 -7.83480 -6.72928 -5.72822 -2.93737 1.38567 2.38106 2.59839 3.19267 3.22422 3.45705 3.52667 3.54408 4.43507 4.59114 4.86717 4.92917 5.01092 5.08316 5.23861 5.32449 5.33796 5.37574 5.44889 5.48574 5.59897 5.73117 5.79184 5.91567 6.06759 6.15476 6.15967 6.29677 6.30649 6.33634 6.38725 6.47229 6.57495 6.58972 6.64297 6.69717 6.88556 6.91191 6.96422 7.01043 7.20289 7.35022 7.35479 7.45397 7.52045 7.76175 7.93125 8.41143 9.23748 9.37934 9.96916 10.40499 11.38033 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012834 B = 0.003489 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.202592 B = 8024.352759 C = 8683.957796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.369 6.369 3 C 0.538 3.462 4 O -0.503 6.503 5 C -0.073 4.073 6 C -0.041 4.041 7 C -0.225 4.225 8 C 0.435 3.565 9 O -0.454 6.454 10 C 0.142 3.858 11 N -0.574 5.574 12 C -0.236 4.236 13 H 0.077 0.923 14 C -0.001 4.001 15 N -0.900 5.900 16 Si 0.896 3.104 17 H -0.287 1.287 18 H -0.294 1.294 19 H -0.287 1.287 20 C 0.175 3.825 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.118 4.118 24 C -0.136 4.136 25 C 0.120 3.880 26 C -0.091 4.091 27 N -0.527 5.527 28 H 0.417 0.583 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.155 0.845 33 H 0.038 0.962 34 H 0.103 0.897 35 H 0.254 0.746 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.295 -7.724 -7.756 13.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.286 6.286 3 C 0.385 3.615 4 O -0.391 6.391 5 C -0.180 4.180 6 C -0.067 4.067 7 C -0.233 4.233 8 C 0.308 3.692 9 O -0.328 6.328 10 C 0.014 3.986 11 N -0.292 5.292 12 C -0.365 4.365 13 H 0.095 0.905 14 C -0.198 4.198 15 N -0.546 5.546 16 Si 0.727 3.273 17 H -0.214 1.214 18 H -0.220 1.220 19 H -0.214 1.214 20 C 0.067 3.933 21 C -0.166 4.166 22 C -0.164 4.164 23 C -0.156 4.156 24 C -0.175 4.175 25 C -0.002 4.002 26 C -0.149 4.149 27 N -0.123 5.123 28 H 0.255 0.745 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.173 0.827 33 H 0.056 0.944 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.100 0.900 46 H 0.123 0.877 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.194 -7.813 -7.603 13.061 hybrid contribution -0.438 -0.206 1.215 1.308 sum -7.632 -8.019 -6.389 12.782 Atomic orbital electron populations 1.23227 0.76019 1.03456 1.02731 1.86546 1.23690 1.33239 1.85161 1.19930 0.87104 0.81507 0.73003 1.90892 1.65428 1.35732 1.47074 1.18700 0.85991 0.88358 1.24921 1.21330 0.91780 0.96969 0.96610 1.20991 0.95882 0.92378 1.14018 1.22371 0.85646 0.91580 0.69587 1.90306 1.26333 1.78777 1.37378 1.20995 0.88242 0.89351 0.99971 1.44126 1.17669 1.66299 1.01120 1.19021 1.09528 1.25128 0.82829 0.90533 1.24622 1.01086 0.96699 0.97362 1.69739 1.42841 1.17084 1.24941 0.86427 0.77410 0.80093 0.83401 1.21395 1.22044 1.21406 1.20935 0.92454 0.91983 0.87933 1.22795 0.96438 0.96400 1.01011 1.22480 0.98737 0.96355 0.98834 1.22256 0.96893 0.96437 0.99994 1.22635 0.94787 0.99004 1.01098 1.21278 0.85050 0.94567 0.99330 1.20582 0.93391 0.97083 1.03803 1.41588 1.05384 1.08532 1.56825 0.74517 0.91790 0.91814 0.88247 0.82741 0.94376 0.87945 0.93553 0.93244 0.90096 0.93356 0.92828 0.92935 0.93369 0.92080 0.93620 0.90531 0.90049 0.87687 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.41 16 2 O -0.37 -4.48 10.58 -40.94 -0.43 -4.92 16 3 C 0.54 8.12 7.93 34.13 0.27 8.39 16 4 O -0.50 -8.71 16.65 -19.34 -0.32 -9.03 16 5 C -0.07 -1.15 7.02 -82.42 -0.58 -1.72 16 6 C -0.04 -0.72 10.08 -39.02 -0.39 -1.12 16 7 C -0.23 -4.34 6.11 -105.11 -0.64 -4.98 16 8 C 0.43 9.77 5.19 -30.92 -0.16 9.60 16 9 O -0.45 -11.28 14.54 5.52 0.08 -11.20 16 10 C 0.14 3.21 4.90 -5.20 -0.03 3.19 16 11 N -0.57 -13.53 1.96 -165.76 -0.33 -13.86 16 12 C -0.24 -6.14 7.63 -15.06 -0.11 -6.25 16 13 H 0.08 2.00 7.72 -52.49 -0.41 1.60 16 14 C 0.00 -0.02 4.83 -17.43 -0.08 -0.10 16 15 N -0.90 -24.63 9.05 55.49 0.50 -24.13 16 16 Si 0.90 21.64 29.64 -169.99 -5.04 16.60 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 C 0.17 3.56 3.42 -66.81 -0.23 3.33 16 21 C -0.13 -2.52 6.42 -25.03 -0.16 -2.68 16 22 C -0.13 -2.05 6.91 -24.70 -0.17 -2.22 16 23 C -0.12 -1.93 6.83 -25.07 -0.17 -2.11 16 24 C -0.14 -2.46 6.15 -25.61 -0.16 -2.62 16 25 C 0.12 1.95 7.21 -81.46 -0.59 1.36 16 26 C -0.09 -1.30 9.88 36.01 0.36 -0.94 16 27 N -0.53 -7.23 6.00 -5.57 -0.03 -7.27 16 28 H 0.42 4.28 8.96 -40.82 -0.37 3.91 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.15 2.64 8.05 -52.49 -0.42 2.22 16 33 H 0.04 0.77 7.93 -51.93 -0.41 0.35 16 34 H 0.10 2.54 6.39 -51.93 -0.33 2.20 16 35 H 0.25 7.00 8.32 -40.82 -0.34 6.66 16 36 H 0.05 0.96 7.83 -51.93 -0.41 0.56 16 37 H 0.08 1.87 7.01 -51.93 -0.36 1.51 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.54 7.32 -51.93 -0.38 1.16 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.10 1.73 6.47 -51.93 -0.34 1.39 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 386.38 15.07 5.82 5.82 Total: -1.00 -31.28 386.38 -8.74 -40.02 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.21 Total: 5.42 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.78 Total: 2.54 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.14 Total: -45.26 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.67 Total: -25.15 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.04 Total: 16.60 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.28 -8.74 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878120477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.810 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds