Wall clock time and date at job start Tue Mar 31 2020 20:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38132 * 126.29568 * 2 1 4 4 C 1.47291 * 126.42544 * 0.02562 * 3 2 1 5 5 O 1.21526 * 120.00004 * 359.97438 * 4 3 2 6 6 O 1.34755 * 119.99948 * 180.02562 * 4 3 2 7 7 C 1.45194 * 116.99975 * 179.97438 * 6 4 3 8 8 H 1.09001 * 113.49313 * 15.97150 * 7 6 4 9 9 C 1.50654 * 114.50115 * 241.88718 * 7 6 4 10 10 H 1.09001 * 114.94407 * 173.72831 * 9 7 6 11 11 C 1.52687 * 126.48737 * 17.91423 * 9 7 6 12 12 C 1.56140 * 100.01001 * 233.63318 * 11 9 7 13 13 O 1.45502 * 105.72555 * 23.26594 * 12 11 9 14 14 C 1.38975 * 106.82258 * 12.34706 * 13 12 11 15 15 H 1.08992 * 109.74436 * 75.37279 * 14 13 12 16 16 C 1.48990 * 135.72267 * 229.05945 * 14 13 12 17 17 C 1.53000 * 114.58229 * 25.89478 * 16 14 13 18 18 C 1.52999 * 114.57526 * 252.04503 * 16 14 13 19 19 C 1.41341 * 107.14495 * 179.97438 * 3 2 1 20 20 N 1.30429 * 108.01791 * 359.97438 * 19 3 2 21 21 N 1.34224 * 126.29883 * 179.97438 * 2 1 3 22 22 C 1.46500 * 125.74194 * 359.76436 * 21 2 1 23 23 C 1.50700 * 109.47430 * 89.99537 * 22 21 2 24 24 H 1.08006 * 119.99752 * 0.02562 * 23 22 21 25 25 C 1.37878 * 120.00024 * 179.97438 * 23 22 21 26 26 N 1.31519 * 119.99467 * 180.02562 * 25 23 22 27 27 Si 1.86795 * 120.00148 * 0.02562 * 25 23 22 28 28 H 1.48498 * 109.47273 * 90.00020 * 27 25 23 29 29 H 1.48496 * 109.47237 * 209.99913 * 27 25 23 30 30 H 1.48502 * 109.47018 * 330.00020 * 27 25 23 31 31 H 1.09000 * 109.47612 * 270.02578 * 1 2 3 32 32 H 1.08998 * 109.47042 * 30.02912 * 1 2 3 33 33 H 1.09002 * 109.46862 * 150.02802 * 1 2 3 34 34 H 1.09000 * 111.29864 * 115.93429 * 11 9 7 35 35 H 1.09001 * 111.33810 * 351.34443 * 11 9 7 36 36 H 1.09003 * 110.19564 * 264.19821 * 12 11 9 37 37 H 1.09002 * 110.26153 * 142.36667 * 12 11 9 38 38 H 1.09001 * 109.47121 * 140.85234 * 17 16 14 39 39 H 1.08996 * 109.47301 * 260.86106 * 17 16 14 40 40 H 1.09000 * 109.46842 * 20.85886 * 17 16 14 41 41 H 1.08997 * 109.47222 * 309.12348 * 18 16 14 42 42 H 1.08998 * 109.47202 * 69.12067 * 18 16 14 43 43 H 1.08997 * 109.47460 * 189.12114 * 18 16 14 44 44 H 1.08006 * 125.98726 * 180.02562 * 19 3 2 45 45 H 1.08995 * 109.47134 * 209.99752 * 22 21 2 46 46 H 1.09003 * 109.46896 * 329.99347 * 22 21 2 47 47 H 0.96994 * 119.99412 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5197 0.0005 5 8 0.7017 2.7874 0.0006 6 8 2.8014 3.5097 -0.0001 7 6 2.2981 4.8717 -0.0001 8 1 1.2462 4.9462 0.2755 9 6 2.6870 5.6814 -1.2095 10 1 2.2265 6.6675 -1.2700 11 6 3.1911 5.1360 -2.5436 12 6 4.5156 5.9504 -2.6866 13 8 4.8858 6.3419 -1.3350 14 6 4.0864 5.6047 -0.4696 15 1 4.4455 4.5767 -0.4224 16 6 3.2306 5.9083 0.7115 17 6 2.6822 7.3362 0.7500 18 6 3.8023 5.4362 2.0498 19 6 3.6598 0.6496 0.0006 20 7 3.6340 -0.6544 0.0015 21 7 2.3016 -1.0818 0.0005 22 6 1.8498 -2.4754 0.0060 23 6 1.6901 -2.9574 -1.4129 24 1 1.9041 -2.2922 -2.2365 25 6 1.2718 -4.2478 -1.6597 26 7 1.1329 -4.6684 -2.8980 27 14 0.9023 -5.3984 -0.2353 28 1 -0.5275 -5.2721 0.1451 29 1 1.1841 -6.7980 -0.6437 30 1 1.7568 -5.0398 0.9251 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8897 -0.5143 33 1 -0.3633 -0.8903 -0.5134 34 1 2.4968 5.3639 -3.3523 35 1 3.3887 4.0656 -2.4852 36 1 4.3492 6.8343 -3.3023 37 1 5.2958 5.3282 -3.1253 38 1 1.6550 7.3212 1.1144 39 1 3.2954 7.9430 1.4162 40 1 2.7056 7.7614 -0.2534 41 1 4.0877 4.3871 1.9732 42 1 4.6785 6.0336 2.3017 43 1 3.0480 5.5515 2.8282 44 1 4.5460 1.2670 0.0012 45 1 2.5861 -3.0939 0.5191 46 1 0.8929 -2.5451 0.5233 47 1 0.8383 -5.5761 -3.0716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892716111.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:07 Heat of formation + Delta-G solvation = 16.408095 kcal Electronic energy + Delta-G solvation = -29582.579409 eV Core-core repulsion = 25542.263094 eV Total energy + Delta-G solvation = -4040.316315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -43.37823 -42.43448 -40.55567 -38.01609 -36.58370 -35.80742 -34.05326 -33.01382 -32.86821 -30.22603 -29.75935 -28.71600 -28.35268 -26.02743 -25.04851 -24.13204 -23.93108 -22.11411 -21.17273 -20.54067 -19.90216 -19.30508 -18.91443 -17.76102 -17.59782 -17.13357 -16.81709 -16.61091 -16.22070 -15.85256 -15.70718 -15.42888 -15.26515 -15.03195 -14.59745 -14.50878 -14.27972 -13.95332 -13.85197 -13.73451 -13.46022 -13.22997 -13.10391 -13.09352 -12.92860 -12.82393 -12.58485 -12.53875 -12.40923 -12.18761 -11.97317 -11.88997 -11.86386 -11.70712 -11.36515 -11.01699 -10.92854 -10.58722 -10.36163 -10.07541 -9.71022 -8.44367 -6.57259 0.36438 1.11371 1.26203 1.34448 1.38421 1.46641 1.75168 2.01820 2.16643 2.24043 2.87943 3.00986 3.24649 3.55463 3.60712 3.71265 3.75857 3.88181 3.99767 4.04995 4.08816 4.21180 4.25353 4.36529 4.41260 4.45862 4.52950 4.58113 4.61698 4.70730 4.76017 4.81799 4.82756 4.92700 4.95825 4.98239 5.03452 5.05687 5.11951 5.14974 5.16737 5.28648 5.41022 5.45160 5.53168 5.75339 6.04426 6.14706 6.46085 6.63496 6.82926 7.06956 8.72029 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.002690 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.381112 B =10404.800877 C =10738.639882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.166 3.834 3 C -0.320 4.320 4 C 0.558 3.442 5 O -0.536 6.536 6 O -0.323 6.323 7 C 0.076 3.924 8 H 0.108 0.892 9 C -0.204 4.204 10 H 0.155 0.845 11 C -0.141 4.141 12 C 0.055 3.945 13 O -0.379 6.379 14 C 0.036 3.964 15 H 0.078 0.922 16 C -0.032 4.032 17 C -0.130 4.130 18 C -0.142 4.142 19 C 0.098 3.902 20 N -0.331 5.331 21 N -0.333 5.333 22 C 0.232 3.768 23 C -0.556 4.556 24 H 0.027 0.973 25 C 0.025 3.975 26 N -0.934 5.934 27 Si 0.949 3.051 28 H -0.250 1.250 29 H -0.279 1.279 30 H -0.242 1.242 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.219 0.781 45 H 0.059 0.941 46 H 0.077 0.923 47 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.616 23.025 8.914 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.030 3.970 3 C -0.333 4.333 4 C 0.405 3.595 5 O -0.427 6.427 6 O -0.240 6.240 7 C 0.020 3.980 8 H 0.126 0.874 9 C -0.222 4.222 10 H 0.172 0.828 11 C -0.179 4.179 12 C -0.020 4.020 13 O -0.299 6.299 14 C -0.022 4.022 15 H 0.095 0.905 16 C -0.033 4.033 17 C -0.187 4.187 18 C -0.199 4.199 19 C -0.090 4.090 20 N -0.149 5.149 21 N -0.109 5.109 22 C 0.113 3.887 23 C -0.594 4.594 24 H 0.045 0.955 25 C -0.176 4.176 26 N -0.572 5.572 27 Si 0.769 3.231 28 H -0.174 1.174 29 H -0.204 1.204 30 H -0.165 1.165 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.236 0.764 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.099 21.866 8.830 23.675 hybrid contribution -0.537 -0.497 -0.478 0.874 sum 1.563 21.368 8.352 22.996 Atomic orbital electron populations 1.20753 0.84860 1.04907 1.05104 1.21980 0.96186 0.86174 0.92694 1.19020 0.93797 0.89996 1.30529 1.19817 0.83524 0.84873 0.71246 1.90741 1.18418 1.84506 1.49066 1.86569 1.38128 1.15254 1.84000 1.23268 0.98966 0.77894 0.97834 0.87401 1.25222 1.01291 1.02102 0.93603 0.82812 1.22555 0.97542 0.99880 0.97922 1.24250 0.95181 0.99503 0.83096 1.87795 1.60899 1.65157 1.16017 1.23975 0.87606 0.94780 0.95828 0.90488 1.22261 0.91975 0.95770 0.93282 1.21840 1.02254 0.90908 1.03653 1.21760 1.01608 1.01556 0.94974 1.24478 0.97755 0.91312 0.95454 1.77174 0.97974 1.14092 1.25692 1.48843 1.03442 1.07489 1.51087 1.19987 0.97103 0.74034 0.97567 1.21177 1.48385 0.98949 0.90900 0.95500 1.25814 0.93555 0.99148 0.99079 1.70024 1.46402 1.19009 1.21785 0.85708 0.80584 0.77767 0.79007 1.17405 1.20426 1.16483 0.87362 0.88303 0.90392 0.89012 0.92044 0.88065 0.90924 0.90149 0.90162 0.90761 0.92683 0.90949 0.90844 0.76441 0.92301 0.90571 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.19 9.34 71.23 0.67 -2.52 16 2 C 0.17 6.36 7.01 42.17 0.30 6.66 16 3 C -0.32 -11.32 6.13 -20.16 -0.12 -11.44 16 4 C 0.56 17.76 7.95 70.20 0.56 18.32 16 5 O -0.54 -18.29 14.05 19.75 0.28 -18.02 16 6 O -0.32 -8.59 7.22 -56.65 -0.41 -9.00 16 7 C 0.08 1.64 4.20 21.77 0.09 1.73 16 8 H 0.11 2.41 7.06 -2.39 -0.02 2.39 16 9 C -0.20 -3.88 4.30 -16.51 -0.07 -3.95 16 10 H 0.15 2.29 5.52 -2.39 -0.01 2.28 16 11 C -0.14 -2.76 6.71 31.58 0.21 -2.55 16 12 C 0.05 0.97 7.87 73.07 0.57 1.55 16 13 O -0.38 -8.47 11.34 -129.70 -1.47 -9.94 16 14 C 0.04 0.76 4.09 21.99 0.09 0.85 16 15 H 0.08 1.91 6.23 -2.39 -0.01 1.90 16 16 C -0.03 -0.56 1.59 -59.04 -0.09 -0.65 16 17 C -0.13 -1.55 8.79 71.98 0.63 -0.92 16 18 C -0.14 -2.31 9.22 71.98 0.66 -1.65 16 19 C 0.10 3.36 11.87 85.66 1.02 4.38 16 20 N -0.33 -13.88 12.50 -56.25 -0.70 -14.58 16 21 N -0.33 -14.35 3.56 -336.66 -1.20 -15.55 16 22 C 0.23 10.44 4.85 85.63 0.42 10.85 16 23 C -0.56 -30.70 9.94 25.60 0.25 -30.45 16 24 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 25 C 0.02 1.33 5.47 84.65 0.46 1.80 16 26 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 27 Si 0.95 39.26 27.47 68.60 1.88 41.15 16 28 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 29 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 30 H -0.24 -9.12 6.54 99.48 0.65 -8.46 16 31 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.10 3.18 6.51 -2.39 -0.02 3.16 16 33 H 0.08 2.67 7.70 -2.39 -0.02 2.66 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.46 7.81 -2.39 -0.02 1.45 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.82 8.04 -2.39 -0.02 0.80 16 40 H 0.07 0.86 5.95 -2.39 -0.01 0.85 16 41 H 0.05 1.05 7.51 -2.39 -0.02 1.03 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.22 5.70 8.06 -2.91 -0.02 5.67 16 45 H 0.06 2.61 7.20 -2.39 -0.02 2.60 16 46 H 0.08 2.99 7.06 -2.39 -0.02 2.98 16 47 H 0.27 15.06 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -69.15 378.17 5.25 -63.90 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.93 Total: 25.31 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 5.64 Total: -8.00 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -1.60 Total: -85.41 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -1.60 Total: -36.95 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 1.88 Total: 41.15 kcal Total: -69.15 5.25 -63.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892716111.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.307 kcal (2) G-P(sol) polarization free energy of solvation -69.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds