Wall clock time and date at job start Tue Mar 31 2020 20:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 119.99922 * 2 1 4 4 S 1.65595 * 120.00206 * 180.02562 * 2 1 3 5 5 O 1.42106 * 106.40334 * 331.34109 * 4 2 1 6 6 O 1.42098 * 106.40269 * 198.42273 * 4 2 1 7 7 N 1.65596 * 107.22034 * 84.88148 * 4 2 1 8 8 C 1.36935 * 120.00338 * 275.11244 * 7 4 2 9 9 H 1.08000 * 119.99581 * 33.98715 * 8 7 4 10 10 C 1.38815 * 120.00392 * 213.99446 * 8 7 4 11 11 N 1.31617 * 119.99856 * 22.38959 * 10 8 7 12 12 Si 1.86807 * 119.99936 * 202.39782 * 10 8 7 13 13 H 1.48499 * 109.46782 * 89.99671 * 12 10 8 14 14 H 1.48494 * 109.46544 * 209.99485 * 12 10 8 15 15 H 1.48498 * 109.46890 * 329.99374 * 12 10 8 16 16 C 1.46505 * 120.00262 * 95.10980 * 7 4 2 17 17 C 1.53003 * 109.47309 * 265.00347 * 16 7 4 18 18 H 1.09003 * 110.74878 * 51.52381 * 17 16 7 19 19 C 1.55303 * 111.02019 * 287.93114 * 17 16 7 20 20 C 1.54949 * 100.93858 * 207.59908 * 19 17 16 21 21 C 1.52998 * 110.30881 * 155.36090 * 20 19 17 22 22 C 1.53004 * 110.30741 * 277.42843 * 20 19 17 23 23 O 1.43644 * 105.13739 * 36.44092 * 20 19 17 24 24 C 1.43235 * 109.97395 * 335.57302 * 23 20 19 25 25 C 1.52993 * 109.83419 * 242.19784 * 24 23 20 26 26 C 1.52996 * 109.82837 * 121.22367 * 24 23 20 27 27 H 1.09003 * 109.47145 * 184.24167 * 1 2 3 28 28 H 1.09004 * 109.47025 * 304.24288 * 1 2 3 29 29 H 1.09001 * 109.47682 * 64.24130 * 1 2 3 30 30 H 1.09004 * 109.47777 * 270.00515 * 3 2 1 31 31 H 1.09002 * 109.47041 * 30.00041 * 3 2 1 32 32 H 1.08999 * 109.47634 * 150.00523 * 3 2 1 33 33 H 0.97000 * 119.99791 * 180.02562 * 11 10 8 34 34 H 1.08998 * 109.47403 * 144.99688 * 16 7 4 35 35 H 1.09006 * 109.46714 * 25.00195 * 16 7 4 36 36 H 1.09001 * 111.12494 * 325.51054 * 19 17 16 37 37 H 1.08993 * 111.12648 * 89.63385 * 19 17 16 38 38 H 1.09000 * 109.47652 * 59.99670 * 21 20 19 39 39 H 1.09001 * 109.47076 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.47243 * 299.99510 * 21 20 19 41 41 H 1.08997 * 109.47395 * 59.99699 * 22 20 19 42 42 H 1.08998 * 109.47201 * 180.02562 * 22 20 19 43 43 H 1.09007 * 109.46643 * 300.00114 * 22 20 19 44 44 H 1.08995 * 109.47505 * 178.13462 * 25 24 23 45 45 H 1.09000 * 109.47240 * 298.13487 * 25 24 23 46 46 H 1.09004 * 109.46997 * 58.12815 * 25 24 23 47 47 H 1.09003 * 109.47399 * 301.86740 * 26 24 23 48 48 H 1.08996 * 109.47500 * 61.87031 * 26 24 23 49 49 H 1.09008 * 109.47224 * 181.87000 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.4577 -2.3800 0.6527 6 8 3.6136 -1.1351 0.4303 7 7 2.4159 -1.9285 -1.5763 8 6 1.3951 -2.6352 -2.1538 9 1 0.3718 -2.4304 -1.8758 10 6 1.6755 -3.6149 -3.0965 11 7 2.8650 -4.1772 -3.1272 12 14 0.3644 -4.1349 -4.3214 13 1 0.4596 -3.2880 -5.5375 14 1 0.5700 -5.5581 -4.6919 15 1 -0.9782 -3.9719 -3.7084 16 6 3.6169 -1.6098 -2.3525 17 6 3.3803 -0.3289 -3.1553 18 1 3.0133 0.4691 -2.5098 19 6 2.3998 -0.5825 -4.3327 20 6 2.8618 0.5016 -5.3387 21 6 2.4941 0.0924 -6.7664 22 6 2.2279 1.8508 -4.9940 23 8 4.2891 0.5669 -5.1907 24 6 4.6676 0.1056 -3.8885 25 6 5.3490 1.2361 -3.1150 26 6 5.6194 -1.0855 -4.0162 27 1 -0.3633 -1.0249 0.0760 28 1 -0.3633 0.5783 0.8496 29 1 -0.3634 0.4466 -0.9255 30 1 2.3791 1.5835 -1.0277 31 1 1.6083 2.0283 0.5139 32 1 3.1499 1.1385 0.5137 33 1 3.0611 -4.8615 -3.7862 34 1 3.8370 -2.4308 -3.0348 35 1 4.4589 -1.4641 -1.6757 36 1 2.5316 -1.5828 -4.7451 37 1 1.3668 -0.4197 -4.0256 38 1 1.4134 -0.0269 -6.8433 39 1 2.8246 0.8639 -7.4620 40 1 2.9821 -0.8510 -7.0111 41 1 2.5280 2.1470 -3.9889 42 1 2.5613 2.6024 -5.7095 43 1 1.1422 1.7638 -5.0381 44 1 5.6046 0.8889 -2.1140 45 1 6.2566 1.5382 -3.6376 46 1 4.6713 2.0868 -3.0426 47 1 5.1332 -1.8801 -4.5822 48 1 6.5257 -0.7724 -4.5344 49 1 5.8773 -1.4526 -3.0227 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882990579.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:23 Heat of formation + Delta-G solvation = -117.094239 kcal Electronic energy + Delta-G solvation = -31244.649228 eV Core-core repulsion = 27333.987769 eV Total energy + Delta-G solvation = -3910.661459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.01761 -36.24928 -35.89543 -35.54039 -34.71927 -34.05793 -32.26141 -31.09994 -29.05243 -27.72364 -27.48605 -26.67217 -25.92300 -24.15181 -23.54611 -21.89665 -20.05048 -18.68164 -18.47829 -17.53128 -16.65023 -16.33678 -15.55281 -15.31225 -15.05244 -14.66411 -14.37189 -14.17151 -14.02506 -13.82483 -13.43219 -13.02582 -12.82710 -12.63839 -12.35136 -12.23265 -12.20325 -12.02958 -11.95415 -11.87733 -11.69961 -11.54273 -11.43563 -11.32133 -11.19934 -11.12895 -11.06739 -10.87526 -10.85880 -10.79928 -10.67151 -10.48188 -10.20643 -9.94107 -9.84735 -9.61556 -9.08634 -9.07905 -8.56127 -7.72139 -6.25019 -3.95842 1.63536 3.16406 3.26392 3.26989 3.88831 4.10378 4.24693 4.56877 4.96113 5.04433 5.21369 5.24263 5.29912 5.32184 5.40136 5.43289 5.51228 5.66543 5.71944 5.76675 5.79801 5.86346 5.89700 5.94041 5.98778 6.01631 6.04871 6.12184 6.12520 6.19416 6.22664 6.33277 6.35515 6.38836 6.42819 6.48528 6.57954 6.69287 6.72811 6.77109 6.94853 7.04638 7.21962 7.40459 7.63357 7.80125 8.41197 9.01857 9.38751 10.76761 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009929 B = 0.007554 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.404412 B = 3705.793630 C = 4889.089239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.016 6.016 3 C 0.091 3.909 4 S 2.742 3.258 5 O -0.989 6.989 6 O -1.013 7.013 7 N -0.847 5.847 8 C -0.292 4.292 9 H 0.086 0.914 10 C 0.046 3.954 11 N -0.859 5.859 12 Si 0.900 3.100 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.270 1.270 16 C 0.122 3.878 17 C -0.121 4.121 18 H 0.069 0.931 19 C -0.115 4.115 20 C 0.092 3.908 21 C -0.139 4.139 22 C -0.155 4.155 23 O -0.369 6.369 24 C 0.108 3.892 25 C -0.152 4.152 26 C -0.152 4.152 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.266 0.734 34 H 0.128 0.872 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.065 0.935 48 H 0.050 0.950 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 10.910 -3.145 11.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.855 5.855 3 C -0.055 4.055 4 S 2.757 3.243 5 O -0.972 6.972 6 O -0.997 6.997 7 N -0.680 5.680 8 C -0.426 4.426 9 H 0.104 0.896 10 C -0.160 4.160 11 N -0.499 5.499 12 Si 0.727 3.273 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.195 1.195 16 C -0.005 4.005 17 C -0.141 4.141 18 H 0.087 0.913 19 C -0.153 4.153 20 C 0.053 3.947 21 C -0.196 4.196 22 C -0.213 4.213 23 O -0.289 6.289 24 C 0.068 3.932 25 C -0.209 4.209 26 C -0.209 4.209 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.069 0.931 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.195 10.445 -2.493 10.741 hybrid contribution -0.986 -0.012 -0.831 1.289 sum -1.181 10.434 -3.325 11.014 Atomic orbital electron populations 1.21367 0.79451 1.03418 1.00662 1.57933 1.14809 1.22218 1.90526 1.21398 0.96947 0.85889 1.01242 1.03663 0.72519 0.72884 0.75237 1.93478 1.69865 1.59164 1.74733 1.93431 1.38299 1.85449 1.82485 1.52906 1.24778 1.65096 1.25245 1.18885 0.86517 1.15015 1.22141 0.89619 1.25160 0.96619 0.94250 1.00003 1.69921 1.21693 1.23832 1.34422 0.86364 0.81643 0.77968 0.81341 1.20133 1.21119 1.19472 1.21571 0.86306 0.96496 0.96134 1.23190 0.93720 0.99779 0.97455 0.91285 1.23155 0.99957 0.98485 0.93702 1.22391 0.81523 0.94906 0.95919 1.21805 1.01183 1.01637 0.94989 1.22153 1.00394 0.97051 1.01667 1.88378 1.21405 1.86114 1.33036 1.21997 0.94890 0.93325 0.83022 1.22120 1.00544 0.98150 1.00124 1.22121 0.98555 0.97556 1.02698 0.89868 0.93124 0.92994 0.93410 0.91901 0.90558 0.92367 0.85498 0.92199 0.89886 0.90159 0.91700 0.92691 0.92061 0.92428 0.92740 0.92042 0.91364 0.92545 0.92753 0.91576 0.93119 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.47 10.68 59.85 0.64 2.11 16 2 N -1.02 -17.81 3.64 -129.20 -0.47 -18.29 16 3 C 0.09 1.31 10.60 59.84 0.63 1.95 16 4 S 2.74 61.47 6.05 -107.50 -0.65 60.82 16 5 O -0.99 -25.32 16.13 -57.17 -0.92 -26.24 16 6 O -1.01 -23.91 15.13 -57.17 -0.87 -24.78 16 7 N -0.85 -19.40 2.90 -59.90 -0.17 -19.58 16 8 C -0.29 -7.04 8.01 -15.06 -0.12 -7.16 16 9 H 0.09 2.03 7.92 -52.49 -0.42 1.62 16 10 C 0.05 1.13 4.26 -17.43 -0.07 1.05 16 11 N -0.86 -21.84 11.22 55.49 0.62 -21.22 16 12 Si 0.90 19.13 29.61 -169.99 -5.03 14.10 16 13 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 14 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 C 0.12 2.60 3.52 -4.04 -0.01 2.59 16 17 C -0.12 -2.17 2.28 -88.67 -0.20 -2.38 16 18 H 0.07 1.19 5.82 -51.93 -0.30 0.89 16 19 C -0.12 -2.06 4.42 -24.48 -0.11 -2.17 16 20 C 0.09 1.43 1.21 -89.59 -0.11 1.32 16 21 C -0.14 -1.97 8.95 37.16 0.33 -1.63 16 22 C -0.16 -2.08 8.84 37.16 0.33 -1.76 16 23 O -0.37 -6.26 10.05 -35.23 -0.35 -6.61 16 24 C 0.11 1.79 1.21 -89.90 -0.11 1.68 16 25 C -0.15 -2.21 8.75 37.15 0.32 -1.88 16 26 C -0.15 -2.53 7.68 37.16 0.29 -2.25 16 27 H 0.08 1.40 6.99 -51.93 -0.36 1.04 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.64 6.52 -51.93 -0.34 0.30 16 31 H 0.06 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.08 1.15 7.00 -51.93 -0.36 0.78 16 33 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 34 H 0.13 2.93 3.99 -51.93 -0.21 2.73 16 35 H 0.06 1.29 6.00 -51.93 -0.31 0.98 16 36 H 0.08 1.67 7.23 -51.93 -0.38 1.30 16 37 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.78 7.32 -51.93 -0.38 0.40 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.74 7.93 -51.93 -0.41 0.33 16 47 H 0.07 1.19 7.59 -51.93 -0.39 0.80 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.07 1.22 6.53 -51.92 -0.34 0.88 16 LS Contribution 383.13 15.07 5.77 5.77 Total: -1.00 -29.25 383.13 -8.67 -37.92 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.40 Total: 6.63 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 1.81 Total: -8.53 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.02 Total: -59.08 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -2.14 Total: -57.63 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 16 Polarization: 61.47 SS G_CDS: -0.65 Total: 60.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.25 -8.67 -37.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882990579.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.177 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds