Wall clock time and date at job start Tue Mar 31 2020 20:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38132 * 126.29568 * 2 1 4 4 C 1.47291 * 126.42544 * 0.02562 * 3 2 1 5 5 O 1.21526 * 120.00004 * 359.97438 * 4 3 2 6 6 O 1.34755 * 119.99948 * 180.02562 * 4 3 2 7 7 C 1.45194 * 116.99975 * 179.97438 * 6 4 3 8 8 H 1.09001 * 113.49313 * 15.97150 * 7 6 4 9 9 C 1.50654 * 114.50115 * 241.88718 * 7 6 4 10 10 H 1.09001 * 114.94407 * 173.72831 * 9 7 6 11 11 C 1.52687 * 126.48737 * 17.91423 * 9 7 6 12 12 C 1.56140 * 100.01001 * 233.63318 * 11 9 7 13 13 O 1.45502 * 105.72555 * 23.26594 * 12 11 9 14 14 C 1.38975 * 106.82258 * 12.34706 * 13 12 11 15 15 H 1.08992 * 109.74436 * 75.37279 * 14 13 12 16 16 C 1.48990 * 135.72267 * 229.05945 * 14 13 12 17 17 C 1.53000 * 114.58229 * 25.89478 * 16 14 13 18 18 C 1.52999 * 114.57526 * 252.04503 * 16 14 13 19 19 C 1.41341 * 107.14495 * 179.97438 * 3 2 1 20 20 N 1.30429 * 108.01791 * 359.97438 * 19 3 2 21 21 N 1.34224 * 126.29883 * 179.97438 * 2 1 3 22 22 C 1.46500 * 125.74194 * 359.76436 * 21 2 1 23 23 C 1.50700 * 109.47430 * 89.99537 * 22 21 2 24 24 H 1.08006 * 119.99752 * 0.02562 * 23 22 21 25 25 C 1.37878 * 120.00024 * 179.97438 * 23 22 21 26 26 N 1.31519 * 119.99467 * 180.02562 * 25 23 22 27 27 Si 1.86795 * 120.00148 * 0.02562 * 25 23 22 28 28 H 1.48498 * 109.47273 * 90.00020 * 27 25 23 29 29 H 1.48496 * 109.47237 * 209.99913 * 27 25 23 30 30 H 1.48502 * 109.47018 * 330.00020 * 27 25 23 31 31 H 1.09000 * 109.47612 * 270.02578 * 1 2 3 32 32 H 1.08998 * 109.47042 * 30.02912 * 1 2 3 33 33 H 1.09002 * 109.46862 * 150.02802 * 1 2 3 34 34 H 1.09000 * 111.29864 * 115.93429 * 11 9 7 35 35 H 1.09001 * 111.33810 * 351.34443 * 11 9 7 36 36 H 1.09003 * 110.19564 * 264.19821 * 12 11 9 37 37 H 1.09002 * 110.26153 * 142.36667 * 12 11 9 38 38 H 1.09001 * 109.47121 * 140.85234 * 17 16 14 39 39 H 1.08996 * 109.47301 * 260.86106 * 17 16 14 40 40 H 1.09000 * 109.46842 * 20.85886 * 17 16 14 41 41 H 1.08997 * 109.47222 * 309.12348 * 18 16 14 42 42 H 1.08998 * 109.47202 * 69.12067 * 18 16 14 43 43 H 1.08997 * 109.47460 * 189.12114 * 18 16 14 44 44 H 1.08006 * 125.98726 * 180.02562 * 19 3 2 45 45 H 1.08995 * 109.47134 * 209.99752 * 22 21 2 46 46 H 1.09003 * 109.46896 * 329.99347 * 22 21 2 47 47 H 0.96994 * 119.99412 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5197 0.0005 5 8 0.7017 2.7874 0.0006 6 8 2.8014 3.5097 -0.0001 7 6 2.2981 4.8717 -0.0001 8 1 1.2462 4.9462 0.2755 9 6 2.6870 5.6814 -1.2095 10 1 2.2265 6.6675 -1.2700 11 6 3.1911 5.1360 -2.5436 12 6 4.5156 5.9504 -2.6866 13 8 4.8858 6.3419 -1.3350 14 6 4.0864 5.6047 -0.4696 15 1 4.4455 4.5767 -0.4224 16 6 3.2306 5.9083 0.7115 17 6 2.6822 7.3362 0.7500 18 6 3.8023 5.4362 2.0498 19 6 3.6598 0.6496 0.0006 20 7 3.6340 -0.6544 0.0015 21 7 2.3016 -1.0818 0.0005 22 6 1.8498 -2.4754 0.0060 23 6 1.6901 -2.9574 -1.4129 24 1 1.9041 -2.2922 -2.2365 25 6 1.2718 -4.2478 -1.6597 26 7 1.1329 -4.6684 -2.8980 27 14 0.9023 -5.3984 -0.2353 28 1 -0.5275 -5.2721 0.1451 29 1 1.1841 -6.7980 -0.6437 30 1 1.7568 -5.0398 0.9251 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8903 -0.5134 34 1 2.4968 5.3639 -3.3523 35 1 3.3887 4.0656 -2.4852 36 1 4.3492 6.8343 -3.3023 37 1 5.2958 5.3282 -3.1253 38 1 1.6550 7.3212 1.1144 39 1 3.2954 7.9430 1.4162 40 1 2.7056 7.7614 -0.2534 41 1 4.0877 4.3871 1.9732 42 1 4.6785 6.0336 2.3017 43 1 3.0480 5.5515 2.8282 44 1 4.5460 1.2670 0.0012 45 1 2.5861 -3.0939 0.5191 46 1 0.8929 -2.5451 0.5233 47 1 0.8383 -5.5761 -3.0716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892716111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:08 Heat of formation + Delta-G solvation = 34.116671 kcal Electronic energy + Delta-G solvation = -29581.811507 eV Core-core repulsion = 25542.263094 eV Total energy + Delta-G solvation = -4039.548413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.50266 -40.97483 -39.33653 -37.05974 -35.50243 -33.98825 -32.28822 -32.07613 -31.46488 -29.29058 -28.29751 -27.87607 -26.98363 -25.02867 -23.41772 -23.31546 -22.53009 -20.85582 -20.17951 -19.04818 -19.00552 -17.67358 -17.28499 -16.76934 -16.40466 -16.14545 -15.62718 -15.18678 -14.87304 -14.74936 -14.43280 -14.35885 -14.16966 -13.73866 -13.58280 -13.12154 -12.85348 -12.70027 -12.58340 -12.49253 -12.36887 -12.20592 -12.09950 -11.89765 -11.74548 -11.72000 -11.64505 -11.29655 -11.17313 -10.92893 -10.88418 -10.53700 -10.40029 -10.14375 -9.98680 -9.84836 -9.72952 -9.23645 -8.90821 -8.77572 -8.20379 -6.38612 -4.44278 1.77215 2.48071 2.57599 2.82974 3.05095 3.11071 3.14245 3.23069 3.51174 3.87599 4.10576 4.10954 4.47616 4.50933 4.69896 4.81849 4.86237 4.90913 5.00808 5.05680 5.07847 5.17774 5.23409 5.25520 5.36948 5.43996 5.53550 5.54804 5.56877 5.64713 5.66604 5.74715 5.82792 5.86325 5.88240 5.93014 6.03844 6.13172 6.18279 6.28297 6.37830 6.47477 6.64711 6.86890 6.92861 7.10961 7.41041 8.03474 8.12661 8.19358 8.64126 9.14705 10.73470 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.002690 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.381112 B =10404.800877 C =10738.639882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.178 3.822 3 C -0.316 4.316 4 C 0.551 3.449 5 O -0.523 6.523 6 O -0.328 6.328 7 C 0.092 3.908 8 H 0.110 0.890 9 C -0.209 4.209 10 H 0.134 0.866 11 C -0.139 4.139 12 C 0.055 3.945 13 O -0.365 6.365 14 C 0.042 3.958 15 H 0.098 0.902 16 C -0.046 4.046 17 C -0.132 4.132 18 C -0.141 4.141 19 C 0.083 3.917 20 N -0.292 5.292 21 N -0.310 5.310 22 C 0.224 3.776 23 C -0.549 4.549 24 H 0.082 0.918 25 C 0.082 3.918 26 N -0.881 5.881 27 Si 0.872 3.128 28 H -0.269 1.269 29 H -0.278 1.278 30 H -0.263 1.263 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.186 0.814 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 21.311 6.837 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.040 3.960 3 C -0.329 4.329 4 C 0.399 3.601 5 O -0.413 6.413 6 O -0.245 6.245 7 C 0.036 3.964 8 H 0.128 0.872 9 C -0.227 4.227 10 H 0.151 0.849 11 C -0.176 4.176 12 C -0.020 4.020 13 O -0.284 6.284 14 C -0.016 4.016 15 H 0.116 0.884 16 C -0.046 4.046 17 C -0.188 4.188 18 C -0.198 4.198 19 C -0.105 4.105 20 N -0.111 5.111 21 N -0.085 5.085 22 C 0.105 3.895 23 C -0.587 4.587 24 H 0.100 0.900 25 C -0.123 4.123 26 N -0.517 5.517 27 Si 0.698 3.302 28 H -0.195 1.195 29 H -0.203 1.203 30 H -0.187 1.187 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.203 0.797 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.577 20.108 6.747 21.365 hybrid contribution -0.760 -0.146 0.287 0.825 sum 1.817 19.962 7.034 21.243 Atomic orbital electron populations 1.20707 0.86468 1.05468 1.03527 1.21446 0.94989 0.86267 0.93287 1.18783 0.93760 0.89179 1.31163 1.20102 0.83550 0.84916 0.71565 1.90754 1.17858 1.84240 1.48445 1.86578 1.38916 1.14445 1.84558 1.22955 0.98571 0.78843 0.96061 0.87192 1.25074 1.01963 1.01619 0.94082 0.84895 1.22547 0.96711 1.01070 0.97282 1.24128 0.95641 0.98608 0.83649 1.87818 1.60332 1.65094 1.15134 1.24011 0.87299 0.95602 0.94706 0.88430 1.22218 0.93384 0.95245 0.93787 1.21804 1.01348 0.92635 1.03058 1.21742 1.00857 1.02307 0.94899 1.23931 0.96645 0.92078 0.97805 1.77233 0.97729 1.12422 1.23716 1.48973 1.02877 1.07561 1.49094 1.20211 0.95867 0.73015 1.00371 1.21080 1.48369 0.99289 0.89941 0.89958 1.24790 0.94219 0.97363 0.95919 1.69861 1.44825 1.18190 1.18837 0.86904 0.79535 0.81080 0.82676 1.19452 1.20296 1.18738 0.90099 0.88403 0.89353 0.90274 0.89817 0.90275 0.91084 0.91502 0.91271 0.91042 0.91228 0.91892 0.91985 0.79730 0.92458 0.93274 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.71 9.34 36.00 0.34 -1.37 16 2 C 0.18 3.41 7.01 -81.59 -0.57 2.83 16 3 C -0.32 -5.61 6.13 -105.08 -0.64 -6.26 16 4 C 0.55 8.93 7.95 34.41 0.27 9.21 16 5 O -0.52 -9.14 14.05 -19.29 -0.27 -9.41 16 6 O -0.33 -4.46 7.22 -40.64 -0.29 -4.75 16 7 C 0.09 1.05 4.20 -40.35 -0.17 0.88 16 8 H 0.11 1.31 7.06 -51.93 -0.37 0.95 16 9 C -0.21 -2.16 4.30 -99.44 -0.43 -2.59 16 10 H 0.13 1.17 5.52 -51.93 -0.29 0.89 16 11 C -0.14 -1.42 6.71 -25.21 -0.17 -1.59 16 12 C 0.06 0.53 7.87 38.84 0.31 0.84 16 13 O -0.36 -4.34 11.34 -29.84 -0.34 -4.68 16 14 C 0.04 0.47 4.09 -40.01 -0.16 0.30 16 15 H 0.10 1.22 6.23 -51.93 -0.32 0.90 16 16 C -0.05 -0.44 1.59 -165.09 -0.26 -0.70 16 17 C -0.13 -0.98 8.79 37.16 0.33 -0.66 16 18 C -0.14 -1.27 9.22 37.16 0.34 -0.93 16 19 C 0.08 1.44 11.87 -16.97 -0.20 1.24 16 20 N -0.29 -6.07 12.50 30.87 0.39 -5.68 16 21 N -0.31 -6.62 3.56 -57.76 -0.21 -6.82 16 22 C 0.22 5.04 4.85 -5.19 -0.03 5.01 16 23 C -0.55 -14.65 9.94 -34.44 -0.34 -14.99 16 24 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 25 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 26 N -0.88 -25.34 13.96 55.43 0.77 -24.56 16 27 Si 0.87 19.28 27.47 -169.99 -4.67 14.61 16 28 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 30 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.10 1.59 6.51 -51.93 -0.34 1.25 16 33 H 0.09 1.51 7.70 -51.93 -0.40 1.11 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.99 7.81 -51.93 -0.41 0.58 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.47 8.04 -51.93 -0.42 0.05 16 40 H 0.07 0.53 5.95 -51.93 -0.31 0.22 16 41 H 0.07 0.70 7.51 -51.93 -0.39 0.31 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.19 2.51 8.06 -52.48 -0.42 2.08 16 45 H 0.06 1.30 7.20 -51.93 -0.37 0.92 16 46 H 0.05 1.01 7.06 -51.93 -0.37 0.64 16 47 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -30.68 378.17 -7.36 -38.03 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.95 Total: 4.23 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -1.49 Total: -6.66 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.95 Total: -37.07 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.90 Total: -18.84 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.67 Total: 14.61 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.68 -7.36 -38.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892716111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.150 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds