Wall clock time and date at job start Tue Mar 31 2020 17:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34868 * 116.99774 * 2 1 4 4 O 1.21595 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.46672 * 119.99757 * 180.02562 * 3 2 1 6 6 C 1.36328 * 125.81563 * 180.02562 * 5 3 2 7 7 C 1.41511 * 106.98241 * 180.02562 * 6 5 3 8 8 C 1.46623 * 126.51124 * 180.02562 * 7 6 5 9 9 O 1.21329 * 120.00310 * 179.97438 * 8 7 6 10 10 C 1.50706 * 119.99980 * 359.97438 * 8 7 6 11 11 N 1.46896 * 109.47266 * 180.02562 * 10 8 7 12 12 C 1.46853 * 111.00130 * 66.04439 * 11 10 8 13 13 C 1.53040 * 109.52456 * 174.16219 * 12 11 10 14 14 C 1.53118 * 109.27596 * 59.17592 * 13 12 11 15 15 C 1.53113 * 109.16618 * 302.34617 * 14 13 12 16 16 H 1.08997 * 109.50724 * 297.71328 * 15 14 13 17 17 C 1.50704 * 109.50261 * 177.59330 * 15 14 13 18 18 H 1.07995 * 120.00151 * 239.99756 * 17 15 14 19 19 C 1.37871 * 119.99494 * 60.00616 * 17 15 14 20 20 N 1.31513 * 120.00510 * 359.97438 * 19 17 15 21 21 Si 1.86808 * 119.99748 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47343 * 59.99658 * 21 19 17 23 23 H 1.48500 * 109.47328 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46816 * 299.99787 * 21 19 17 25 25 C 1.46851 * 111.00178 * 301.83593 * 11 10 8 26 26 C 1.38648 * 106.98559 * 359.97438 * 7 6 5 27 27 C 1.50697 * 125.82089 * 180.26429 * 26 7 6 28 28 N 1.34094 * 108.35975 * 359.97438 * 26 7 6 29 29 H 0.97003 * 125.34616 * 179.97438 * 28 26 7 30 30 H 1.09004 * 109.47092 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47253 * 300.00323 * 1 2 3 32 32 H 1.09004 * 109.46727 * 60.00016 * 1 2 3 33 33 H 1.08007 * 126.50443 * 359.97438 * 6 5 3 34 34 H 1.08997 * 109.46651 * 300.00152 * 10 8 7 35 35 H 1.08994 * 109.47150 * 60.00008 * 10 8 7 36 36 H 1.08998 * 109.46211 * 294.17673 * 12 11 10 37 37 H 1.08998 * 109.45995 * 54.14625 * 12 11 10 38 38 H 1.08990 * 109.50078 * 179.12043 * 13 12 11 39 39 H 1.09001 * 109.49752 * 299.23948 * 13 12 11 40 40 H 1.08999 * 109.51788 * 62.25854 * 14 13 12 41 41 H 1.09003 * 109.51908 * 182.43898 * 14 13 12 42 42 H 0.97002 * 120.00277 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.46023 * 305.85872 * 25 11 10 44 44 H 1.09007 * 109.45872 * 65.82257 * 25 11 10 45 45 H 1.09006 * 109.47039 * 269.70838 * 27 26 7 46 46 H 1.08994 * 109.47194 * 29.71840 * 27 26 7 47 47 H 1.09005 * 109.47238 * 149.71927 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5290 1.2785 -0.0006 6 6 4.2678 2.4242 -0.0001 7 6 5.6292 2.0381 -0.0016 8 6 6.7900 2.9338 -0.0012 9 8 7.9123 2.4726 -0.0021 10 6 6.5893 4.4275 0.0004 11 7 7.8966 5.0973 -0.0001 12 6 8.6178 4.8430 -1.2539 13 6 9.9052 5.6700 -1.2802 14 6 10.7770 5.2865 -0.0812 15 6 9.9855 5.5152 1.2094 16 1 9.7393 6.5729 1.3029 17 6 10.8151 5.0844 2.3914 18 1 10.4572 4.3044 3.0469 19 6 12.0312 5.6864 2.6360 20 7 12.4673 6.6360 1.8376 21 14 13.0593 5.1530 4.1016 22 1 13.3918 3.7112 3.9747 23 1 14.3125 5.9487 4.1430 24 1 12.2907 5.3755 5.3527 25 6 8.6958 4.6926 1.1635 26 6 5.6571 0.6519 -0.0022 27 6 6.8965 -0.2053 0.0019 28 7 4.3932 0.2040 -0.0007 29 1 4.1285 -0.7292 -0.0011 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.8864 3.4347 0.0003 34 1 6.0312 4.7199 -0.8891 35 1 6.0320 4.7182 0.8908 36 1 8.8653 3.7837 -1.3220 37 1 7.9884 5.1239 -2.0982 38 1 10.4479 5.4692 -2.2038 39 1 9.6577 6.7302 -1.2259 40 1 11.0568 4.2357 -0.1557 41 1 11.6753 5.9038 -0.0718 42 1 13.3230 7.0593 2.0095 43 1 8.1230 4.8642 2.0748 44 1 8.9428 3.6339 1.0839 45 1 7.1962 -0.4157 -1.0249 46 1 7.7011 0.3217 0.5146 47 1 6.6886 -1.1422 0.5188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878886335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:55 Heat of formation + Delta-G solvation = -74.935321 kcal Electronic energy + Delta-G solvation = -28927.958420 eV Core-core repulsion = 24883.681158 eV Total energy + Delta-G solvation = -4044.277262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.59 seconds Orbital eigenvalues (eV) -41.99713 -40.37511 -39.48103 -36.98204 -36.83611 -33.56142 -32.31401 -31.98353 -31.44409 -29.70489 -28.77039 -27.66798 -26.48283 -24.80916 -23.58530 -22.59763 -21.45948 -21.05826 -20.66456 -19.36297 -18.75304 -18.09912 -17.31851 -16.85720 -16.31028 -15.83633 -15.43548 -15.36024 -15.02051 -14.61787 -14.30823 -14.06556 -13.97474 -13.84618 -13.65687 -13.54261 -13.17019 -12.96359 -12.75536 -12.58628 -12.25843 -12.20973 -12.02401 -11.85467 -11.54907 -11.28327 -11.19168 -11.11548 -10.82906 -10.57949 -10.46883 -10.02574 -9.89751 -9.67906 -9.43635 -9.29481 -8.89752 -8.57595 -8.57029 -8.18156 -7.30297 -5.85920 -3.91051 0.84772 1.34066 2.16466 2.59312 2.61034 3.17799 3.39342 3.43406 3.46270 4.22373 4.41947 4.47255 4.49520 4.64442 4.69318 4.71832 4.73828 5.04239 5.08050 5.26555 5.32572 5.43696 5.44389 5.51876 5.71603 5.78424 5.83867 5.86547 5.92285 6.07693 6.20956 6.26418 6.41881 6.48165 6.67561 6.70584 6.86569 6.90577 6.97845 7.18280 7.30706 7.37974 7.51313 7.76908 7.81029 7.87693 8.02635 8.24176 8.32190 8.62886 9.12817 9.72104 11.20056 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.002459 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.232130 B =11382.562491 C =11779.546073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.367 6.367 3 C 0.537 3.463 4 O -0.496 6.496 5 C -0.059 4.059 6 C -0.040 4.040 7 C -0.264 4.264 8 C 0.388 3.612 9 O -0.444 6.444 10 C 0.016 3.984 11 N -0.522 5.522 12 C 0.052 3.948 13 C -0.115 4.115 14 C -0.108 4.108 15 C 0.057 3.943 16 H 0.030 0.970 17 C -0.509 4.509 18 H 0.052 0.948 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.889 3.111 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.048 3.952 26 C 0.142 3.858 27 C -0.103 4.103 28 N -0.520 5.520 29 H 0.425 0.575 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.163 0.837 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.031 0.969 41 H 0.088 0.912 42 H 0.259 0.741 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.095 -15.368 -6.895 26.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.284 6.284 3 C 0.383 3.617 4 O -0.383 6.383 5 C -0.166 4.166 6 C -0.065 4.065 7 C -0.271 4.271 8 C 0.265 3.735 9 O -0.320 6.320 10 C -0.114 4.114 11 N -0.244 5.244 12 C -0.076 4.076 13 C -0.153 4.153 14 C -0.146 4.146 15 C 0.038 3.962 16 H 0.048 0.952 17 C -0.548 4.548 18 H 0.070 0.930 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.717 3.283 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.078 4.078 26 C 0.018 3.982 27 C -0.160 4.160 28 N -0.115 5.115 29 H 0.263 0.737 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.180 0.820 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.105 0.895 46 H 0.127 0.873 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.784 -14.777 -6.880 26.413 hybrid contribution 0.056 -1.600 0.757 1.771 sum -20.728 -16.377 -6.123 27.117 Atomic orbital electron populations 1.23299 0.75350 1.03856 1.02957 1.86537 1.24204 1.32794 1.84886 1.19816 0.86888 0.81811 0.73229 1.90924 1.65285 1.35727 1.46392 1.18814 0.86545 0.88057 1.23219 1.21348 0.91114 0.97588 0.96465 1.20458 0.95225 0.92557 1.18877 1.23072 0.86694 0.92423 0.71349 1.90497 1.25663 1.79376 1.36441 1.22607 0.95649 0.88823 1.04289 1.62375 1.02587 1.55117 1.04320 1.22156 0.95590 0.99269 0.90540 1.21645 0.95044 0.99502 0.99123 1.21613 1.00096 0.99554 0.93363 1.18622 0.89094 0.95404 0.93062 0.95234 1.21119 1.03367 1.19845 1.10454 0.93022 1.24927 0.97642 0.95034 0.96314 1.69888 1.20422 1.25236 1.37341 0.86720 0.79633 0.78536 0.83422 1.20440 1.21410 1.20403 1.22605 0.95670 1.00199 0.89340 1.21348 0.85569 0.94173 0.97119 1.20746 0.93038 0.98061 1.04192 1.41722 1.05262 1.09189 1.55376 0.73672 0.87920 0.91550 0.91586 0.81950 0.88239 0.87787 0.93651 0.93082 0.93746 0.92413 0.95044 0.89374 0.93150 0.93141 0.92542 0.89548 0.87255 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.57 101.05 1.07 1.28 16 2 O -0.37 -3.04 10.58 -40.95 -0.43 -3.48 16 3 C 0.54 5.65 7.93 34.13 0.27 5.92 16 4 O -0.50 -6.40 16.65 -19.34 -0.32 -6.72 16 5 C -0.06 -0.61 7.02 -82.43 -0.58 -1.19 16 6 C -0.04 -0.44 10.08 -39.02 -0.39 -0.83 16 7 C -0.26 -3.22 6.11 -105.12 -0.64 -3.86 16 8 C 0.39 5.74 6.54 -30.92 -0.20 5.54 16 9 O -0.44 -7.87 10.07 5.51 0.06 -7.81 16 10 C 0.02 0.23 5.35 -4.98 -0.03 0.21 16 11 N -0.52 -9.93 4.86 -236.11 -1.15 -11.07 16 12 C 0.05 0.97 5.09 -3.83 -0.02 0.96 16 13 C -0.12 -2.38 6.09 -26.65 -0.16 -2.55 16 14 C -0.11 -2.69 5.02 -26.61 -0.13 -2.82 16 15 C 0.06 1.49 2.26 -91.69 -0.21 1.28 16 16 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 17 C -0.51 -14.46 8.56 -34.44 -0.29 -14.75 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -26.06 11.35 55.43 0.63 -25.44 16 21 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.05 1.08 4.20 -3.83 -0.02 1.06 16 26 C 0.14 1.46 7.21 -81.45 -0.59 0.87 16 27 C -0.10 -0.91 9.88 36.00 0.36 -0.56 16 28 N -0.52 -4.35 6.00 -5.57 -0.03 -4.38 16 29 H 0.42 2.28 8.96 -40.82 -0.37 1.92 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.16 1.59 8.05 -52.48 -0.42 1.16 16 34 H 0.10 1.21 8.06 -51.93 -0.42 0.80 16 35 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.05 0.89 6.00 -51.93 -0.31 0.58 16 37 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.09 2.42 6.15 -51.93 -0.32 2.11 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.05 1.12 8.12 -51.93 -0.42 0.69 16 44 H 0.06 1.32 5.36 -51.93 -0.28 1.04 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.11 1.27 6.46 -51.93 -0.34 0.93 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -33.65 380.30 -9.27 -42.92 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.06 Total: 1.21 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.66 Total: -7.79 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -0.55 Total: -40.89 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.70 Total: -18.01 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.65 -9.27 -42.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878886335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.014 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.59 seconds