Wall clock time and date at job start Tue Mar 31 2020 20:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38118 * 126.29584 * 2 1 4 4 C 1.47289 * 126.42874 * 0.04041 * 3 2 1 5 5 O 1.21525 * 119.99777 * 359.97438 * 4 3 2 6 6 O 1.34751 * 120.00107 * 180.02562 * 4 3 2 7 7 C 1.45202 * 116.99946 * 179.97438 * 6 4 3 8 8 H 1.09002 * 113.49331 * 15.97298 * 7 6 4 9 9 C 1.50660 * 114.50202 * 241.88244 * 7 6 4 10 10 H 1.08995 * 114.94028 * 319.87813 * 9 7 6 11 11 C 1.52678 * 126.48425 * 115.68135 * 9 7 6 12 12 C 1.56144 * 100.01212 * 126.37158 * 11 9 7 13 13 O 1.44494 * 105.52038 * 337.07773 * 12 11 9 14 14 C 1.38966 * 107.38610 * 347.04879 * 13 12 11 15 15 H 1.08998 * 109.74867 * 284.54211 * 14 13 12 16 16 C 1.48999 * 135.73003 * 130.84555 * 14 13 12 17 17 C 1.52999 * 114.57441 * 108.77925 * 16 14 13 18 18 C 1.53002 * 114.61606 * 334.93534 * 16 14 13 19 19 C 1.41342 * 107.14763 * 180.02562 * 3 2 1 20 20 N 1.30427 * 108.00961 * 0.26245 * 19 3 2 21 21 N 1.34224 * 126.29480 * 180.02562 * 2 1 3 22 22 C 1.46501 * 125.73961 * 0.02562 * 21 2 1 23 23 C 1.50693 * 109.47342 * 89.99943 * 22 21 2 24 24 H 1.07996 * 120.00197 * 359.97438 * 23 22 21 25 25 C 1.37883 * 120.00210 * 179.97438 * 23 22 21 26 26 N 1.31517 * 119.99583 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00186 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46698 * 60.00231 * 27 25 23 29 29 H 1.48502 * 109.46868 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47320 * 300.00287 * 27 25 23 31 31 H 1.08998 * 109.46926 * 89.97343 * 1 2 3 32 32 H 1.08994 * 109.47334 * 209.97804 * 1 2 3 33 33 H 1.09004 * 109.47123 * 329.97648 * 1 2 3 34 34 H 1.09005 * 111.29912 * 244.06519 * 11 9 7 35 35 H 1.09004 * 111.29835 * 8.67910 * 11 9 7 36 36 H 1.08994 * 110.19656 * 95.79914 * 12 11 9 37 37 H 1.09003 * 110.19867 * 217.59708 * 12 11 9 38 38 H 1.09002 * 109.46930 * 170.88377 * 17 16 14 39 39 H 1.08996 * 109.47508 * 290.88426 * 17 16 14 40 40 H 1.09000 * 109.47022 * 50.89018 * 17 16 14 41 41 H 1.09001 * 109.47273 * 339.02670 * 18 16 14 42 42 H 1.09005 * 109.46775 * 99.02350 * 18 16 14 43 43 H 1.09001 * 109.46899 * 219.02294 * 18 16 14 44 44 H 1.07999 * 125.99719 * 179.97438 * 19 3 2 45 45 H 1.09003 * 109.46689 * 209.99790 * 22 21 2 46 46 H 1.09001 * 109.47582 * 329.99312 * 22 21 2 47 47 H 0.97000 * 119.99963 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8873 2.5196 0.0008 5 8 0.7018 2.7873 0.0012 6 8 2.8015 3.5096 0.0002 7 6 2.2983 4.8716 0.0005 8 1 1.2464 4.9461 0.2763 9 6 2.6870 5.6816 -1.2089 10 1 3.7094 5.5295 -1.5547 11 6 1.7404 6.2495 -2.2636 12 6 2.1707 7.7502 -2.2347 13 8 2.7775 7.9535 -0.9392 14 6 2.4680 6.8471 -0.1574 15 1 1.4295 6.9053 0.1684 16 6 3.2309 5.9080 0.7122 17 6 2.9707 6.0746 2.2106 18 6 4.7141 5.7761 0.3604 19 6 3.6599 0.6496 -0.0006 20 7 3.6340 -0.6544 -0.0066 21 7 2.3016 -1.0818 -0.0005 22 6 1.8497 -2.4754 -0.0016 23 6 1.6953 -2.9522 -1.4228 24 1 1.9116 -2.2840 -2.2431 25 6 1.2777 -4.2418 -1.6758 26 7 1.0138 -5.0554 -0.6768 27 14 1.0856 -4.8326 -3.4374 28 1 2.3915 -4.7345 -4.1375 29 1 0.6288 -6.2457 -3.4385 30 1 0.0844 -3.9877 -4.1365 31 1 -0.3633 0.0005 -1.0277 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3633 0.8898 0.5142 34 1 1.9238 5.8039 -3.2414 35 1 0.6986 6.1305 -1.9659 36 1 2.8976 7.9486 -3.0222 37 1 1.2995 8.3940 -2.3563 38 1 3.4372 5.2529 2.7540 39 1 3.3928 7.0205 2.5498 40 1 1.8965 6.0689 2.3956 41 1 4.8731 6.0955 -0.6696 42 1 5.3035 6.4025 1.0301 43 1 5.0224 4.7363 0.4701 44 1 4.5461 1.2668 -0.0012 45 1 2.5841 -3.0958 0.5120 46 1 0.8909 -2.5470 0.5119 47 1 0.7204 -5.9626 -0.8547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892716108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:49 Heat of formation + Delta-G solvation = 23.675129 kcal Electronic energy + Delta-G solvation = -29218.298654 eV Core-core repulsion = 25178.297461 eV Total energy + Delta-G solvation = -4040.001192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.49327 -40.86728 -39.35916 -37.17681 -35.45489 -33.94415 -32.22384 -32.16404 -31.27545 -29.36060 -28.02872 -27.78112 -26.80246 -25.08735 -23.72327 -23.25996 -22.21323 -20.83576 -20.24216 -19.40012 -18.89118 -17.66943 -16.99009 -16.80577 -16.29849 -15.85159 -15.43536 -15.28367 -15.06787 -14.65618 -14.53746 -14.49938 -14.12633 -13.84100 -13.37490 -13.09992 -12.75009 -12.56700 -12.50034 -12.32637 -12.25192 -12.15439 -11.91713 -11.86340 -11.78422 -11.69789 -11.57061 -11.37613 -11.17888 -10.94945 -10.90672 -10.46766 -10.34503 -10.01096 -10.00600 -9.96980 -9.85199 -9.47902 -8.74582 -8.67837 -8.10060 -6.37671 -4.45950 1.88195 2.45405 2.68742 2.95163 3.17410 3.21722 3.24732 3.39796 3.60113 3.76299 4.05971 4.20891 4.29723 4.40879 4.65324 4.71929 4.84616 4.96692 4.97601 5.01071 5.11637 5.14351 5.18844 5.27329 5.41348 5.44487 5.45501 5.49070 5.59688 5.60539 5.67128 5.71901 5.75236 5.86068 5.94244 5.98723 6.01098 6.12123 6.33452 6.37483 6.67701 6.72748 6.79902 6.84970 7.10603 7.49410 7.68668 7.72223 8.15328 8.32258 8.58991 9.21185 10.70550 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.002530 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.099320 B =11063.975066 C =11546.233541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.172 3.828 3 C -0.319 4.319 4 C 0.551 3.449 5 O -0.531 6.531 6 O -0.335 6.335 7 C 0.089 3.911 8 H 0.124 0.876 9 C -0.193 4.193 10 H 0.134 0.866 11 C -0.146 4.146 12 C 0.055 3.945 13 O -0.355 6.355 14 C 0.035 3.965 15 H 0.081 0.919 16 C -0.038 4.038 17 C -0.140 4.140 18 C -0.132 4.132 19 C 0.081 3.919 20 N -0.297 5.297 21 N -0.310 5.310 22 C 0.251 3.749 23 C -0.543 4.543 24 H 0.065 0.935 25 C 0.068 3.932 26 N -0.889 5.889 27 Si 0.909 3.091 28 H -0.273 1.273 29 H -0.283 1.283 30 H -0.273 1.273 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.184 0.816 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 22.446 1.781 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.034 3.966 3 C -0.332 4.332 4 C 0.399 3.601 5 O -0.422 6.422 6 O -0.252 6.252 7 C 0.033 3.967 8 H 0.141 0.859 9 C -0.211 4.211 10 H 0.151 0.849 11 C -0.183 4.183 12 C -0.021 4.021 13 O -0.274 6.274 14 C -0.024 4.024 15 H 0.098 0.902 16 C -0.038 4.038 17 C -0.197 4.197 18 C -0.188 4.188 19 C -0.107 4.107 20 N -0.116 5.116 21 N -0.086 5.086 22 C 0.134 3.866 23 C -0.581 4.581 24 H 0.083 0.917 25 C -0.136 4.136 26 N -0.526 5.526 27 Si 0.735 3.265 28 H -0.198 1.198 29 H -0.208 1.208 30 H -0.198 1.198 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.201 0.799 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.467 21.271 1.883 21.496 hybrid contribution -0.817 0.192 -1.170 1.440 sum 1.650 21.463 0.713 21.538 Atomic orbital electron populations 1.20619 0.86586 1.04008 1.04161 1.21455 0.94964 0.86471 0.93694 1.18826 0.93768 0.89282 1.31346 1.20093 0.83517 0.85082 0.71399 1.90734 1.18002 1.84407 1.49081 1.86626 1.39301 1.14991 1.84282 1.24413 0.99004 0.77501 0.95750 0.85892 1.25226 1.02514 0.98776 0.94576 0.84888 1.22690 0.99912 0.95162 1.00540 1.24019 0.97747 0.95490 0.84864 1.87617 1.75933 1.40446 1.23387 1.23268 0.98476 0.83982 0.96699 0.90180 1.21964 0.96298 0.90910 0.94645 1.21783 1.02143 1.02533 0.93287 1.21727 0.91782 1.03349 1.01975 1.23910 0.96618 0.92125 0.98032 1.77216 0.98256 1.12347 1.23765 1.49431 1.02623 1.08307 1.48276 1.19900 0.96514 0.70644 0.99558 1.21201 1.47769 0.98229 0.90906 0.91660 1.24921 0.94353 0.95938 0.98362 1.69901 1.44269 1.07220 1.31241 0.86368 0.78921 0.77773 0.83405 1.19849 1.20829 1.19836 0.89546 0.90461 0.88887 0.89876 0.90170 0.90008 0.91141 0.91330 0.91643 0.92129 0.91353 0.91772 0.90566 0.79863 0.92303 0.92442 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 9.57 36.01 0.34 -1.31 16 2 C 0.17 3.42 7.01 -81.59 -0.57 2.85 16 3 C -0.32 -5.87 6.13 -105.08 -0.64 -6.52 16 4 C 0.55 9.25 7.95 34.41 0.27 9.52 16 5 O -0.53 -9.50 14.05 -19.29 -0.27 -9.77 16 6 O -0.34 -4.73 9.60 -40.63 -0.39 -5.12 16 7 C 0.09 1.03 3.64 -40.31 -0.15 0.88 16 8 H 0.12 1.50 6.48 -51.93 -0.34 1.16 16 9 C -0.19 -1.99 4.17 -99.43 -0.41 -2.40 16 10 H 0.13 1.36 5.52 -51.93 -0.29 1.07 16 11 C -0.15 -1.30 6.82 -25.21 -0.17 -1.47 16 12 C 0.05 0.44 7.86 38.84 0.31 0.75 16 13 O -0.36 -3.78 11.24 -29.81 -0.34 -4.12 16 14 C 0.03 0.34 4.13 -39.98 -0.16 0.18 16 15 H 0.08 0.77 7.36 -51.93 -0.38 0.39 16 16 C -0.04 -0.36 1.54 -165.07 -0.25 -0.62 16 17 C -0.14 -1.19 9.25 37.16 0.34 -0.85 16 18 C -0.13 -1.17 8.68 37.16 0.32 -0.84 16 19 C 0.08 1.44 11.87 -16.97 -0.20 1.24 16 20 N -0.30 -6.36 12.50 30.87 0.39 -5.98 16 21 N -0.31 -6.90 3.56 -57.76 -0.21 -7.11 16 22 C 0.25 6.11 5.97 -5.20 -0.03 6.08 16 23 C -0.54 -14.39 9.39 -34.44 -0.32 -14.71 16 24 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 25 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 26 N -0.89 -24.23 13.29 55.43 0.74 -23.49 16 27 Si 0.91 20.53 29.54 -169.99 -5.02 15.50 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.08 1.29 7.05 -51.93 -0.37 0.93 16 33 H 0.09 1.50 6.50 -51.93 -0.34 1.16 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 41 H 0.07 0.60 5.95 -51.93 -0.31 0.29 16 42 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 43 H 0.08 0.70 7.75 -51.93 -0.40 0.30 16 44 H 0.18 2.56 8.06 -52.49 -0.42 2.14 16 45 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 46 H 0.06 1.38 7.01 -51.93 -0.36 1.02 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -29.63 383.64 -7.73 -37.36 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.98 Total: 2.43 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.43 Total: -5.49 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.92 Total: -36.57 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -1.00 Total: -19.01 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.63 -7.73 -37.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892716108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.032 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds