Wall clock time and date at job start Tue Mar 31 2020 17:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34864 * 116.99900 * 2 1 4 4 O 1.21602 * 120.00391 * 359.97438 * 3 2 1 5 5 C 1.46671 * 120.00034 * 179.97438 * 3 2 1 6 6 C 1.36333 * 125.81262 * 179.97438 * 5 3 2 7 7 C 1.41519 * 106.97427 * 180.02562 * 6 5 3 8 8 C 1.46627 * 126.50534 * 179.97438 * 7 6 5 9 9 O 1.21324 * 119.99820 * 180.02562 * 8 7 6 10 10 C 1.50703 * 120.00239 * 0.02562 * 8 7 6 11 11 N 1.46492 * 109.47146 * 180.02562 * 10 8 7 12 12 C 1.36940 * 120.00375 * 270.00205 * 11 10 8 13 13 H 1.07998 * 120.00146 * 188.72674 * 12 11 10 14 14 C 1.38808 * 119.99673 * 8.72415 * 12 11 10 15 15 N 1.31618 * 120.00369 * 27.15032 * 14 12 11 16 16 Si 1.86799 * 119.99947 * 207.15135 * 14 12 11 17 17 H 1.48501 * 109.47452 * 59.99881 * 16 14 12 18 18 H 1.48500 * 109.47406 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47019 * 299.99806 * 16 14 12 20 20 C 1.46502 * 119.99921 * 90.00281 * 11 10 8 21 21 C 1.54263 * 110.03352 * 238.26673 * 20 11 10 22 22 C 1.54963 * 104.16151 * 217.13332 * 21 20 11 23 23 C 1.54893 * 102.77786 * 37.89069 * 22 21 20 24 24 C 1.53879 * 110.03476 * 121.04997 * 20 11 10 25 25 C 1.38641 * 106.98443 * 359.97438 * 7 6 5 26 26 C 1.50706 * 125.81686 * 179.97438 * 25 7 6 27 27 N 1.34085 * 108.36771 * 0.26518 * 25 7 6 28 28 H 0.96997 * 125.35143 * 179.70171 * 27 25 7 29 29 H 1.08994 * 109.47684 * 300.00470 * 1 2 3 30 30 H 1.09007 * 109.46998 * 60.00152 * 1 2 3 31 31 H 1.09005 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.07998 * 126.51137 * 0.02689 * 6 5 3 33 33 H 1.08996 * 109.46925 * 300.00498 * 10 8 7 34 34 H 1.09001 * 109.46858 * 60.00020 * 10 8 7 35 35 H 0.96993 * 120.00365 * 174.61810 * 15 14 12 36 36 H 1.09000 * 110.01742 * 359.66055 * 20 11 10 37 37 H 1.08994 * 110.48746 * 335.78640 * 21 20 11 38 38 H 1.09007 * 110.48881 * 98.42713 * 21 20 11 39 39 H 1.08998 * 110.72303 * 279.57615 * 22 21 20 40 40 H 1.09007 * 110.92310 * 156.29597 * 22 21 20 41 41 H 1.08991 * 110.48761 * 203.40553 * 23 22 21 42 42 H 1.09001 * 110.59867 * 80.80877 * 23 22 21 43 43 H 1.08998 * 110.03343 * 238.57356 * 24 20 11 44 44 H 1.09002 * 110.02963 * 359.94821 * 24 20 11 45 45 H 1.08996 * 109.47203 * 90.00269 * 26 25 7 46 46 H 1.08999 * 109.47272 * 330.00037 * 26 25 7 47 47 H 1.08993 * 109.47100 * 210.00247 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5290 1.2785 0.0006 6 6 4.2677 2.4243 0.0001 7 6 5.6292 2.0381 0.0004 8 6 6.7900 2.9339 -0.0005 9 8 7.9122 2.4726 -0.0007 10 6 6.5893 4.4275 -0.0011 11 7 7.8930 5.0954 -0.0025 12 6 8.5034 5.4083 1.1827 13 1 9.3916 6.0227 1.1870 14 6 7.9806 4.9356 2.3785 15 7 7.2853 3.8182 2.3969 16 14 8.2637 5.8855 3.9619 17 1 7.6871 7.2478 3.8318 18 1 7.6067 5.1761 5.0890 19 1 9.7219 5.9881 4.2236 20 6 8.5439 5.4288 -1.2720 21 6 9.9286 4.7532 -1.3493 22 6 10.8207 5.7980 -2.0662 23 6 10.3137 7.1399 -1.4819 24 6 8.7884 6.9457 -1.3567 25 6 5.6570 0.6519 0.0015 26 6 6.8964 -0.2053 0.0016 27 7 4.3932 0.2040 -0.0039 28 1 4.1285 -0.7291 -0.0085 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.8864 3.4347 -0.0003 33 1 6.0312 4.7186 -0.8910 34 1 6.0319 4.7195 0.8889 35 1 6.9865 3.4467 3.2416 36 1 7.9227 5.1036 -2.1065 37 1 10.3097 4.5486 -0.3488 38 1 9.8726 3.8339 -1.9325 39 1 10.6653 5.7629 -3.1445 40 1 11.8722 5.6438 -1.8237 41 1 10.5390 7.9614 -2.1618 42 1 10.7565 7.3236 -0.5030 43 1 8.2865 7.3564 -2.2327 44 1 8.4220 7.4339 -0.4536 45 1 7.1958 -0.4112 1.0292 46 1 7.7013 0.3195 -0.5131 47 1 6.6888 -1.1443 -0.5113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878120477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:32 Heat of formation + Delta-G solvation = -72.705912 kcal Electronic energy + Delta-G solvation = -29665.452808 eV Core-core repulsion = 25621.272219 eV Total energy + Delta-G solvation = -4044.180588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.58627 -41.01478 -39.69939 -38.48931 -37.54304 -35.72976 -32.96390 -32.66250 -32.45646 -29.42477 -29.28397 -29.13312 -28.01950 -27.36001 -24.88815 -23.83288 -22.44570 -21.36013 -21.30677 -20.68904 -19.99813 -18.97864 -18.07447 -17.99997 -17.50835 -17.23831 -16.37988 -16.26502 -15.90012 -15.80679 -15.76043 -15.26663 -14.83884 -14.64500 -14.46395 -14.33164 -14.08032 -14.01109 -13.97857 -13.70660 -13.35452 -13.18994 -13.04944 -12.73680 -12.65195 -12.49872 -12.39909 -12.09845 -11.88012 -11.87308 -11.85234 -11.75988 -11.68950 -11.55351 -11.27470 -11.18566 -10.44363 -10.03558 -9.96037 -9.19093 -8.61056 -7.75817 -4.95897 0.14051 0.90683 1.48944 1.52970 1.53034 1.57518 1.92527 2.05464 2.58997 2.81972 3.35949 3.58328 3.80468 3.87981 3.95991 4.03110 4.09387 4.17850 4.29799 4.33196 4.34055 4.49444 4.67455 4.70046 4.72599 4.74228 4.81697 4.85387 4.89058 4.98599 5.00229 5.03309 5.17228 5.19529 5.25173 5.26839 5.36331 5.37939 5.43402 5.57537 5.60484 5.70330 5.76007 5.85391 5.89693 6.40681 6.43789 6.61363 7.25603 7.62044 8.06109 8.43941 9.32175 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012834 B = 0.003489 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.202592 B = 8024.352759 C = 8683.957796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.545 3.455 4 O -0.529 6.529 5 C -0.066 4.066 6 C -0.057 4.057 7 C -0.264 4.264 8 C 0.437 3.563 9 O -0.489 6.489 10 C 0.140 3.860 11 N -0.586 5.586 12 C -0.229 4.229 13 H 0.070 0.930 14 C -0.049 4.049 15 N -0.915 5.915 16 Si 0.947 3.053 17 H -0.285 1.285 18 H -0.302 1.302 19 H -0.288 1.288 20 C 0.165 3.835 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.114 4.114 24 C -0.130 4.130 25 C 0.133 3.867 26 C -0.087 4.087 27 N -0.501 5.501 28 H 0.438 0.562 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.138 0.862 32 H 0.150 0.850 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.243 0.757 36 H 0.057 0.943 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -8.730 -9.249 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.392 3.608 4 O -0.419 6.419 5 C -0.174 4.174 6 C -0.082 4.082 7 C -0.272 4.272 8 C 0.313 3.687 9 O -0.365 6.365 10 C 0.013 3.987 11 N -0.305 5.305 12 C -0.359 4.359 13 H 0.087 0.913 14 C -0.244 4.244 15 N -0.563 5.563 16 Si 0.778 3.222 17 H -0.212 1.212 18 H -0.229 1.229 19 H -0.215 1.215 20 C 0.058 3.942 21 C -0.162 4.162 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.169 4.169 25 C 0.008 3.992 26 C -0.144 4.144 27 N -0.099 5.099 28 H 0.280 0.720 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.168 0.832 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.956 -8.838 -9.121 14.987 hybrid contribution -0.308 0.041 1.608 1.638 sum -8.264 -8.797 -7.513 14.218 Atomic orbital electron populations 1.23624 0.73725 1.06068 1.02823 1.86532 1.25785 1.31156 1.84334 1.19749 0.86660 0.82010 0.72391 1.90885 1.65882 1.36891 1.48277 1.18701 0.86766 0.88212 1.23747 1.21321 0.91586 0.97737 0.97572 1.20702 0.95325 0.93697 1.17437 1.22350 0.86146 0.91823 0.68372 1.90282 1.27690 1.79211 1.39356 1.20962 0.87954 0.90160 0.99661 1.44283 1.17993 1.66587 1.01615 1.19118 1.08888 1.23971 0.83964 0.91261 1.25153 1.02187 0.97542 0.99472 1.69909 1.44159 1.17964 1.24307 0.85609 0.76907 0.78934 0.80703 1.21159 1.22875 1.21461 1.21213 0.92590 0.93655 0.86765 1.22646 0.96999 0.97451 0.99106 1.22433 0.98466 0.94517 0.99799 1.22237 0.95178 0.97598 1.00116 1.22539 0.96496 0.96795 1.01060 1.21398 0.86420 0.93762 0.97598 1.20573 0.91582 0.98366 1.03857 1.41446 1.04132 1.09272 1.55022 0.72026 0.91969 0.91564 0.84379 0.83228 0.92255 0.90493 0.94756 0.92439 0.94201 0.93904 0.90273 0.91837 0.90142 0.93559 0.91069 0.92968 0.90341 0.90147 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.57 113.37 1.20 1.64 16 2 O -0.36 -7.84 10.58 -57.78 -0.61 -8.46 16 3 C 0.55 15.69 7.93 70.02 0.56 16.25 16 4 O -0.53 -18.00 16.65 19.50 0.32 -17.67 16 5 C -0.07 -2.03 7.02 39.95 0.28 -1.74 16 6 C -0.06 -2.04 10.08 22.63 0.23 -1.81 16 7 C -0.26 -10.41 6.11 -20.18 -0.12 -10.53 16 8 C 0.44 20.40 5.19 27.88 0.14 20.55 16 9 O -0.49 -25.34 14.54 -3.16 -0.05 -25.38 16 10 C 0.14 6.60 4.90 85.64 0.42 7.02 16 11 N -0.59 -28.55 1.96 -678.33 -1.33 -29.88 16 12 C -0.23 -12.36 7.63 84.03 0.64 -11.72 16 13 H 0.07 3.76 7.72 -2.91 -0.02 3.73 16 14 C -0.05 -2.71 4.83 84.86 0.41 -2.30 16 15 N -0.92 -52.26 9.05 21.65 0.20 -52.06 16 16 Si 0.95 46.01 29.64 68.60 2.03 48.04 16 17 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 18 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 19 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 20 C 0.16 6.73 3.42 45.72 0.16 6.88 16 21 C -0.12 -4.90 6.42 31.69 0.20 -4.70 16 22 C -0.11 -3.49 6.91 31.91 0.22 -3.27 16 23 C -0.11 -3.50 6.83 31.67 0.22 -3.28 16 24 C -0.13 -4.57 6.15 31.32 0.19 -4.37 16 25 C 0.13 4.21 7.21 42.31 0.31 4.52 16 26 C -0.09 -2.36 9.88 71.24 0.70 -1.66 16 27 N -0.50 -12.76 6.00 -171.53 -1.03 -13.79 16 28 H 0.44 7.54 8.96 -92.71 -0.83 6.71 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.14 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.15 5.37 8.05 -2.91 -0.02 5.35 16 33 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 34 H 0.08 4.02 6.39 -2.39 -0.02 4.01 16 35 H 0.24 13.97 8.32 -92.71 -0.77 13.20 16 36 H 0.06 2.22 7.83 -2.39 -0.02 2.20 16 37 H 0.04 1.91 7.01 -2.39 -0.02 1.89 16 38 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.05 2.09 7.32 -2.39 -0.02 2.08 16 45 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.08 2.67 6.47 -2.39 -0.02 2.65 16 47 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -71.12 386.38 5.44 -65.68 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.16 Total: 22.06 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.75 Total: 11.47 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -2.16 Total: -95.73 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.33 Total: -51.51 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -71.12 5.44 -65.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878120477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.029 kcal (2) G-P(sol) polarization free energy of solvation -71.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds