Wall clock time and date at job start Tue Mar 31 2020 20:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38116 * 126.29454 * 2 1 4 4 C 1.47289 * 126.42947 * 359.97438 * 3 2 1 5 5 O 1.21521 * 119.99711 * 0.02562 * 4 3 2 6 6 O 1.34746 * 120.00059 * 180.02562 * 4 3 2 7 7 C 1.45197 * 117.00210 * 179.97438 * 6 4 3 8 8 H 1.09008 * 112.78988 * 19.04994 * 7 6 4 9 9 C 1.53747 * 113.53689 * 248.00803 * 7 6 4 10 10 H 1.09000 * 116.36376 * 150.82411 * 9 7 6 11 11 C 1.54486 * 112.85829 * 13.54283 * 9 7 6 12 12 C 1.54449 * 104.13669 * 267.07019 * 11 9 7 13 13 O 1.44400 * 104.80599 * 24.12906 * 12 11 9 14 14 C 1.44253 * 105.39999 * 319.42707 * 13 12 11 15 15 H 1.08995 * 115.52133 * 270.85553 * 14 13 12 16 16 C 1.53580 * 113.40361 * 133.67705 * 14 13 12 17 17 C 1.52997 * 113.53728 * 164.81220 * 16 14 13 18 18 C 1.52999 * 113.53681 * 34.15546 * 16 14 13 19 19 C 1.41342 * 107.14647 * 180.02562 * 3 2 1 20 20 N 1.30434 * 108.01213 * 359.97438 * 19 3 2 21 21 N 1.34225 * 126.29066 * 180.02562 * 2 1 3 22 22 C 1.46497 * 125.75033 * 359.97104 * 21 2 1 23 23 C 1.50699 * 109.46911 * 270.03058 * 22 21 2 24 24 H 1.07998 * 120.00670 * 359.97438 * 23 22 21 25 25 C 1.37882 * 119.99964 * 179.97438 * 23 22 21 26 26 N 1.31515 * 119.99794 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00148 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47162 * 359.97438 * 27 25 23 29 29 H 1.48505 * 109.47357 * 119.99881 * 27 25 23 30 30 H 1.48501 * 109.47158 * 239.99734 * 27 25 23 31 31 H 1.09001 * 109.47429 * 90.02629 * 1 2 3 32 32 H 1.09005 * 109.47110 * 210.01961 * 1 2 3 33 33 H 1.09002 * 109.47035 * 330.01914 * 1 2 3 34 34 H 1.08998 * 110.50138 * 25.73505 * 11 9 7 35 35 H 1.09002 * 110.49924 * 148.27001 * 11 9 7 36 36 H 1.08994 * 110.37504 * 142.96080 * 12 11 9 37 37 H 1.09005 * 110.37434 * 265.19516 * 12 11 9 38 38 H 1.08998 * 109.47246 * 177.49796 * 17 16 14 39 39 H 1.09000 * 109.47094 * 297.49961 * 17 16 14 40 40 H 1.08999 * 109.46991 * 57.49655 * 17 16 14 41 41 H 1.09000 * 109.47523 * 302.50274 * 18 16 14 42 42 H 1.09000 * 109.47525 * 62.50730 * 18 16 14 43 43 H 1.09002 * 109.47005 * 182.50178 * 18 16 14 44 44 H 1.08000 * 125.99724 * 180.02562 * 19 3 2 45 45 H 1.09000 * 109.46857 * 30.02585 * 22 21 2 46 46 H 1.08993 * 109.47128 * 150.02802 * 22 21 2 47 47 H 0.96997 * 120.00195 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 -0.0005 5 8 0.7018 2.7872 -0.0006 6 8 2.8014 3.5095 -0.0010 7 6 2.2982 4.8715 -0.0021 8 1 1.2607 4.9387 0.3256 9 6 2.5810 5.6295 -1.3095 10 1 1.8653 6.4044 -1.5843 11 6 3.0353 4.6993 -2.4562 12 6 4.5772 4.7169 -2.3678 13 8 4.8642 5.0700 -0.9973 14 6 3.9080 6.0952 -0.6575 15 1 4.2203 7.1176 -0.8698 16 6 3.2297 5.8703 0.7019 17 6 2.5065 7.1083 1.2361 18 6 4.1458 5.2227 1.7421 19 6 3.6598 0.6496 -0.0006 20 7 3.6339 -0.6545 -0.0004 21 7 2.3015 -1.0819 -0.0005 22 6 1.8498 -2.4755 -0.0005 23 6 1.6948 -2.9533 1.4203 24 1 1.9114 -2.2858 2.2412 25 6 1.2762 -4.2426 1.6723 26 7 1.0119 -5.0553 0.6726 27 14 1.0834 -4.8347 3.4334 28 1 1.4401 -3.7362 4.3668 29 1 -0.3247 -5.2451 3.6663 30 1 1.9819 -5.9937 3.6672 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3633 -0.8899 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 2.6558 3.6893 -2.3016 35 1 2.7017 5.0882 -3.4182 36 1 4.9819 3.7315 -2.5984 37 1 4.9878 5.4637 -3.0475 38 1 2.0141 6.8635 2.1772 39 1 3.2286 7.9079 1.4011 40 1 1.7618 7.4353 0.5106 41 1 4.5134 4.2703 1.3600 42 1 4.9893 5.8827 1.9447 43 1 3.5876 5.0536 2.6629 44 1 4.5460 1.2668 -0.0004 45 1 0.8911 -2.5466 -0.5144 46 1 2.5843 -3.0955 -0.5143 47 1 0.7171 -5.9623 0.8498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892716110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:59 Heat of formation + Delta-G solvation = -51.098464 kcal Electronic energy + Delta-G solvation = -29877.419513 eV Core-core repulsion = 25834.175894 eV Total energy + Delta-G solvation = -4043.243619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.62671 -42.22647 -40.29819 -37.38500 -36.30333 -35.84022 -33.90674 -32.97492 -32.82861 -29.92645 -29.42900 -28.44372 -28.14990 -26.27372 -25.32638 -24.04564 -23.76250 -22.02780 -21.38256 -20.50354 -19.56927 -18.96000 -18.74721 -17.66819 -17.24990 -17.22896 -16.77238 -16.46185 -16.29247 -15.96820 -15.91150 -15.21313 -14.98189 -14.50936 -14.43213 -14.31807 -14.10771 -13.90537 -13.71118 -13.63872 -13.58256 -13.18334 -13.14786 -13.01354 -12.99944 -12.73823 -12.68618 -12.51178 -12.35426 -12.00974 -11.93083 -11.86779 -11.85676 -11.52031 -11.30586 -11.23256 -10.79089 -10.77877 -10.42695 -10.34087 -9.67913 -8.40057 -6.56346 0.42206 1.16443 1.35704 1.37503 1.41693 1.51696 1.89090 2.22725 2.31572 2.75767 2.92529 3.18737 3.45097 3.57426 3.64728 3.77527 3.92795 3.96518 4.11023 4.13231 4.21472 4.27746 4.36561 4.38654 4.46772 4.54253 4.60343 4.69485 4.76285 4.81258 4.83663 4.89014 4.91593 4.95822 4.98554 5.03346 5.08184 5.12101 5.15685 5.18512 5.34071 5.47166 5.52286 5.55660 5.62195 5.71837 5.95502 6.03484 6.52253 6.71017 6.93602 7.15085 8.68251 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.002810 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.236329 B = 9962.905238 C =10216.210690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.161 3.839 3 C -0.320 4.320 4 C 0.554 3.446 5 O -0.545 6.545 6 O -0.312 6.312 7 C 0.061 3.939 8 H 0.089 0.911 9 C -0.147 4.147 10 H 0.146 0.854 11 C -0.144 4.144 12 C 0.052 3.948 13 O -0.369 6.369 14 C 0.064 3.936 15 H 0.117 0.883 16 C -0.072 4.072 17 C -0.123 4.123 18 C -0.130 4.130 19 C 0.098 3.902 20 N -0.334 5.334 21 N -0.332 5.332 22 C 0.266 3.734 23 C -0.558 4.558 24 H 0.051 0.949 25 C 0.026 3.974 26 N -0.915 5.915 27 Si 0.971 3.029 28 H -0.274 1.274 29 H -0.267 1.267 30 H -0.274 1.274 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.215 0.785 45 H 0.056 0.944 46 H 0.034 0.966 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 25.598 -4.146 26.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.024 3.976 3 C -0.333 4.333 4 C 0.401 3.599 5 O -0.437 6.437 6 O -0.228 6.228 7 C 0.005 3.995 8 H 0.107 0.893 9 C -0.165 4.165 10 H 0.163 0.837 11 C -0.182 4.182 12 C -0.025 4.025 13 O -0.288 6.288 14 C 0.006 3.994 15 H 0.135 0.865 16 C -0.072 4.072 17 C -0.180 4.180 18 C -0.187 4.187 19 C -0.089 4.089 20 N -0.153 5.153 21 N -0.109 5.109 22 C 0.148 3.852 23 C -0.596 4.596 24 H 0.070 0.930 25 C -0.176 4.176 26 N -0.553 5.553 27 Si 0.795 3.205 28 H -0.198 1.198 29 H -0.192 1.192 30 H -0.199 1.199 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.232 0.768 45 H 0.074 0.926 46 H 0.052 0.948 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.027 24.154 -4.073 24.682 hybrid contribution -0.730 -0.303 0.561 0.969 sum 2.298 23.851 -3.512 24.218 Atomic orbital electron populations 1.20680 0.85124 1.04741 1.04597 1.21946 0.96086 0.86269 0.93308 1.19047 0.93699 0.90129 1.30432 1.19855 0.83577 0.85161 0.71270 1.90719 1.18638 1.84666 1.49672 1.86630 1.37590 1.15223 1.83316 1.23914 0.98819 0.78289 0.98480 0.89323 1.24576 0.99809 0.98594 0.93502 0.83665 1.22754 0.96561 0.99580 0.99268 1.23476 0.94064 1.01322 0.83615 1.89046 1.54811 1.56279 1.28639 1.24250 0.87157 0.92930 0.95057 0.86547 1.22230 0.95013 0.95294 0.94713 1.21576 1.00554 0.94398 1.01508 1.21476 0.98969 1.01050 0.97203 1.24409 0.97692 0.91229 0.95596 1.77170 0.98273 1.14017 1.25819 1.49187 1.03309 1.07901 1.50469 1.19456 0.95554 0.71868 0.98317 1.21418 1.48065 0.98598 0.91488 0.93028 1.25708 0.93760 0.95867 1.02249 1.69992 1.44679 1.07653 1.32955 0.85301 0.78513 0.78167 0.78486 1.19821 1.19190 1.19891 0.88374 0.90491 0.88114 0.93193 0.88716 0.89654 0.90411 0.91666 0.89604 0.90702 0.92886 0.91443 0.93139 0.76840 0.92636 0.94770 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.31 9.34 71.24 0.67 -2.65 16 2 C 0.16 6.62 7.01 42.16 0.30 6.92 16 3 C -0.32 -12.15 6.13 -20.16 -0.12 -12.27 16 4 C 0.55 19.01 7.47 70.20 0.52 19.53 16 5 O -0.54 -19.86 14.06 19.77 0.28 -19.58 16 6 O -0.31 -9.06 6.44 -51.69 -0.33 -9.40 16 7 C 0.06 1.38 3.61 31.06 0.11 1.49 16 8 H 0.09 2.18 7.02 -2.38 -0.02 2.17 16 9 C -0.15 -2.47 4.66 -9.35 -0.04 -2.51 16 10 H 0.15 1.65 8.01 -2.39 -0.02 1.63 16 11 C -0.14 -2.68 6.29 31.59 0.20 -2.48 16 12 C 0.05 0.94 7.62 72.47 0.55 1.49 16 13 O -0.37 -8.17 9.67 -136.08 -1.32 -9.49 16 14 C 0.06 1.05 4.75 31.48 0.15 1.20 16 15 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 16 C -0.07 -1.27 1.32 -51.77 -0.07 -1.34 16 17 C -0.12 -1.40 9.08 71.98 0.65 -0.75 16 18 C -0.13 -2.69 8.61 71.98 0.62 -2.07 16 19 C 0.10 3.65 11.87 85.66 1.02 4.67 16 20 N -0.33 -14.96 12.50 -56.25 -0.70 -15.66 16 21 N -0.33 -15.47 3.56 -336.68 -1.20 -16.67 16 22 C 0.27 13.65 5.78 85.63 0.50 14.14 16 23 C -0.56 -30.61 9.39 25.60 0.24 -30.37 16 24 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 25 C 0.03 1.39 5.46 84.66 0.46 1.85 16 26 N -0.91 -50.71 13.29 21.45 0.28 -50.42 16 27 Si 0.97 42.53 29.54 68.60 2.03 44.55 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 30 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 31 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.08 2.86 7.70 -2.38 -0.02 2.84 16 33 H 0.10 3.44 6.50 -2.39 -0.02 3.42 16 34 H 0.05 1.24 6.71 -2.39 -0.02 1.22 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 0.66 7.63 -2.39 -0.02 0.64 16 41 H 0.05 1.37 6.61 -2.39 -0.02 1.35 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.22 6.39 8.06 -2.91 -0.02 6.36 16 45 H 0.06 2.81 7.62 -2.39 -0.02 2.79 16 46 H 0.03 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -65.61 382.14 5.76 -59.85 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.97 Total: 19.96 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.75 Total: -3.15 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.62 Total: -82.76 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.37 Total: -38.46 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -65.61 5.76 -59.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892716110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.756 kcal (2) G-P(sol) polarization free energy of solvation -65.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds