Wall clock time and date at job start Tue Mar 31 2020 17:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34868 * 116.99774 * 2 1 4 4 O 1.21595 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.46672 * 119.99757 * 180.02562 * 3 2 1 6 6 C 1.36328 * 125.81563 * 180.02562 * 5 3 2 7 7 C 1.41511 * 106.98241 * 180.02562 * 6 5 3 8 8 C 1.46623 * 126.51124 * 180.02562 * 7 6 5 9 9 O 1.21329 * 120.00310 * 179.97438 * 8 7 6 10 10 C 1.50706 * 119.99980 * 359.97438 * 8 7 6 11 11 N 1.46896 * 109.47266 * 180.02562 * 10 8 7 12 12 C 1.46853 * 111.00130 * 66.04439 * 11 10 8 13 13 C 1.53040 * 109.52456 * 174.16219 * 12 11 10 14 14 C 1.53118 * 109.27596 * 59.17592 * 13 12 11 15 15 C 1.53113 * 109.16618 * 302.34617 * 14 13 12 16 16 H 1.08997 * 109.50724 * 297.71328 * 15 14 13 17 17 C 1.50704 * 109.50261 * 177.59330 * 15 14 13 18 18 H 1.07995 * 120.00151 * 239.99756 * 17 15 14 19 19 C 1.37871 * 119.99494 * 60.00616 * 17 15 14 20 20 N 1.31513 * 120.00510 * 359.97438 * 19 17 15 21 21 Si 1.86808 * 119.99748 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47343 * 59.99658 * 21 19 17 23 23 H 1.48500 * 109.47328 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46816 * 299.99787 * 21 19 17 25 25 C 1.46851 * 111.00178 * 301.83593 * 11 10 8 26 26 C 1.38648 * 106.98559 * 359.97438 * 7 6 5 27 27 C 1.50697 * 125.82089 * 180.26429 * 26 7 6 28 28 N 1.34094 * 108.35975 * 359.97438 * 26 7 6 29 29 H 0.97003 * 125.34616 * 179.97438 * 28 26 7 30 30 H 1.09004 * 109.47092 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47253 * 300.00323 * 1 2 3 32 32 H 1.09004 * 109.46727 * 60.00016 * 1 2 3 33 33 H 1.08007 * 126.50443 * 359.97438 * 6 5 3 34 34 H 1.08997 * 109.46651 * 300.00152 * 10 8 7 35 35 H 1.08994 * 109.47150 * 60.00008 * 10 8 7 36 36 H 1.08998 * 109.46211 * 294.17673 * 12 11 10 37 37 H 1.08998 * 109.45995 * 54.14625 * 12 11 10 38 38 H 1.08990 * 109.50078 * 179.12043 * 13 12 11 39 39 H 1.09001 * 109.49752 * 299.23948 * 13 12 11 40 40 H 1.08999 * 109.51788 * 62.25854 * 14 13 12 41 41 H 1.09003 * 109.51908 * 182.43898 * 14 13 12 42 42 H 0.97002 * 120.00277 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.46023 * 305.85872 * 25 11 10 44 44 H 1.09007 * 109.45872 * 65.82257 * 25 11 10 45 45 H 1.09006 * 109.47039 * 269.70838 * 27 26 7 46 46 H 1.08994 * 109.47194 * 29.71840 * 27 26 7 47 47 H 1.09005 * 109.47238 * 149.71927 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5290 1.2785 -0.0006 6 6 4.2678 2.4242 -0.0001 7 6 5.6292 2.0381 -0.0016 8 6 6.7900 2.9338 -0.0012 9 8 7.9123 2.4726 -0.0021 10 6 6.5893 4.4275 0.0004 11 7 7.8966 5.0973 -0.0001 12 6 8.6178 4.8430 -1.2539 13 6 9.9052 5.6700 -1.2802 14 6 10.7770 5.2865 -0.0812 15 6 9.9855 5.5152 1.2094 16 1 9.7393 6.5729 1.3029 17 6 10.8151 5.0844 2.3914 18 1 10.4572 4.3044 3.0469 19 6 12.0312 5.6864 2.6360 20 7 12.4673 6.6360 1.8376 21 14 13.0593 5.1530 4.1016 22 1 13.3918 3.7112 3.9747 23 1 14.3125 5.9487 4.1430 24 1 12.2907 5.3755 5.3527 25 6 8.6958 4.6926 1.1635 26 6 5.6571 0.6519 -0.0022 27 6 6.8965 -0.2053 0.0019 28 7 4.3932 0.2040 -0.0007 29 1 4.1285 -0.7292 -0.0011 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 3.8864 3.4347 0.0003 34 1 6.0312 4.7199 -0.8891 35 1 6.0320 4.7182 0.8908 36 1 8.8653 3.7837 -1.3220 37 1 7.9884 5.1239 -2.0982 38 1 10.4479 5.4692 -2.2038 39 1 9.6577 6.7302 -1.2259 40 1 11.0568 4.2357 -0.1557 41 1 11.6753 5.9038 -0.0718 42 1 13.3230 7.0593 2.0095 43 1 8.1230 4.8642 2.0748 44 1 8.9428 3.6339 1.0839 45 1 7.1962 -0.4157 -1.0249 46 1 7.7011 0.3217 0.5146 47 1 6.6886 -1.1422 0.5188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878886335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:51 Heat of formation + Delta-G solvation = -96.671618 kcal Electronic energy + Delta-G solvation = -28928.900977 eV Core-core repulsion = 24883.681158 eV Total energy + Delta-G solvation = -4045.219819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.16 seconds Orbital eigenvalues (eV) -42.81487 -41.22820 -40.69916 -38.52672 -37.58986 -35.42435 -33.63300 -32.87902 -32.71817 -31.60671 -29.39362 -28.79270 -27.35667 -26.87761 -24.68133 -23.77335 -23.13703 -22.37420 -21.47093 -20.49825 -20.11273 -19.22086 -18.37953 -18.04508 -17.55767 -16.93944 -16.75401 -16.45151 -16.25086 -16.08258 -15.71775 -15.29593 -15.21341 -14.83267 -14.66488 -14.50802 -14.33964 -14.12059 -14.01847 -13.79003 -13.58199 -13.44369 -13.17085 -13.07398 -12.88966 -12.81501 -12.72399 -12.49101 -12.22185 -11.93215 -11.89440 -11.73131 -11.57129 -11.33138 -11.19628 -10.82204 -10.61768 -10.34531 -10.26366 -9.41811 -8.79560 -8.04140 -6.17839 0.05939 0.36128 1.41379 1.43625 1.47904 1.51107 1.76168 1.90792 2.21148 2.45106 3.16684 3.21898 3.25240 3.68088 3.78766 3.93623 4.23586 4.24790 4.27602 4.30563 4.32302 4.37049 4.46656 4.61061 4.64319 4.65180 4.70556 4.72827 4.81437 4.85856 4.87071 5.00908 5.11382 5.14004 5.16221 5.22616 5.31426 5.38359 5.46372 5.55970 5.59074 5.67347 6.00858 6.16809 6.21696 6.25050 6.33079 6.51450 6.55410 6.81671 6.94259 7.48960 9.00365 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.002459 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.232130 B =11382.562491 C =11779.546073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.542 3.458 4 O -0.525 6.525 5 C -0.063 4.063 6 C -0.043 4.043 7 C -0.287 4.287 8 C 0.392 3.608 9 O -0.481 6.481 10 C 0.013 3.987 11 N -0.531 5.531 12 C 0.058 3.942 13 C -0.110 4.110 14 C -0.100 4.100 15 C 0.054 3.946 16 H -0.007 1.007 17 C -0.534 4.534 18 H 0.047 0.953 19 C 0.012 3.988 20 N -0.916 5.916 21 Si 0.954 3.046 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.271 1.271 25 C 0.066 3.934 26 C 0.153 3.847 27 C -0.101 4.101 28 N -0.500 5.500 29 H 0.441 0.559 30 H 0.135 0.865 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.171 0.829 34 H 0.131 0.869 35 H 0.117 0.883 36 H 0.037 0.963 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.015 0.985 41 H 0.056 0.944 42 H 0.260 0.740 43 H 0.045 0.955 44 H 0.047 0.953 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.004 -17.333 -7.302 29.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.280 6.280 3 C 0.388 3.612 4 O -0.414 6.414 5 C -0.170 4.170 6 C -0.068 4.068 7 C -0.295 4.295 8 C 0.271 3.729 9 O -0.360 6.360 10 C -0.116 4.116 11 N -0.254 5.254 12 C -0.069 4.069 13 C -0.148 4.148 14 C -0.138 4.138 15 C 0.036 3.964 16 H 0.012 0.988 17 C -0.572 4.572 18 H 0.065 0.935 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.779 3.221 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.196 1.196 25 C -0.061 4.061 26 C 0.026 3.974 27 C -0.158 4.158 28 N -0.097 5.097 29 H 0.283 0.717 30 H 0.154 0.846 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.189 0.811 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.055 0.945 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.745 -16.778 -7.293 29.189 hybrid contribution 0.541 -1.042 0.865 1.458 sum -22.204 -17.820 -6.428 29.187 Atomic orbital electron populations 1.23620 0.73647 1.06037 1.02900 1.86531 1.25816 1.31398 1.84245 1.19814 0.86859 0.82018 0.72516 1.90913 1.65876 1.36776 1.47872 1.18823 0.86791 0.88346 1.23078 1.21481 0.90641 0.98471 0.96162 1.20212 0.94690 0.93261 1.21327 1.23077 0.86913 0.92687 0.70174 1.90495 1.27069 1.79764 1.38675 1.22780 0.93380 0.88930 1.06510 1.62262 1.03680 1.56243 1.03180 1.22114 0.95087 0.98266 0.91482 1.21568 0.95775 0.99467 0.97941 1.21402 0.99585 0.97761 0.95035 1.18559 0.91063 0.93704 0.93117 0.98844 1.21472 1.04279 1.20007 1.11456 0.93507 1.25731 0.98768 0.95033 0.99094 1.70034 1.20718 1.25997 1.38757 0.85685 0.78033 0.78302 0.80056 1.19819 1.20732 1.19609 1.22202 0.94394 0.98660 0.90878 1.21468 0.86478 0.93773 0.95676 1.20743 0.91479 0.98722 1.04854 1.41629 1.04283 1.09798 1.54008 0.71739 0.84647 0.91730 0.91605 0.81113 0.85088 0.86484 0.94472 0.89577 0.91576 0.93009 0.96566 0.92527 0.93103 0.93641 0.93547 0.88548 0.90082 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 113.37 1.20 1.46 16 2 O -0.36 -5.15 10.58 -57.82 -0.61 -5.76 16 3 C 0.54 10.39 7.93 70.02 0.56 10.95 16 4 O -0.52 -12.88 16.65 19.52 0.33 -12.56 16 5 C -0.06 -1.16 7.02 39.95 0.28 -0.88 16 6 C -0.04 -0.87 10.08 22.63 0.23 -0.64 16 7 C -0.29 -6.62 6.11 -20.18 -0.12 -6.74 16 8 C 0.39 11.29 6.54 27.88 0.18 11.48 16 9 O -0.48 -17.16 10.07 -3.18 -0.03 -17.19 16 10 C 0.01 0.35 5.35 85.56 0.46 0.81 16 11 N -0.53 -19.98 4.86 -900.92 -4.38 -24.36 16 12 C 0.06 2.11 5.09 86.33 0.44 2.55 16 13 C -0.11 -4.54 6.09 30.65 0.19 -4.36 16 14 C -0.10 -5.15 5.02 30.67 0.15 -4.99 16 15 C 0.05 2.96 2.26 -11.49 -0.03 2.94 16 16 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 17 C -0.53 -31.38 8.56 25.60 0.22 -31.16 16 18 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 19 C 0.01 0.71 5.30 84.65 0.45 1.16 16 20 N -0.92 -55.31 11.35 21.44 0.24 -55.06 16 21 Si 0.95 45.53 29.54 68.60 2.03 47.55 16 22 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 25 C 0.07 3.02 4.20 86.32 0.36 3.38 16 26 C 0.15 2.83 7.21 42.31 0.31 3.14 16 27 C -0.10 -1.62 9.88 71.23 0.70 -0.91 16 28 N -0.50 -7.07 6.00 -171.53 -1.03 -8.10 16 29 H 0.44 3.32 8.96 -92.71 -0.83 2.49 16 30 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.17 3.04 8.05 -2.91 -0.02 3.02 16 34 H 0.13 2.82 8.06 -2.39 -0.02 2.81 16 35 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.04 1.44 6.00 -2.39 -0.01 1.42 16 37 H 0.09 2.55 8.06 -2.39 -0.02 2.53 16 38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 3.26 6.15 -2.39 -0.01 3.24 16 42 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 43 H 0.05 2.07 8.12 -2.39 -0.02 2.05 16 44 H 0.05 2.25 5.36 -2.38 -0.01 2.23 16 45 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.08 1.86 6.46 -2.39 -0.02 1.84 16 47 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -75.71 380.30 2.28 -73.43 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.16 Total: 13.88 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 5.57 Total: -11.82 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -5.16 Total: -87.52 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.32 Total: -35.51 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -75.71 2.28 -73.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878886335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.244 kcal (2) G-P(sol) polarization free energy of solvation -75.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.16 seconds