Wall clock time and date at job start Tue Mar 31 2020 20:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38116 * 126.29454 * 2 1 4 4 C 1.47289 * 126.42947 * 359.97438 * 3 2 1 5 5 O 1.21521 * 119.99711 * 0.02562 * 4 3 2 6 6 O 1.34753 * 119.99737 * 180.02562 * 4 3 2 7 7 C 1.45201 * 116.99523 * 179.97438 * 6 4 3 8 8 H 1.09008 * 112.79335 * 19.05036 * 7 6 4 9 9 C 1.53747 * 113.53549 * 248.00649 * 7 6 4 10 10 H 1.08997 * 116.36725 * 339.82867 * 9 7 6 11 11 C 1.54492 * 112.86020 * 117.10611 * 9 7 6 12 12 C 1.54460 * 104.13482 * 92.92969 * 11 9 7 13 13 O 1.44397 * 104.80538 * 335.87212 * 12 11 9 14 14 C 1.44249 * 105.40376 * 40.57295 * 13 12 11 15 15 H 1.08996 * 114.89414 * 89.85042 * 14 13 12 16 16 C 1.53578 * 113.40451 * 226.32319 * 14 13 12 17 17 C 1.53001 * 113.53673 * 325.84314 * 16 14 13 18 18 C 1.53008 * 113.59923 * 195.19860 * 16 14 13 19 19 C 1.41342 * 107.14647 * 180.02562 * 3 2 1 20 20 N 1.30434 * 108.01213 * 359.97438 * 19 3 2 21 21 N 1.34225 * 126.29066 * 180.02562 * 2 1 3 22 22 C 1.46497 * 125.75033 * 359.97104 * 21 2 1 23 23 C 1.50699 * 109.46911 * 270.03058 * 22 21 2 24 24 H 1.07998 * 120.00670 * 359.97438 * 23 22 21 25 25 C 1.37882 * 119.99964 * 179.97438 * 23 22 21 26 26 N 1.31510 * 120.00381 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 119.99813 * 359.97438 * 25 23 22 28 28 H 1.48492 * 109.47267 * 89.99990 * 27 25 23 29 29 H 1.48495 * 109.47063 * 210.00393 * 27 25 23 30 30 H 1.48507 * 109.46983 * 330.00182 * 27 25 23 31 31 H 1.08999 * 109.47289 * 89.97614 * 1 2 3 32 32 H 1.09005 * 109.47225 * 209.97467 * 1 2 3 33 33 H 1.08994 * 109.47238 * 329.97143 * 1 2 3 34 34 H 1.09004 * 110.49613 * 334.27140 * 11 9 7 35 35 H 1.08998 * 110.50071 * 211.59480 * 11 9 7 36 36 H 1.09003 * 110.37420 * 217.03983 * 12 11 9 37 37 H 1.08999 * 110.45922 * 94.74683 * 12 11 9 38 38 H 1.08997 * 109.47044 * 177.50283 * 17 16 14 39 39 H 1.09003 * 109.47238 * 297.49520 * 17 16 14 40 40 H 1.08996 * 109.47046 * 57.49965 * 17 16 14 41 41 H 1.09002 * 109.46381 * 302.46925 * 18 16 14 42 42 H 1.08993 * 109.47560 * 62.46706 * 18 16 14 43 43 H 1.08997 * 109.46720 * 182.47068 * 18 16 14 44 44 H 1.08000 * 125.99724 * 180.02562 * 19 3 2 45 45 H 1.09000 * 109.46857 * 30.02585 * 22 21 2 46 46 H 1.08993 * 109.47128 * 150.02802 * 22 21 2 47 47 H 0.96996 * 120.00584 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 -0.0005 5 8 0.7018 2.7872 -0.0006 6 8 2.8015 3.5095 -0.0010 7 6 2.2982 4.8715 -0.0021 8 1 1.2607 4.9387 0.3256 9 6 2.5810 5.6295 -1.3095 10 1 3.3828 5.2353 -1.9338 11 6 1.2921 6.0421 -2.0548 12 6 1.0024 7.4709 -1.5444 13 8 1.6545 7.5426 -0.2581 14 6 2.9142 6.8608 -0.4286 15 1 3.7401 7.4960 -0.7487 16 6 3.2297 5.8703 0.7019 17 6 2.7179 6.3226 2.0710 18 6 4.6926 5.4233 0.7341 19 6 3.6598 0.6496 -0.0006 20 7 3.6339 -0.6545 -0.0004 21 7 2.3015 -1.0819 -0.0005 22 6 1.8498 -2.4755 -0.0005 23 6 1.6948 -2.9533 1.4203 24 1 1.9114 -2.2858 2.2412 25 6 1.2762 -4.2426 1.6723 26 7 1.1405 -4.6595 2.9121 27 14 0.9007 -5.3970 0.2524 28 1 2.1328 -6.1352 -0.1245 29 1 -0.1489 -6.3633 0.6644 30 1 0.4197 -4.6099 -0.9114 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3634 -0.8902 0.5135 33 1 -0.3633 0.8897 0.5142 34 1 0.4718 5.3717 -1.7985 35 1 1.4593 6.0481 -3.1318 36 1 -0.0712 7.6242 -1.4346 37 1 1.4231 8.2112 -2.2249 38 1 2.9372 5.5546 2.8127 39 1 3.2111 7.2525 2.3542 40 1 1.6410 6.4830 2.0215 41 1 4.9560 4.9732 -0.2231 42 1 5.3324 6.2863 0.9180 43 1 4.8315 4.6918 1.5302 44 1 4.5460 1.2668 -0.0004 45 1 0.8911 -2.5466 -0.5144 46 1 2.5843 -3.0955 -0.5143 47 1 0.8464 -5.5667 3.0894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892716109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:56 Heat of formation + Delta-G solvation = -36.010141 kcal Electronic energy + Delta-G solvation = -29371.178935 eV Core-core repulsion = 25328.589595 eV Total energy + Delta-G solvation = -4042.589340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63327 -40.89655 -39.23846 -36.60528 -35.16963 -33.95212 -32.32582 -32.23238 -31.41298 -29.17997 -28.20912 -27.56877 -26.99743 -25.28316 -23.41699 -23.21103 -22.27469 -21.03615 -20.33841 -19.07461 -18.68570 -17.60703 -17.26293 -16.88210 -16.35432 -15.75795 -15.59551 -15.42553 -14.94214 -14.73074 -14.33429 -14.08763 -13.80785 -13.70655 -13.43007 -13.32558 -12.80937 -12.68412 -12.59180 -12.35051 -12.29754 -12.25489 -12.16700 -11.94163 -11.71585 -11.70580 -11.55264 -11.26809 -11.16698 -10.92566 -10.87977 -10.57878 -10.43268 -10.41884 -9.93352 -9.92842 -9.83722 -9.76493 -8.88734 -8.72854 -8.14287 -6.36490 -4.41981 1.85142 2.62057 2.78057 3.08799 3.13897 3.16079 3.30642 3.32162 3.60561 3.92388 4.12149 4.19032 4.30765 4.57205 4.76792 4.84620 4.85221 4.90518 4.94716 5.06218 5.07899 5.17908 5.21502 5.35313 5.38510 5.45475 5.52075 5.54866 5.60787 5.67224 5.73189 5.78903 5.83225 5.87398 5.91097 5.96268 6.12787 6.18388 6.22760 6.34374 6.38924 6.51575 6.55465 6.77158 6.98744 7.13262 7.45832 8.13123 8.15321 8.26563 8.66710 9.16855 10.75618 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.002553 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.023332 B =10965.527886 C =11287.933580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.176 3.824 3 C -0.315 4.315 4 C 0.550 3.450 5 O -0.529 6.529 6 O -0.338 6.338 7 C 0.085 3.915 8 H 0.115 0.885 9 C -0.147 4.147 10 H 0.119 0.881 11 C -0.151 4.151 12 C 0.047 3.953 13 O -0.357 6.357 14 C 0.059 3.941 15 H 0.101 0.899 16 C -0.072 4.072 17 C -0.134 4.134 18 C -0.122 4.122 19 C 0.083 3.917 20 N -0.294 5.294 21 N -0.311 5.311 22 C 0.224 3.776 23 C -0.548 4.548 24 H 0.083 0.917 25 C 0.082 3.918 26 N -0.881 5.881 27 Si 0.874 3.126 28 H -0.270 1.270 29 H -0.278 1.278 30 H -0.264 1.264 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.186 0.814 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 22.420 -9.623 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.039 3.961 3 C -0.328 4.328 4 C 0.397 3.603 5 O -0.420 6.420 6 O -0.255 6.255 7 C 0.030 3.970 8 H 0.133 0.867 9 C -0.166 4.166 10 H 0.137 0.863 11 C -0.189 4.189 12 C -0.029 4.029 13 O -0.276 6.276 14 C 0.001 3.999 15 H 0.118 0.882 16 C -0.072 4.072 17 C -0.191 4.191 18 C -0.179 4.179 19 C -0.104 4.104 20 N -0.114 5.114 21 N -0.087 5.087 22 C 0.106 3.894 23 C -0.586 4.586 24 H 0.101 0.899 25 C -0.123 4.123 26 N -0.518 5.518 27 Si 0.699 3.301 28 H -0.195 1.195 29 H -0.204 1.204 30 H -0.188 1.188 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.203 0.797 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.656 21.189 -9.298 23.292 hybrid contribution -0.653 -0.084 -0.781 1.021 sum 2.003 21.106 -10.079 23.474 Atomic orbital electron populations 1.20694 0.86549 1.05415 1.03426 1.21435 0.94962 0.86298 0.93452 1.18840 0.93726 0.89458 1.30793 1.20058 0.83598 0.85105 0.71516 1.90739 1.18005 1.84424 1.48787 1.86625 1.39253 1.15287 1.84327 1.24506 0.99635 0.77465 0.95442 0.86700 1.24506 0.98847 0.96920 0.96288 0.86269 1.22953 0.97904 0.97258 1.00793 1.23506 0.98595 0.95797 0.85013 1.89041 1.30478 1.77288 1.30756 1.23972 0.88269 0.91097 0.96606 0.88156 1.22167 0.96764 0.92998 0.95306 1.21642 1.01740 1.01072 0.94629 1.21446 0.91933 1.01180 1.03382 1.23929 0.96701 0.92018 0.97766 1.77217 0.97771 1.12484 1.23880 1.48954 1.02885 1.07535 1.49278 1.20201 0.95833 0.73079 1.00335 1.21091 1.48268 0.99323 0.89949 0.89944 1.24792 0.94233 0.97390 0.95886 1.69856 1.44974 1.18239 1.18688 0.86893 0.79138 0.81520 0.82510 1.19474 1.20364 1.18833 0.90223 0.89427 0.88412 0.89809 0.90311 0.88860 0.92180 0.92238 0.92077 0.91732 0.91669 0.92241 0.91091 0.79688 0.92877 0.92944 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 9.34 36.01 0.34 -1.41 16 2 C 0.18 3.46 7.01 -81.59 -0.57 2.89 16 3 C -0.31 -5.78 6.13 -105.08 -0.64 -6.42 16 4 C 0.55 9.31 7.95 34.41 0.27 9.58 16 5 O -0.53 -9.62 14.06 -19.28 -0.27 -9.89 16 6 O -0.34 -4.81 9.19 -40.63 -0.37 -5.18 16 7 C 0.08 1.03 2.95 -26.01 -0.08 0.95 16 8 H 0.12 1.61 6.71 -51.92 -0.35 1.26 16 9 C -0.15 -1.42 4.50 -88.38 -0.40 -1.81 16 10 H 0.12 1.05 8.02 -51.93 -0.42 0.63 16 11 C -0.15 -1.33 6.64 -25.18 -0.17 -1.50 16 12 C 0.05 0.38 7.63 37.92 0.29 0.67 16 13 O -0.36 -3.71 10.28 -35.23 -0.36 -4.08 16 14 C 0.06 0.53 4.75 -25.36 -0.12 0.41 16 15 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 16 C -0.07 -0.72 1.32 -153.87 -0.20 -0.92 16 17 C -0.13 -1.35 8.79 37.16 0.33 -1.02 16 18 C -0.12 -1.06 8.42 37.16 0.31 -0.75 16 19 C 0.08 1.48 11.87 -16.97 -0.20 1.28 16 20 N -0.29 -6.21 12.50 30.87 0.39 -5.83 16 21 N -0.31 -6.77 3.56 -57.77 -0.21 -6.97 16 22 C 0.22 5.12 4.85 -5.20 -0.03 5.09 16 23 C -0.55 -14.80 9.94 -34.44 -0.34 -15.14 16 24 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 25 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 26 N -0.88 -25.54 13.96 55.43 0.77 -24.77 16 27 Si 0.87 19.47 27.47 -169.99 -4.67 14.80 16 28 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 30 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.54 7.69 -51.93 -0.40 1.14 16 33 H 0.10 1.65 6.51 -51.93 -0.34 1.31 16 34 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.71 7.56 -51.93 -0.39 0.32 16 41 H 0.06 0.56 7.54 -51.93 -0.39 0.16 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.19 2.54 8.06 -52.49 -0.42 2.12 16 45 H 0.05 1.12 6.67 -51.93 -0.35 0.78 16 46 H 0.05 1.18 7.57 -51.93 -0.39 0.79 16 47 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -31.04 383.19 -7.51 -38.55 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.25 Total: 3.57 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.31 Total: -5.98 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.95 Total: -37.57 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -1.01 Total: -19.15 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.67 Total: 14.80 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.04 -7.51 -38.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892716109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.535 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds