Wall clock time and date at job start Tue Mar 31 2020 20:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.87629 * 2 1 4 4 O 1.42901 * 109.46560 * 64.56477 * 3 2 1 5 5 C 1.54330 * 110.01074 * 238.90465 * 2 1 3 6 6 C 1.55156 * 102.94380 * 262.70361 * 5 2 1 7 7 H 1.08996 * 111.00549 * 206.42553 * 6 5 2 8 8 O 1.42903 * 111.00443 * 82.56833 * 6 5 2 9 9 C 1.55132 * 101.48444 * 324.33451 * 6 5 2 10 10 N 1.47017 * 109.88480 * 121.02062 * 2 1 3 11 11 C 1.34776 * 125.64913 * 300.59510 * 10 2 1 12 12 O 1.21586 * 119.99951 * 359.97438 * 11 10 2 13 13 N 1.34774 * 120.00425 * 180.02562 * 11 10 2 14 14 C 1.39938 * 120.00205 * 185.31865 * 13 11 10 15 15 C 1.38874 * 120.07183 * 33.43246 * 14 13 11 16 16 C 1.38114 * 119.92954 * 180.21396 * 15 14 13 17 17 C 1.38271 * 120.07140 * 359.50399 * 16 15 14 18 18 C 1.50700 * 119.93348 * 180.27985 * 17 16 15 19 19 C 1.50705 * 109.47087 * 89.99987 * 18 17 16 20 20 H 1.08001 * 119.99753 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99689 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00543 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99549 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47246 * 89.99756 * 23 21 19 25 25 H 1.48504 * 109.47113 * 210.00109 * 23 21 19 26 26 H 1.48503 * 109.47238 * 329.99394 * 23 21 19 27 27 C 1.38288 * 120.14093 * 0.26330 * 17 16 15 28 28 C 1.38113 * 120.06877 * 359.97438 * 27 17 16 29 29 H 1.09005 * 109.46851 * 300.43363 * 1 2 3 30 30 H 1.09001 * 109.47089 * 60.43468 * 1 2 3 31 31 H 1.09002 * 109.47362 * 180.43880 * 1 2 3 32 32 H 1.08997 * 109.47031 * 184.56224 * 3 2 1 33 33 H 1.08998 * 109.47142 * 304.56610 * 3 2 1 34 34 H 0.96706 * 113.99576 * 180.02562 * 4 3 2 35 35 H 1.09004 * 110.71749 * 21.06789 * 5 2 1 36 36 H 1.08998 * 110.71945 * 144.33780 * 5 2 1 37 37 H 0.96698 * 114.00080 * 180.02562 * 8 6 5 38 38 H 1.09008 * 110.49309 * 278.45218 * 9 6 5 39 39 H 1.09001 * 110.34316 * 156.06166 * 9 6 5 40 40 H 0.96998 * 120.00083 * 5.31920 * 13 11 10 41 41 H 1.08006 * 120.02945 * 359.97438 * 15 14 13 42 42 H 1.07996 * 119.95900 * 179.79013 * 16 15 14 43 43 H 1.08992 * 109.47667 * 210.00371 * 18 17 16 44 44 H 1.09007 * 109.47048 * 330.00309 * 18 17 16 45 45 H 0.97001 * 120.00013 * 180.02562 * 22 21 19 46 46 H 1.08002 * 119.96205 * 179.97438 * 27 17 16 47 47 H 1.07994 * 120.03589 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0502 1.4389 0.0000 4 8 1.6679 2.0835 1.2167 5 6 2.0581 -0.7489 -1.2418 6 6 2.3575 -2.1680 -0.6905 7 1 3.1344 -2.6589 -1.2764 8 8 1.1704 -2.9626 -0.6497 9 6 2.8643 -1.8434 0.7393 10 7 2.0300 -0.7125 1.1848 11 6 1.7730 -0.3830 2.4661 12 8 1.0727 0.5786 2.7178 13 7 2.2931 -1.1186 3.4685 14 6 1.9376 -0.8455 4.7942 15 6 0.6605 -0.3885 5.0922 16 6 0.3142 -0.1157 6.4010 17 6 1.2342 -0.3069 7.4154 18 6 0.8510 -0.0142 8.8432 19 6 0.2749 -1.2561 9.4733 20 1 0.1947 -2.1663 8.8976 21 6 -0.1498 -1.2301 10.7848 22 7 -0.0526 -0.1216 11.4857 23 14 -0.8632 -2.7696 11.5660 24 1 0.2277 -3.5567 12.1950 25 1 -1.8562 -2.3849 12.6010 26 1 -1.5285 -3.5912 10.5231 27 6 2.5052 -0.7664 7.1226 28 6 2.8593 -1.0364 5.8152 29 1 -0.3633 0.5206 0.8861 30 1 -0.3633 0.5071 -0.8939 31 1 -0.3634 -1.0276 0.0079 32 1 3.1370 1.4323 -0.0817 33 1 1.6254 1.9788 -0.8462 34 1 1.9644 3.0013 1.2855 35 1 1.2961 -0.7904 -2.0201 36 1 2.9683 -0.2807 -1.6163 37 1 1.3080 -3.8581 -0.3115 38 1 3.9148 -1.5534 0.7151 39 1 2.7218 -2.7017 1.3959 40 1 2.9138 -1.8373 3.2711 41 1 -0.0599 -0.2429 4.3007 42 1 -0.6777 0.2430 6.6329 43 1 1.7342 0.2993 9.3995 44 1 0.1070 0.7823 8.8637 45 1 -0.3511 -0.1035 12.4085 46 1 3.2216 -0.9143 7.9171 47 1 3.8518 -1.3957 5.5871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932560042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:48 Heat of formation + Delta-G solvation = -86.668699 kcal Electronic energy + Delta-G solvation = -29313.136457 eV Core-core repulsion = 25268.350397 eV Total energy + Delta-G solvation = -4044.786060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.97025 -39.28833 -37.74431 -36.89019 -35.35418 -34.58839 -33.06656 -32.14262 -30.60260 -30.18187 -29.94985 -26.74631 -26.50275 -25.59241 -23.48537 -22.44112 -22.15936 -21.40434 -20.01281 -19.17386 -18.34339 -17.62578 -17.18202 -16.67996 -16.23104 -16.03052 -15.69997 -14.91536 -14.77910 -14.72784 -14.37689 -14.13441 -13.89379 -13.76457 -13.59056 -12.95004 -12.87025 -12.67395 -12.56465 -12.46245 -12.33974 -12.10137 -11.86750 -11.82211 -11.38047 -11.23352 -11.15945 -11.06334 -10.72396 -10.55414 -10.51790 -10.25134 -9.96237 -9.81916 -9.67824 -9.33341 -9.13125 -8.64414 -8.36236 -8.15338 -7.19730 -5.97341 -4.01122 2.09384 2.19895 2.53032 3.34253 3.40150 3.43123 3.45819 3.60502 3.78169 3.94426 4.11949 4.27120 4.45551 4.64444 4.67969 4.72266 4.86195 5.01804 5.08826 5.12831 5.22695 5.27722 5.33957 5.36452 5.52456 5.53331 5.64902 5.70247 5.91855 6.03453 6.11840 6.22270 6.30720 6.32731 6.47270 6.75265 6.83176 7.11731 7.15231 7.21572 7.29152 7.33911 7.60588 7.70711 7.85730 7.97112 7.98754 8.06014 8.40399 8.82984 9.04386 9.62196 11.12150 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.002450 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.924021 B =11426.125484 C =11874.679664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.190 3.810 3 C 0.066 3.934 4 O -0.522 6.522 5 C -0.118 4.118 6 C 0.094 3.906 7 H 0.080 0.920 8 O -0.551 6.551 9 C 0.064 3.936 10 N -0.622 5.622 11 C 0.715 3.285 12 O -0.521 6.521 13 N -0.686 5.686 14 C 0.131 3.869 15 C -0.117 4.117 16 C -0.106 4.106 17 C -0.048 4.048 18 C 0.049 3.951 19 C -0.509 4.509 20 H 0.057 0.943 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.107 4.107 28 C -0.150 4.150 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.361 0.639 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.381 0.619 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.394 0.606 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.027 0.973 44 H 0.028 0.972 45 H 0.261 0.739 46 H 0.120 0.880 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.188 -2.939 -29.692 31.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.105 3.895 3 C -0.013 4.013 4 O -0.324 6.324 5 C -0.155 4.155 6 C 0.034 3.966 7 H 0.098 0.902 8 O -0.357 6.357 9 C -0.060 4.060 10 N -0.362 5.362 11 C 0.418 3.582 12 O -0.392 6.392 13 N -0.334 5.334 14 C 0.038 3.962 15 C -0.137 4.137 16 C -0.125 4.125 17 C -0.048 4.048 18 C 0.012 3.988 19 C -0.547 4.547 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.126 4.126 28 C -0.171 4.171 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.207 0.793 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.229 0.771 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.228 0.772 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.138 0.862 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.034 -2.144 -29.410 30.562 hybrid contribution 0.693 -1.260 0.441 1.504 sum 8.727 -3.404 -28.968 30.445 Atomic orbital electron populations 1.22107 0.93263 1.02814 1.03011 1.20757 0.95377 0.89832 0.83551 1.22552 0.97220 0.93100 0.88465 1.87166 1.79895 1.28701 1.36675 1.22774 1.02819 0.93073 0.96883 1.22870 0.87554 0.92133 0.94002 0.90179 1.86553 1.32799 1.28496 1.87844 1.23076 0.95401 0.90653 0.96881 1.47501 1.53710 1.31268 1.03693 1.15369 0.81340 0.82532 0.79008 1.91003 1.40377 1.26980 1.80867 1.42557 1.49793 1.36768 1.04297 1.17270 0.93731 1.03739 0.81458 1.21000 0.94551 1.01261 0.96874 1.20973 0.99651 1.00389 0.91458 1.20652 0.92368 0.93817 0.97984 1.18330 0.97256 0.97336 0.85900 1.21090 1.40692 0.96504 0.96426 0.92486 1.25015 0.95957 0.96185 0.97263 1.69961 1.47698 1.26335 1.09436 0.86552 0.78919 0.83256 0.79058 1.20668 1.21213 1.19820 1.20830 0.96986 0.99969 0.94808 1.20672 0.97648 1.05914 0.92820 0.90079 0.92622 0.91748 0.94458 0.93494 0.79347 0.88559 0.89078 0.77108 0.90866 0.90597 0.77156 0.85817 0.86275 0.95428 0.95362 0.92915 0.86206 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.27 37.16 0.31 -1.48 16 2 C 0.19 1.86 0.79 -130.84 -0.10 1.76 16 3 C 0.07 0.63 6.03 37.16 0.22 0.85 16 4 O -0.52 -6.80 9.33 -59.94 -0.56 -7.36 16 5 C -0.12 -0.72 5.76 -24.89 -0.14 -0.86 16 6 C 0.09 0.51 4.43 -24.46 -0.11 0.40 16 7 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 8 O -0.55 -3.77 12.79 -35.23 -0.45 -4.22 16 9 C 0.06 0.44 6.29 -2.41 -0.02 0.42 16 10 N -0.62 -6.88 2.82 -161.30 -0.45 -7.33 16 11 C 0.72 10.84 7.60 -86.92 -0.66 10.18 16 12 O -0.52 -9.78 9.69 -19.42 -0.19 -9.97 16 13 N -0.69 -9.82 5.29 -14.22 -0.08 -9.90 16 14 C 0.13 2.33 6.28 -83.69 -0.53 1.81 16 15 C -0.12 -2.32 8.66 -39.39 -0.34 -2.66 16 16 C -0.11 -2.30 9.69 -39.61 -0.38 -2.68 16 17 C -0.05 -1.09 5.07 -104.59 -0.53 -1.62 16 18 C 0.05 1.30 5.10 -29.03 -0.15 1.15 16 19 C -0.51 -14.60 9.09 -34.44 -0.31 -14.91 16 20 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 23 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 28 C -0.15 -2.61 9.96 -39.39 -0.39 -3.00 16 29 H 0.08 1.23 6.43 -51.93 -0.33 0.90 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.79 7.44 -51.93 -0.39 0.41 16 32 H 0.04 0.31 8.06 -51.93 -0.42 -0.11 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.36 3.37 9.12 45.56 0.42 3.79 16 35 H 0.10 0.58 7.83 -51.93 -0.41 0.17 16 36 H 0.09 0.37 7.79 -51.93 -0.40 -0.03 16 37 H 0.38 1.18 9.12 45.56 0.42 1.60 16 38 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 39 H 0.08 0.45 7.38 -51.93 -0.38 0.07 16 40 H 0.39 4.30 7.36 -40.82 -0.30 4.00 16 41 H 0.12 2.51 6.43 -52.48 -0.34 2.17 16 42 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 43 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 44 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 47 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -36.82 378.14 -9.41 -46.23 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.48 Total: 7.84 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -3.62 Total: -11.64 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.21 Total: -43.48 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.20 Total: -21.55 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.82 -9.41 -46.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932560042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.439 kcal (2) G-P(sol) polarization free energy of solvation -36.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds