Wall clock time and date at job start Tue Mar 31 2020 20:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38116 * 126.29454 * 2 1 4 4 C 1.47289 * 126.42947 * 359.97438 * 3 2 1 5 5 O 1.21521 * 119.99711 * 0.02562 * 4 3 2 6 6 O 1.34746 * 120.00059 * 180.02562 * 4 3 2 7 7 C 1.45197 * 117.00210 * 179.97438 * 6 4 3 8 8 H 1.09008 * 112.78988 * 19.04994 * 7 6 4 9 9 C 1.53747 * 113.53689 * 248.00803 * 7 6 4 10 10 H 1.09000 * 116.36376 * 150.82411 * 9 7 6 11 11 C 1.54486 * 112.85829 * 13.54283 * 9 7 6 12 12 C 1.54449 * 104.13669 * 267.07019 * 11 9 7 13 13 O 1.44400 * 104.80599 * 24.12906 * 12 11 9 14 14 C 1.44253 * 105.39999 * 319.42707 * 13 12 11 15 15 H 1.08995 * 115.52133 * 270.85553 * 14 13 12 16 16 C 1.53580 * 113.40361 * 133.67705 * 14 13 12 17 17 C 1.52997 * 113.53728 * 164.81220 * 16 14 13 18 18 C 1.52999 * 113.53681 * 34.15546 * 16 14 13 19 19 C 1.41342 * 107.14647 * 180.02562 * 3 2 1 20 20 N 1.30434 * 108.01213 * 359.97438 * 19 3 2 21 21 N 1.34225 * 126.29066 * 180.02562 * 2 1 3 22 22 C 1.46497 * 125.75033 * 359.97104 * 21 2 1 23 23 C 1.50699 * 109.46911 * 270.03058 * 22 21 2 24 24 H 1.07998 * 120.00670 * 359.97438 * 23 22 21 25 25 C 1.37882 * 119.99964 * 179.97438 * 23 22 21 26 26 N 1.31515 * 119.99794 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00148 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47162 * 359.97438 * 27 25 23 29 29 H 1.48505 * 109.47357 * 119.99881 * 27 25 23 30 30 H 1.48501 * 109.47158 * 239.99734 * 27 25 23 31 31 H 1.09001 * 109.47429 * 90.02629 * 1 2 3 32 32 H 1.09005 * 109.47110 * 210.01961 * 1 2 3 33 33 H 1.09002 * 109.47035 * 330.01914 * 1 2 3 34 34 H 1.08998 * 110.50138 * 25.73505 * 11 9 7 35 35 H 1.09002 * 110.49924 * 148.27001 * 11 9 7 36 36 H 1.08994 * 110.37504 * 142.96080 * 12 11 9 37 37 H 1.09005 * 110.37434 * 265.19516 * 12 11 9 38 38 H 1.08998 * 109.47246 * 177.49796 * 17 16 14 39 39 H 1.09000 * 109.47094 * 297.49961 * 17 16 14 40 40 H 1.08999 * 109.46991 * 57.49655 * 17 16 14 41 41 H 1.09000 * 109.47523 * 302.50274 * 18 16 14 42 42 H 1.09000 * 109.47525 * 62.50730 * 18 16 14 43 43 H 1.09002 * 109.47005 * 182.50178 * 18 16 14 44 44 H 1.08000 * 125.99724 * 180.02562 * 19 3 2 45 45 H 1.09000 * 109.46857 * 30.02585 * 22 21 2 46 46 H 1.08993 * 109.47128 * 150.02802 * 22 21 2 47 47 H 0.96997 * 120.00195 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 -0.0005 5 8 0.7018 2.7872 -0.0006 6 8 2.8014 3.5095 -0.0010 7 6 2.2982 4.8715 -0.0021 8 1 1.2607 4.9387 0.3256 9 6 2.5810 5.6295 -1.3095 10 1 1.8653 6.4044 -1.5843 11 6 3.0353 4.6993 -2.4562 12 6 4.5772 4.7169 -2.3678 13 8 4.8642 5.0700 -0.9973 14 6 3.9080 6.0952 -0.6575 15 1 4.2203 7.1176 -0.8698 16 6 3.2297 5.8703 0.7019 17 6 2.5065 7.1083 1.2361 18 6 4.1458 5.2227 1.7421 19 6 3.6598 0.6496 -0.0006 20 7 3.6339 -0.6545 -0.0004 21 7 2.3015 -1.0819 -0.0005 22 6 1.8498 -2.4755 -0.0005 23 6 1.6948 -2.9533 1.4203 24 1 1.9114 -2.2858 2.2412 25 6 1.2762 -4.2426 1.6723 26 7 1.0119 -5.0553 0.6726 27 14 1.0834 -4.8347 3.4334 28 1 1.4401 -3.7362 4.3668 29 1 -0.3247 -5.2451 3.6663 30 1 1.9819 -5.9937 3.6672 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3633 -0.8899 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 2.6558 3.6893 -2.3016 35 1 2.7017 5.0882 -3.4182 36 1 4.9819 3.7315 -2.5984 37 1 4.9878 5.4637 -3.0475 38 1 2.0141 6.8635 2.1772 39 1 3.2286 7.9079 1.4011 40 1 1.7618 7.4353 0.5106 41 1 4.5134 4.2703 1.3600 42 1 4.9893 5.8827 1.9447 43 1 3.5876 5.0536 2.6629 44 1 4.5460 1.2668 -0.0004 45 1 0.8911 -2.5466 -0.5144 46 1 2.5843 -3.0955 -0.5143 47 1 0.7171 -5.9623 0.8498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892716110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:00 Heat of formation + Delta-G solvation = -35.515507 kcal Electronic energy + Delta-G solvation = -29876.743785 eV Core-core repulsion = 25834.175894 eV Total energy + Delta-G solvation = -4042.567891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.62721 -40.76470 -39.03374 -36.36740 -35.25220 -33.92138 -32.17473 -32.09520 -31.23733 -29.09678 -27.81484 -27.43306 -26.76571 -25.21021 -23.53245 -23.29201 -22.35157 -20.91074 -20.19423 -18.97508 -18.60839 -17.52890 -16.81929 -16.59379 -16.32161 -16.05391 -15.42914 -15.28129 -14.98380 -14.59430 -14.39237 -14.01938 -13.72290 -13.45572 -13.21812 -13.17116 -12.75794 -12.64899 -12.54994 -12.41783 -12.33743 -12.11994 -11.88294 -11.82887 -11.56005 -11.48664 -11.18627 -11.15138 -11.11512 -10.93560 -10.70685 -10.43147 -10.40748 -10.29726 -9.94791 -9.93850 -9.77782 -9.64325 -8.74213 -8.63458 -8.06415 -6.36483 -4.44566 1.92760 2.71091 2.77750 3.15731 3.23956 3.28091 3.39902 3.51898 3.67198 4.00004 4.22470 4.28714 4.43106 4.69868 4.84937 4.89604 4.97215 4.99545 5.06544 5.11063 5.16427 5.21662 5.31865 5.39646 5.43122 5.50666 5.58946 5.60895 5.68634 5.73282 5.75899 5.80975 5.89667 5.97386 5.99080 6.04564 6.11348 6.39213 6.42921 6.47274 6.72308 6.75967 6.85795 6.86964 7.14819 7.52284 7.71481 7.73899 8.22014 8.36841 8.61638 9.22804 10.71749 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.002810 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.236329 B = 9962.905238 C =10216.210690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.172 3.828 3 C -0.317 4.317 4 C 0.547 3.453 5 O -0.532 6.532 6 O -0.315 6.315 7 C 0.083 3.917 8 H 0.098 0.902 9 C -0.155 4.155 10 H 0.118 0.882 11 C -0.143 4.143 12 C 0.053 3.947 13 O -0.342 6.342 14 C 0.062 3.938 15 H 0.090 0.910 16 C -0.077 4.077 17 C -0.127 4.127 18 C -0.130 4.130 19 C 0.082 3.918 20 N -0.297 5.297 21 N -0.311 5.311 22 C 0.250 3.750 23 C -0.542 4.542 24 H 0.067 0.933 25 C 0.068 3.932 26 N -0.889 5.889 27 Si 0.908 3.092 28 H -0.270 1.270 29 H -0.280 1.280 30 H -0.279 1.279 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.185 0.815 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 22.963 -4.325 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.033 3.967 3 C -0.331 4.331 4 C 0.395 3.605 5 O -0.423 6.423 6 O -0.231 6.231 7 C 0.027 3.973 8 H 0.116 0.884 9 C -0.173 4.173 10 H 0.136 0.864 11 C -0.180 4.180 12 C -0.023 4.023 13 O -0.261 6.261 14 C 0.004 3.996 15 H 0.108 0.892 16 C -0.077 4.077 17 C -0.184 4.184 18 C -0.187 4.187 19 C -0.105 4.105 20 N -0.116 5.116 21 N -0.087 5.087 22 C 0.133 3.867 23 C -0.580 4.580 24 H 0.085 0.915 25 C -0.136 4.136 26 N -0.526 5.526 27 Si 0.735 3.265 28 H -0.195 1.195 29 H -0.205 1.205 30 H -0.205 1.205 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.202 0.798 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.108 21.493 -4.243 22.127 hybrid contribution -0.803 0.387 0.652 1.104 sum 2.305 21.880 -3.591 22.293 Atomic orbital electron populations 1.20659 0.86681 1.05060 1.03453 1.21440 0.94931 0.86464 0.93822 1.18817 0.93765 0.89246 1.31238 1.20172 0.83585 0.85233 0.71555 1.90735 1.18082 1.84404 1.49039 1.86652 1.38310 1.14172 1.83921 1.23450 0.98705 0.79463 0.95711 0.88377 1.24484 0.99160 0.98717 0.94987 0.86403 1.22756 0.96345 1.01005 0.97924 1.23386 0.94199 1.00877 0.83859 1.89072 1.54014 1.55326 1.27647 1.24090 0.87629 0.92264 0.95636 0.89223 1.22102 0.95673 0.95162 0.94794 1.21551 1.00035 0.95419 1.01389 1.21507 0.98266 1.01895 0.97032 1.23932 0.96673 0.92060 0.97877 1.77222 0.98208 1.12372 1.23844 1.49426 1.02643 1.08258 1.48346 1.19897 0.96496 0.70710 0.99569 1.21297 1.47471 0.98244 0.90973 0.91516 1.24929 0.94393 0.95958 0.98360 1.69920 1.44411 1.07195 1.31100 0.86263 0.77970 0.78893 0.83380 1.19477 1.20530 1.20524 0.90276 0.89532 0.88695 0.90210 0.90844 0.88856 0.92732 0.91406 0.91411 0.92105 0.90305 0.92660 0.92904 0.79840 0.92487 0.92308 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 9.34 36.01 0.34 -1.43 16 2 C 0.17 3.47 7.01 -81.59 -0.57 2.90 16 3 C -0.32 -5.98 6.13 -105.08 -0.64 -6.63 16 4 C 0.55 9.43 7.47 34.41 0.26 9.69 16 5 O -0.53 -9.79 14.06 -19.28 -0.27 -10.06 16 6 O -0.31 -4.64 6.44 -45.72 -0.29 -4.93 16 7 C 0.08 1.00 3.61 -26.01 -0.09 0.91 16 8 H 0.10 1.26 7.02 -51.92 -0.36 0.90 16 9 C -0.15 -1.51 4.66 -88.39 -0.41 -1.92 16 10 H 0.12 0.90 8.01 -51.93 -0.42 0.49 16 11 C -0.14 -1.46 6.29 -25.19 -0.16 -1.62 16 12 C 0.05 0.53 7.62 37.92 0.29 0.82 16 13 O -0.34 -4.09 9.67 -48.72 -0.47 -4.56 16 14 C 0.06 0.60 4.75 -25.37 -0.12 0.48 16 15 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 16 C -0.08 -0.76 1.32 -153.87 -0.20 -0.97 16 17 C -0.13 -0.92 9.08 37.16 0.34 -0.58 16 18 C -0.13 -1.42 8.61 37.16 0.32 -1.10 16 19 C 0.08 1.52 11.87 -16.97 -0.20 1.32 16 20 N -0.30 -6.49 12.50 30.87 0.39 -6.11 16 21 N -0.31 -7.00 3.56 -57.77 -0.21 -7.21 16 22 C 0.25 6.16 5.78 -5.20 -0.03 6.13 16 23 C -0.54 -14.47 9.39 -34.44 -0.32 -14.79 16 24 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 25 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 26 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 27 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 30 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 1.57 7.70 -51.93 -0.40 1.17 16 33 H 0.09 1.62 6.50 -51.93 -0.34 1.29 16 34 H 0.08 1.01 6.71 -51.93 -0.35 0.66 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.38 7.63 -51.93 -0.40 -0.02 16 41 H 0.08 1.03 6.61 -51.93 -0.34 0.69 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.18 2.79 8.06 -52.49 -0.42 2.37 16 45 H 0.06 1.38 7.62 -51.93 -0.40 0.99 16 46 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 382.14 15.07 5.76 5.76 Total: -1.00 -29.96 382.14 -7.90 -37.85 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.20 Total: 2.31 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.32 Total: -5.09 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.92 Total: -36.94 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -1.04 Total: -19.56 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.96 -7.90 -37.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892716110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.337 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds