Wall clock time and date at job start Tue Mar 31 2020 20:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38116 * 126.29454 * 2 1 4 4 C 1.47289 * 126.42947 * 359.97438 * 3 2 1 5 5 O 1.21521 * 119.99711 * 0.02562 * 4 3 2 6 6 O 1.34753 * 119.99737 * 180.02562 * 4 3 2 7 7 C 1.45201 * 116.99523 * 179.97438 * 6 4 3 8 8 H 1.09008 * 112.79335 * 19.05036 * 7 6 4 9 9 C 1.53747 * 113.53549 * 248.00649 * 7 6 4 10 10 H 1.08997 * 116.36725 * 339.82867 * 9 7 6 11 11 C 1.54492 * 112.86020 * 117.10611 * 9 7 6 12 12 C 1.54460 * 104.13482 * 92.92969 * 11 9 7 13 13 O 1.44397 * 104.80538 * 335.87212 * 12 11 9 14 14 C 1.44249 * 105.40376 * 40.57295 * 13 12 11 15 15 H 1.08996 * 114.89414 * 89.85042 * 14 13 12 16 16 C 1.53578 * 113.40451 * 226.32319 * 14 13 12 17 17 C 1.53001 * 113.53673 * 325.84314 * 16 14 13 18 18 C 1.53008 * 113.59923 * 195.19860 * 16 14 13 19 19 C 1.41342 * 107.14647 * 180.02562 * 3 2 1 20 20 N 1.30434 * 108.01213 * 359.97438 * 19 3 2 21 21 N 1.34225 * 126.29066 * 180.02562 * 2 1 3 22 22 C 1.46497 * 125.75033 * 359.97104 * 21 2 1 23 23 C 1.50699 * 109.46911 * 270.03058 * 22 21 2 24 24 H 1.07998 * 120.00670 * 359.97438 * 23 22 21 25 25 C 1.37882 * 119.99964 * 179.97438 * 23 22 21 26 26 N 1.31510 * 120.00381 * 180.02562 * 25 23 22 27 27 Si 1.86803 * 119.99813 * 359.97438 * 25 23 22 28 28 H 1.48492 * 109.47267 * 89.99990 * 27 25 23 29 29 H 1.48495 * 109.47063 * 210.00393 * 27 25 23 30 30 H 1.48507 * 109.46983 * 330.00182 * 27 25 23 31 31 H 1.08999 * 109.47289 * 89.97614 * 1 2 3 32 32 H 1.09005 * 109.47225 * 209.97467 * 1 2 3 33 33 H 1.08994 * 109.47238 * 329.97143 * 1 2 3 34 34 H 1.09004 * 110.49613 * 334.27140 * 11 9 7 35 35 H 1.08998 * 110.50071 * 211.59480 * 11 9 7 36 36 H 1.09003 * 110.37420 * 217.03983 * 12 11 9 37 37 H 1.08999 * 110.45922 * 94.74683 * 12 11 9 38 38 H 1.08997 * 109.47044 * 177.50283 * 17 16 14 39 39 H 1.09003 * 109.47238 * 297.49520 * 17 16 14 40 40 H 1.08996 * 109.47046 * 57.49965 * 17 16 14 41 41 H 1.09002 * 109.46381 * 302.46925 * 18 16 14 42 42 H 1.08993 * 109.47560 * 62.46706 * 18 16 14 43 43 H 1.08997 * 109.46720 * 182.47068 * 18 16 14 44 44 H 1.08000 * 125.99724 * 180.02562 * 19 3 2 45 45 H 1.09000 * 109.46857 * 30.02585 * 22 21 2 46 46 H 1.08993 * 109.47128 * 150.02802 * 22 21 2 47 47 H 0.96996 * 120.00584 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 -0.0005 5 8 0.7018 2.7872 -0.0006 6 8 2.8015 3.5095 -0.0010 7 6 2.2982 4.8715 -0.0021 8 1 1.2607 4.9387 0.3256 9 6 2.5810 5.6295 -1.3095 10 1 3.3828 5.2353 -1.9338 11 6 1.2921 6.0421 -2.0548 12 6 1.0024 7.4709 -1.5444 13 8 1.6545 7.5426 -0.2581 14 6 2.9142 6.8608 -0.4286 15 1 3.7401 7.4960 -0.7487 16 6 3.2297 5.8703 0.7019 17 6 2.7179 6.3226 2.0710 18 6 4.6926 5.4233 0.7341 19 6 3.6598 0.6496 -0.0006 20 7 3.6339 -0.6545 -0.0004 21 7 2.3015 -1.0819 -0.0005 22 6 1.8498 -2.4755 -0.0005 23 6 1.6948 -2.9533 1.4203 24 1 1.9114 -2.2858 2.2412 25 6 1.2762 -4.2426 1.6723 26 7 1.1405 -4.6595 2.9121 27 14 0.9007 -5.3970 0.2524 28 1 2.1328 -6.1352 -0.1245 29 1 -0.1489 -6.3633 0.6644 30 1 0.4197 -4.6099 -0.9114 31 1 -0.3634 0.0004 -1.0276 32 1 -0.3634 -0.8902 0.5135 33 1 -0.3633 0.8897 0.5142 34 1 0.4718 5.3717 -1.7985 35 1 1.4593 6.0481 -3.1318 36 1 -0.0712 7.6242 -1.4346 37 1 1.4231 8.2112 -2.2249 38 1 2.9372 5.5546 2.8127 39 1 3.2111 7.2525 2.3542 40 1 1.6410 6.4830 2.0215 41 1 4.9560 4.9732 -0.2231 42 1 5.3324 6.2863 0.9180 43 1 4.8315 4.6918 1.5302 44 1 4.5460 1.2668 -0.0004 45 1 0.8911 -2.5466 -0.5144 46 1 2.5843 -3.0955 -0.5143 47 1 0.8464 -5.5667 3.0894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892716109.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:52 Heat of formation + Delta-G solvation = -54.200694 kcal Electronic energy + Delta-G solvation = -29371.967736 eV Core-core repulsion = 25328.589595 eV Total energy + Delta-G solvation = -4043.378142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.24 seconds Orbital eigenvalues (eV) -42.59249 -42.26372 -40.46921 -37.62205 -36.18957 -35.79023 -34.03966 -33.08466 -32.93751 -30.07270 -29.76306 -28.49698 -28.30931 -26.33879 -24.95897 -24.09034 -23.65858 -21.79222 -21.75437 -20.52255 -19.63009 -19.30144 -18.89879 -17.93015 -17.30991 -16.95368 -16.68089 -16.53058 -16.25970 -16.05342 -15.78883 -15.21620 -15.13759 -14.56321 -14.55828 -14.44055 -14.34073 -14.06062 -13.85599 -13.74278 -13.45599 -13.24126 -13.09438 -13.05553 -13.03484 -12.77400 -12.67776 -12.59530 -12.28884 -12.15233 -11.93199 -11.90574 -11.83893 -11.65709 -11.39430 -11.29280 -10.93491 -10.78603 -10.56969 -10.33917 -9.68108 -8.44108 -6.57029 0.39392 1.14899 1.31635 1.36398 1.41281 1.48450 1.91177 2.21679 2.23939 2.63454 2.88414 3.12721 3.40967 3.50333 3.61679 3.68415 3.87326 3.90697 4.03294 4.08434 4.14300 4.23404 4.28409 4.34805 4.46465 4.47274 4.52059 4.59965 4.63244 4.70830 4.80177 4.80461 4.86460 4.93108 4.96560 5.01509 5.04208 5.07751 5.10110 5.15225 5.17459 5.33482 5.45450 5.50052 5.58319 5.76417 5.88902 6.15508 6.46471 6.66467 6.89791 7.07100 8.72333 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024194 B = 0.002553 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.023332 B =10965.527886 C =11287.933580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.163 3.837 3 C -0.321 4.321 4 C 0.554 3.446 5 O -0.545 6.545 6 O -0.331 6.331 7 C 0.068 3.932 8 H 0.090 0.910 9 C -0.142 4.142 10 H 0.134 0.866 11 C -0.151 4.151 12 C 0.046 3.954 13 O -0.380 6.380 14 C 0.068 3.932 15 H 0.128 0.872 16 C -0.071 4.071 17 C -0.133 4.133 18 C -0.120 4.120 19 C 0.100 3.900 20 N -0.331 5.331 21 N -0.334 5.334 22 C 0.232 3.768 23 C -0.556 4.556 24 H 0.026 0.974 25 C 0.024 3.976 26 N -0.935 5.935 27 Si 0.950 3.050 28 H -0.263 1.263 29 H -0.275 1.275 30 H -0.232 1.232 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.225 0.775 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 23.904 -12.422 27.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.026 3.974 3 C -0.334 4.334 4 C 0.402 3.598 5 O -0.437 6.437 6 O -0.247 6.247 7 C 0.013 3.987 8 H 0.108 0.892 9 C -0.161 4.161 10 H 0.152 0.848 11 C -0.189 4.189 12 C -0.030 4.030 13 O -0.299 6.299 14 C 0.010 3.990 15 H 0.145 0.855 16 C -0.072 4.072 17 C -0.190 4.190 18 C -0.177 4.177 19 C -0.088 4.088 20 N -0.150 5.150 21 N -0.110 5.110 22 C 0.113 3.887 23 C -0.594 4.594 24 H 0.044 0.956 25 C -0.176 4.176 26 N -0.573 5.573 27 Si 0.770 3.230 28 H -0.188 1.188 29 H -0.200 1.200 30 H -0.155 1.155 31 H 0.124 0.876 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.241 0.759 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.413 22.719 -12.106 25.968 hybrid contribution -0.864 -0.357 0.207 0.958 sum 2.549 22.361 -11.900 25.458 Atomic orbital electron populations 1.20722 0.85124 1.04749 1.04933 1.21952 0.96106 0.86324 0.92973 1.19079 0.93959 0.90064 1.30263 1.19856 0.83600 0.85168 0.71222 1.90732 1.18775 1.84717 1.49513 1.86600 1.38383 1.15902 1.83770 1.24829 0.99080 0.76514 0.98317 0.89203 1.24544 0.99623 0.96435 0.95482 0.84841 1.22952 0.96700 0.97247 1.01952 1.23647 0.99006 0.95818 0.84517 1.89023 1.31264 1.77422 1.32194 1.24045 0.88559 0.90997 0.95396 0.85487 1.22270 0.97092 0.92446 0.95343 1.21628 1.00937 1.01597 0.94855 1.21453 0.91113 1.01862 1.03271 1.24540 0.97757 0.91236 0.95231 1.77162 0.97874 1.14171 1.25792 1.48834 1.03492 1.07426 1.51211 1.19984 0.97062 0.74128 0.97513 1.21186 1.48357 0.98961 0.90925 0.95556 1.25825 0.93553 0.99206 0.99060 1.70019 1.46490 1.19087 1.21668 0.85697 0.79154 0.78868 0.79242 1.18814 1.20040 1.15486 0.87552 0.90431 0.88559 0.92092 0.88310 0.88527 0.89879 0.92949 0.90564 0.93275 0.91165 0.90083 0.92177 0.75912 0.90553 0.92320 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.29 9.34 71.24 0.67 -2.63 16 2 C 0.16 6.40 7.01 42.16 0.30 6.70 16 3 C -0.32 -11.62 6.13 -20.16 -0.12 -11.74 16 4 C 0.55 18.55 7.95 70.20 0.56 19.11 16 5 O -0.55 -19.95 14.06 19.77 0.28 -19.67 16 6 O -0.33 -9.07 9.19 -56.64 -0.52 -9.59 16 7 C 0.07 1.59 2.95 31.06 0.09 1.68 16 8 H 0.09 2.59 6.71 -2.38 -0.02 2.57 16 9 C -0.14 -2.44 4.50 -9.34 -0.04 -2.48 16 10 H 0.13 1.93 8.02 -2.39 -0.02 1.91 16 11 C -0.15 -2.39 6.64 31.60 0.21 -2.18 16 12 C 0.05 0.65 7.63 72.48 0.55 1.21 16 13 O -0.38 -7.27 10.28 -148.98 -1.53 -8.80 16 14 C 0.07 1.06 4.75 31.48 0.15 1.21 16 15 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 16 C -0.07 -1.31 1.32 -51.77 -0.07 -1.38 16 17 C -0.13 -2.59 8.79 71.98 0.63 -1.96 16 18 C -0.12 -1.80 8.42 71.98 0.61 -1.19 16 19 C 0.10 3.44 11.87 85.66 1.02 4.45 16 20 N -0.33 -13.93 12.50 -56.25 -0.70 -14.63 16 21 N -0.33 -14.58 3.56 -336.68 -1.20 -15.78 16 22 C 0.23 10.54 4.85 85.63 0.42 10.96 16 23 C -0.56 -31.02 9.94 25.60 0.25 -30.76 16 24 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 25 C 0.02 1.31 5.47 84.66 0.46 1.78 16 26 N -0.93 -56.04 13.96 21.45 0.30 -55.74 16 27 Si 0.95 39.61 27.47 68.60 1.88 41.50 16 28 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 29 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 30 H -0.23 -8.44 6.54 99.48 0.65 -7.79 16 31 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.08 2.76 7.69 -2.38 -0.02 2.74 16 33 H 0.10 3.28 6.51 -2.39 -0.02 3.26 16 34 H 0.06 1.25 7.90 -2.38 -0.02 1.23 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.05 1.09 7.56 -2.39 -0.02 1.08 16 41 H 0.07 0.99 7.54 -2.39 -0.02 0.97 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 44 H 0.22 5.61 8.06 -2.91 -0.02 5.58 16 45 H 0.08 3.09 6.67 -2.39 -0.02 3.07 16 46 H 0.06 2.58 7.57 -2.39 -0.02 2.56 16 47 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -70.72 383.19 5.10 -65.62 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.91 Total: 24.32 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.68 Total: -7.23 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -1.60 Total: -86.15 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -1.77 Total: -38.06 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 1.88 Total: 41.50 kcal Total: -70.72 5.10 -65.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892716109.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.418 kcal (2) G-P(sol) polarization free energy of solvation -70.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.24 seconds