Wall clock time and date at job start Tue Mar 31 2020 20:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38118 * 126.29584 * 2 1 4 4 C 1.47289 * 126.42874 * 0.04041 * 3 2 1 5 5 O 1.21525 * 119.99777 * 359.97438 * 4 3 2 6 6 O 1.34751 * 120.00107 * 180.02562 * 4 3 2 7 7 C 1.45202 * 116.99946 * 179.97438 * 6 4 3 8 8 H 1.09002 * 113.49331 * 15.97298 * 7 6 4 9 9 C 1.50660 * 114.50202 * 241.88244 * 7 6 4 10 10 H 1.08995 * 114.94028 * 319.87813 * 9 7 6 11 11 C 1.52678 * 126.48425 * 115.68135 * 9 7 6 12 12 C 1.56144 * 100.01212 * 126.37158 * 11 9 7 13 13 O 1.44494 * 105.52038 * 337.07773 * 12 11 9 14 14 C 1.38966 * 107.38610 * 347.04879 * 13 12 11 15 15 H 1.08998 * 109.74867 * 284.54211 * 14 13 12 16 16 C 1.48999 * 135.73003 * 130.84555 * 14 13 12 17 17 C 1.52999 * 114.57441 * 108.77925 * 16 14 13 18 18 C 1.53002 * 114.61606 * 334.93534 * 16 14 13 19 19 C 1.41342 * 107.14763 * 180.02562 * 3 2 1 20 20 N 1.30427 * 108.00961 * 0.26245 * 19 3 2 21 21 N 1.34224 * 126.29480 * 180.02562 * 2 1 3 22 22 C 1.46501 * 125.73961 * 0.02562 * 21 2 1 23 23 C 1.50693 * 109.47342 * 89.99943 * 22 21 2 24 24 H 1.07996 * 120.00197 * 359.97438 * 23 22 21 25 25 C 1.37883 * 120.00210 * 179.97438 * 23 22 21 26 26 N 1.31517 * 119.99583 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00186 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46698 * 60.00231 * 27 25 23 29 29 H 1.48502 * 109.46868 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47320 * 300.00287 * 27 25 23 31 31 H 1.08998 * 109.46926 * 89.97343 * 1 2 3 32 32 H 1.08994 * 109.47334 * 209.97804 * 1 2 3 33 33 H 1.09004 * 109.47123 * 329.97648 * 1 2 3 34 34 H 1.09005 * 111.29912 * 244.06519 * 11 9 7 35 35 H 1.09004 * 111.29835 * 8.67910 * 11 9 7 36 36 H 1.08994 * 110.19656 * 95.79914 * 12 11 9 37 37 H 1.09003 * 110.19867 * 217.59708 * 12 11 9 38 38 H 1.09002 * 109.46930 * 170.88377 * 17 16 14 39 39 H 1.08996 * 109.47508 * 290.88426 * 17 16 14 40 40 H 1.09000 * 109.47022 * 50.89018 * 17 16 14 41 41 H 1.09001 * 109.47273 * 339.02670 * 18 16 14 42 42 H 1.09005 * 109.46775 * 99.02350 * 18 16 14 43 43 H 1.09001 * 109.46899 * 219.02294 * 18 16 14 44 44 H 1.07999 * 125.99719 * 179.97438 * 19 3 2 45 45 H 1.09003 * 109.46689 * 209.99790 * 22 21 2 46 46 H 1.09001 * 109.47582 * 329.99312 * 22 21 2 47 47 H 0.97000 * 119.99963 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1132 0.0000 4 6 1.8873 2.5196 0.0008 5 8 0.7018 2.7873 0.0012 6 8 2.8015 3.5096 0.0002 7 6 2.2983 4.8716 0.0005 8 1 1.2464 4.9461 0.2763 9 6 2.6870 5.6816 -1.2089 10 1 3.7094 5.5295 -1.5547 11 6 1.7404 6.2495 -2.2636 12 6 2.1707 7.7502 -2.2347 13 8 2.7775 7.9535 -0.9392 14 6 2.4680 6.8471 -0.1574 15 1 1.4295 6.9053 0.1684 16 6 3.2309 5.9080 0.7122 17 6 2.9707 6.0746 2.2106 18 6 4.7141 5.7761 0.3604 19 6 3.6599 0.6496 -0.0006 20 7 3.6340 -0.6544 -0.0066 21 7 2.3016 -1.0818 -0.0005 22 6 1.8497 -2.4754 -0.0016 23 6 1.6953 -2.9522 -1.4228 24 1 1.9116 -2.2840 -2.2431 25 6 1.2777 -4.2418 -1.6758 26 7 1.0138 -5.0554 -0.6768 27 14 1.0856 -4.8326 -3.4374 28 1 2.3915 -4.7345 -4.1375 29 1 0.6288 -6.2457 -3.4385 30 1 0.0844 -3.9877 -4.1365 31 1 -0.3633 0.0005 -1.0277 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3633 0.8898 0.5142 34 1 1.9238 5.8039 -3.2414 35 1 0.6986 6.1305 -1.9659 36 1 2.8976 7.9486 -3.0222 37 1 1.2995 8.3940 -2.3563 38 1 3.4372 5.2529 2.7540 39 1 3.3928 7.0205 2.5498 40 1 1.8965 6.0689 2.3956 41 1 4.8731 6.0955 -0.6696 42 1 5.3035 6.4025 1.0301 43 1 5.0224 4.7363 0.4701 44 1 4.5461 1.2668 -0.0012 45 1 2.5841 -3.0958 0.5120 46 1 0.8909 -2.5470 0.5119 47 1 0.7204 -5.9626 -0.8547 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892716108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:43 Heat of formation + Delta-G solvation = 8.235982 kcal Electronic energy + Delta-G solvation = -29218.968145 eV Core-core repulsion = 25178.297461 eV Total energy + Delta-G solvation = -4040.670684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.60 seconds Orbital eigenvalues (eV) -43.30675 -42.38338 -40.60733 -38.08644 -36.57922 -35.82902 -33.89882 -32.97103 -32.83576 -30.11040 -29.44598 -28.71774 -28.38984 -26.16888 -25.27807 -24.27830 -23.44875 -21.88685 -21.43535 -20.54578 -20.05091 -18.98103 -18.77241 -18.07492 -17.24017 -17.03252 -16.75344 -16.45197 -16.17660 -16.01963 -15.85429 -15.45754 -15.23432 -14.99982 -14.64102 -14.33718 -14.18352 -13.81953 -13.72686 -13.61555 -13.27603 -13.23718 -13.14935 -13.06840 -12.98259 -12.78077 -12.69562 -12.51950 -12.42604 -12.31575 -12.17116 -11.89598 -11.85676 -11.71007 -11.29947 -10.90791 -10.76323 -10.68546 -10.33561 -10.26596 -9.66243 -8.38801 -6.55130 0.42671 1.18954 1.36453 1.38869 1.39869 1.48959 1.74878 2.12298 2.22986 2.32369 2.93888 2.95395 3.21947 3.52380 3.62269 3.66016 3.78193 3.90523 3.97872 4.05993 4.11469 4.17836 4.26230 4.32986 4.39391 4.47643 4.53584 4.60576 4.72777 4.76911 4.79485 4.81433 4.87132 4.92274 4.92641 4.99118 5.01960 5.08151 5.10674 5.14884 5.31004 5.39886 5.47655 5.50287 5.61616 5.73067 5.96133 6.00989 6.52817 6.72694 6.90636 7.16047 8.69085 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.002530 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.099320 B =11063.975066 C =11546.233541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.160 3.840 3 C -0.321 4.321 4 C 0.558 3.442 5 O -0.544 6.544 6 O -0.329 6.329 7 C 0.075 3.925 8 H 0.117 0.883 9 C -0.198 4.198 10 H 0.136 0.864 11 C -0.146 4.146 12 C 0.055 3.945 13 O -0.371 6.371 14 C 0.040 3.960 15 H 0.081 0.919 16 C -0.031 4.031 17 C -0.141 4.141 18 C -0.131 4.131 19 C 0.098 3.902 20 N -0.335 5.335 21 N -0.333 5.333 22 C 0.266 3.734 23 C -0.558 4.558 24 H 0.053 0.947 25 C 0.026 3.974 26 N -0.916 5.916 27 Si 0.970 3.030 28 H -0.274 1.274 29 H -0.273 1.273 30 H -0.266 1.266 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.224 0.776 45 H 0.034 0.966 46 H 0.056 0.944 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 24.300 0.961 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.023 3.977 3 C -0.334 4.334 4 C 0.406 3.594 5 O -0.436 6.436 6 O -0.246 6.246 7 C 0.020 3.980 8 H 0.135 0.865 9 C -0.216 4.216 10 H 0.153 0.847 11 C -0.183 4.183 12 C -0.020 4.020 13 O -0.290 6.290 14 C -0.019 4.019 15 H 0.099 0.901 16 C -0.031 4.031 17 C -0.198 4.198 18 C -0.188 4.188 19 C -0.089 4.089 20 N -0.154 5.154 21 N -0.110 5.110 22 C 0.148 3.852 23 C -0.596 4.596 24 H 0.071 0.929 25 C -0.176 4.176 26 N -0.553 5.553 27 Si 0.794 3.206 28 H -0.199 1.199 29 H -0.198 1.198 30 H -0.190 1.190 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.240 0.760 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.733 23.156 1.068 23.341 hybrid contribution -0.864 -0.221 -0.891 1.260 sum 1.869 22.936 0.177 23.012 Atomic orbital electron populations 1.20648 0.85200 1.04569 1.04408 1.21952 0.96064 0.86367 0.93273 1.19053 0.93814 0.90023 1.30538 1.19794 0.83525 0.84993 0.71133 1.90726 1.18610 1.84648 1.49614 1.86599 1.38521 1.15726 1.83708 1.24736 0.99329 0.76243 0.97682 0.86546 1.25276 1.02945 0.98317 0.95054 0.84650 1.22721 0.99461 0.95749 1.00399 1.24156 0.98663 0.95011 0.84209 1.87595 1.76383 1.40673 1.24343 1.23209 0.98553 0.83658 0.96501 0.90108 1.21982 0.96368 0.89540 0.95205 1.21809 1.02351 1.03194 0.92443 1.21742 0.91275 1.03421 1.02350 1.24535 0.97786 0.91231 0.95373 1.77170 0.98200 1.14193 1.25848 1.49181 1.03394 1.07894 1.50486 1.19445 0.95555 0.71925 0.98282 1.21364 1.48183 0.98569 0.91529 0.92902 1.25707 0.93767 0.95892 1.02221 1.69982 1.44648 1.07607 1.33100 0.85419 0.78826 0.77704 0.78674 1.19915 1.19802 1.19047 0.89343 0.90410 0.87710 0.89329 0.90475 0.88616 0.89735 0.91341 0.90418 0.92078 0.91318 0.90545 0.90884 0.76009 0.94810 0.92668 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.11 9.57 71.24 0.68 -2.43 16 2 C 0.16 6.38 7.01 42.17 0.30 6.68 16 3 C -0.32 -11.56 6.13 -20.16 -0.12 -11.68 16 4 C 0.56 18.04 7.95 70.20 0.56 18.60 16 5 O -0.54 -18.90 14.05 19.75 0.28 -18.62 16 6 O -0.33 -8.75 9.60 -56.62 -0.54 -9.30 16 7 C 0.07 1.63 3.64 21.79 0.08 1.71 16 8 H 0.12 2.72 6.48 -2.39 -0.02 2.70 16 9 C -0.20 -3.74 4.17 -16.50 -0.07 -3.81 16 10 H 0.14 2.51 5.52 -2.39 -0.01 2.49 16 11 C -0.15 -2.36 6.82 31.58 0.22 -2.14 16 12 C 0.05 0.77 7.86 73.07 0.57 1.35 16 13 O -0.37 -7.13 11.24 -129.59 -1.46 -8.59 16 14 C 0.04 0.72 4.13 22.01 0.09 0.81 16 15 H 0.08 1.44 7.36 -2.39 -0.02 1.42 16 16 C -0.03 -0.53 1.54 -59.02 -0.09 -0.62 16 17 C -0.14 -2.13 9.25 71.98 0.67 -1.47 16 18 C -0.13 -2.05 8.68 71.98 0.62 -1.42 16 19 C 0.10 3.40 11.87 85.67 1.02 4.42 16 20 N -0.34 -14.44 12.50 -56.25 -0.70 -15.14 16 21 N -0.33 -15.11 3.56 -336.66 -1.20 -16.31 16 22 C 0.27 13.42 5.97 85.63 0.51 13.93 16 23 C -0.56 -30.18 9.39 25.60 0.24 -29.93 16 24 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 25 C 0.03 1.37 5.46 84.66 0.46 1.83 16 26 N -0.92 -50.38 13.29 21.45 0.28 -50.10 16 27 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 29 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 30 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 31 H 0.09 2.99 8.14 -2.39 -0.02 2.98 16 32 H 0.08 2.63 7.05 -2.39 -0.02 2.62 16 33 H 0.10 3.33 6.50 -2.39 -0.02 3.31 16 34 H 0.09 1.32 8.14 -2.38 -0.02 1.31 16 35 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 41 H 0.07 1.07 5.95 -2.39 -0.01 1.05 16 42 H 0.08 1.01 8.04 -2.38 -0.02 0.99 16 43 H 0.07 1.19 7.75 -2.39 -0.02 1.17 16 44 H 0.22 5.64 8.06 -2.91 -0.02 5.62 16 45 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.06 2.75 7.01 -2.39 -0.02 2.74 16 47 H 0.27 14.18 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -63.10 383.64 5.40 -57.70 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.98 Total: 20.62 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 5.73 Total: -4.19 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -1.62 Total: -81.55 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -1.72 Total: -36.51 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -63.10 5.40 -57.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892716108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.936 kcal (2) G-P(sol) polarization free energy of solvation -63.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.60 seconds