Wall clock time and date at job start Tue Mar 31 2020 20:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.87629 * 2 1 4 4 O 1.42901 * 109.46560 * 64.56477 * 3 2 1 5 5 C 1.54330 * 110.01074 * 238.90465 * 2 1 3 6 6 C 1.55156 * 102.94380 * 262.70361 * 5 2 1 7 7 H 1.08996 * 111.00549 * 206.42553 * 6 5 2 8 8 O 1.42903 * 111.00443 * 82.56833 * 6 5 2 9 9 C 1.55132 * 101.48444 * 324.33451 * 6 5 2 10 10 N 1.47017 * 109.88480 * 121.02062 * 2 1 3 11 11 C 1.34776 * 125.64913 * 300.59510 * 10 2 1 12 12 O 1.21586 * 119.99951 * 359.97438 * 11 10 2 13 13 N 1.34774 * 120.00425 * 180.02562 * 11 10 2 14 14 C 1.39938 * 120.00205 * 185.31865 * 13 11 10 15 15 C 1.38874 * 120.07183 * 33.43246 * 14 13 11 16 16 C 1.38114 * 119.92954 * 180.21396 * 15 14 13 17 17 C 1.38271 * 120.07140 * 359.50399 * 16 15 14 18 18 C 1.50700 * 119.93348 * 180.27985 * 17 16 15 19 19 C 1.50705 * 109.47087 * 89.99987 * 18 17 16 20 20 H 1.08001 * 119.99753 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99689 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00543 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99549 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47246 * 89.99756 * 23 21 19 25 25 H 1.48504 * 109.47113 * 210.00109 * 23 21 19 26 26 H 1.48503 * 109.47238 * 329.99394 * 23 21 19 27 27 C 1.38288 * 120.14093 * 0.26330 * 17 16 15 28 28 C 1.38113 * 120.06877 * 359.97438 * 27 17 16 29 29 H 1.09005 * 109.46851 * 300.43363 * 1 2 3 30 30 H 1.09001 * 109.47089 * 60.43468 * 1 2 3 31 31 H 1.09002 * 109.47362 * 180.43880 * 1 2 3 32 32 H 1.08997 * 109.47031 * 184.56224 * 3 2 1 33 33 H 1.08998 * 109.47142 * 304.56610 * 3 2 1 34 34 H 0.96706 * 113.99576 * 180.02562 * 4 3 2 35 35 H 1.09004 * 110.71749 * 21.06789 * 5 2 1 36 36 H 1.08998 * 110.71945 * 144.33780 * 5 2 1 37 37 H 0.96698 * 114.00080 * 180.02562 * 8 6 5 38 38 H 1.09008 * 110.49309 * 278.45218 * 9 6 5 39 39 H 1.09001 * 110.34316 * 156.06166 * 9 6 5 40 40 H 0.96998 * 120.00083 * 5.31920 * 13 11 10 41 41 H 1.08006 * 120.02945 * 359.97438 * 15 14 13 42 42 H 1.07996 * 119.95900 * 179.79013 * 16 15 14 43 43 H 1.08992 * 109.47667 * 210.00371 * 18 17 16 44 44 H 1.09007 * 109.47048 * 330.00309 * 18 17 16 45 45 H 0.97001 * 120.00013 * 180.02562 * 22 21 19 46 46 H 1.08002 * 119.96205 * 179.97438 * 27 17 16 47 47 H 1.07994 * 120.03589 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0502 1.4389 0.0000 4 8 1.6679 2.0835 1.2167 5 6 2.0581 -0.7489 -1.2418 6 6 2.3575 -2.1680 -0.6905 7 1 3.1344 -2.6589 -1.2764 8 8 1.1704 -2.9626 -0.6497 9 6 2.8643 -1.8434 0.7393 10 7 2.0300 -0.7125 1.1848 11 6 1.7730 -0.3830 2.4661 12 8 1.0727 0.5786 2.7178 13 7 2.2931 -1.1186 3.4685 14 6 1.9376 -0.8455 4.7942 15 6 0.6605 -0.3885 5.0922 16 6 0.3142 -0.1157 6.4010 17 6 1.2342 -0.3069 7.4154 18 6 0.8510 -0.0142 8.8432 19 6 0.2749 -1.2561 9.4733 20 1 0.1947 -2.1663 8.8976 21 6 -0.1498 -1.2301 10.7848 22 7 -0.0526 -0.1216 11.4857 23 14 -0.8632 -2.7696 11.5660 24 1 0.2277 -3.5567 12.1950 25 1 -1.8562 -2.3849 12.6010 26 1 -1.5285 -3.5912 10.5231 27 6 2.5052 -0.7664 7.1226 28 6 2.8593 -1.0364 5.8152 29 1 -0.3633 0.5206 0.8861 30 1 -0.3633 0.5071 -0.8939 31 1 -0.3634 -1.0276 0.0079 32 1 3.1370 1.4323 -0.0817 33 1 1.6254 1.9788 -0.8462 34 1 1.9644 3.0013 1.2855 35 1 1.2961 -0.7904 -2.0201 36 1 2.9683 -0.2807 -1.6163 37 1 1.3080 -3.8581 -0.3115 38 1 3.9148 -1.5534 0.7151 39 1 2.7218 -2.7017 1.3959 40 1 2.9138 -1.8373 3.2711 41 1 -0.0599 -0.2429 4.3007 42 1 -0.6777 0.2430 6.6329 43 1 1.7342 0.2993 9.3995 44 1 0.1070 0.7823 8.8637 45 1 -0.3511 -0.1035 12.4085 46 1 3.2216 -0.9143 7.9171 47 1 3.8518 -1.3957 5.5871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932560042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:47 Heat of formation + Delta-G solvation = -114.419845 kcal Electronic energy + Delta-G solvation = -29314.339837 eV Core-core repulsion = 25268.350397 eV Total energy + Delta-G solvation = -4045.989440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.89730 -40.46968 -38.96165 -37.63784 -36.15106 -35.97891 -34.95826 -33.25338 -31.79829 -31.74648 -31.05924 -28.31822 -27.54369 -26.27646 -25.22699 -23.83712 -23.32027 -22.33675 -21.42946 -20.24044 -19.04868 -18.55785 -18.45710 -17.99151 -17.75720 -16.92545 -16.76174 -16.53043 -15.97629 -15.88951 -15.35930 -15.04327 -14.98889 -14.85510 -14.57702 -14.51119 -14.28282 -14.24373 -13.64782 -13.43562 -13.35067 -13.25471 -13.09813 -13.00475 -12.82805 -12.59444 -12.45046 -12.42410 -12.04139 -11.95736 -11.66679 -11.59775 -11.48460 -11.05543 -10.93379 -10.75198 -10.65832 -10.58928 -9.73357 -9.51304 -8.75348 -8.16402 -6.31886 0.54005 0.60382 1.39842 1.41768 1.53165 1.54383 2.28455 2.41887 2.95216 3.06494 3.11875 3.22804 3.29920 3.64301 3.69780 4.02351 4.07343 4.15459 4.17890 4.28374 4.40309 4.45935 4.54272 4.56776 4.62704 4.66461 4.68579 4.69592 4.77671 4.86220 4.91854 5.02613 5.07344 5.14198 5.26689 5.34579 5.37453 5.45002 5.55634 5.60976 5.67102 5.77672 6.10282 6.11464 6.15843 6.30090 6.80755 6.92493 7.00784 7.03848 7.36419 7.72565 8.91081 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.002450 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.924021 B =11426.125484 C =11874.679664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.180 3.820 3 C 0.062 3.938 4 O -0.557 6.557 5 C -0.111 4.111 6 C 0.099 3.901 7 H 0.119 0.881 8 O -0.576 6.576 9 C 0.054 3.946 10 N -0.619 5.619 11 C 0.706 3.294 12 O -0.565 6.565 13 N -0.675 5.675 14 C 0.148 3.852 15 C -0.124 4.124 16 C -0.118 4.118 17 C -0.078 4.078 18 C 0.059 3.941 19 C -0.527 4.527 20 H 0.055 0.945 21 C 0.002 3.998 22 N -0.932 5.932 23 Si 0.968 3.032 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.267 1.267 27 C -0.109 4.109 28 C -0.133 4.133 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.371 0.629 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.396 0.604 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.415 0.585 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.007 0.993 44 H -0.003 1.003 45 H 0.265 0.735 46 H 0.127 0.873 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.628 -5.473 -32.511 34.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.094 3.906 3 C -0.017 4.017 4 O -0.361 6.361 5 C -0.149 4.149 6 C 0.040 3.960 7 H 0.137 0.863 8 O -0.385 6.385 9 C -0.068 4.068 10 N -0.357 5.357 11 C 0.408 3.592 12 O -0.439 6.439 13 N -0.325 5.325 14 C 0.053 3.947 15 C -0.144 4.144 16 C -0.137 4.137 17 C -0.079 4.079 18 C 0.022 3.978 19 C -0.565 4.565 20 H 0.073 0.927 21 C -0.196 4.196 22 N -0.572 5.572 23 Si 0.792 3.208 24 H -0.193 1.193 25 H -0.206 1.206 26 H -0.191 1.191 27 C -0.128 4.128 28 C -0.154 4.154 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.218 0.782 35 H 0.117 0.883 36 H 0.138 0.862 37 H 0.246 0.754 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.252 0.748 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.025 0.975 44 H 0.015 0.985 45 H 0.074 0.926 46 H 0.145 0.855 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.518 -4.725 -32.296 34.293 hybrid contribution -0.053 -0.429 1.152 1.231 sum 10.465 -5.155 -31.144 33.257 Atomic orbital electron populations 1.22007 0.95366 1.01481 1.01642 1.21057 0.93954 0.90788 0.84765 1.22744 0.98282 0.92854 0.87839 1.87144 1.80577 1.29743 1.38672 1.22835 1.03997 0.93246 0.94824 1.23021 0.87913 0.91846 0.93243 0.86338 1.86524 1.34120 1.29799 1.88027 1.23473 0.95935 0.89383 0.98014 1.47517 1.53460 1.32297 1.02449 1.15622 0.81046 0.82195 0.80311 1.90990 1.42096 1.28927 1.81931 1.42378 1.50028 1.37283 1.02779 1.17325 0.92658 1.01377 0.83346 1.20929 0.95841 1.02090 0.95572 1.20868 0.99174 1.01388 0.92284 1.20348 0.94383 0.97264 0.95910 1.18070 0.95317 0.95924 0.88516 1.21395 1.41074 0.97008 0.97002 0.92661 1.25962 0.96136 0.99691 0.97780 1.70091 1.48540 1.28647 1.09912 0.85411 0.78384 0.78983 0.78062 1.19303 1.20578 1.19147 1.20943 0.95765 0.99511 0.96588 1.20959 0.99244 1.04109 0.91043 0.94431 0.90994 0.92880 0.92768 0.91729 0.78234 0.88335 0.86178 0.75417 0.88437 0.89701 0.74755 0.86669 0.87615 0.97470 0.98487 0.92586 0.85466 0.82572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.27 71.98 0.60 -2.81 16 2 C 0.18 3.17 0.79 3.96 0.00 3.17 16 3 C 0.06 1.06 6.03 71.98 0.43 1.50 16 4 O -0.56 -14.61 9.33 -125.35 -1.17 -15.78 16 5 C -0.11 -0.93 5.76 31.78 0.18 -0.75 16 6 C 0.10 0.64 4.43 32.06 0.14 0.78 16 7 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 8 O -0.58 -6.18 12.79 -148.98 -1.91 -8.08 16 9 C 0.05 0.52 6.29 86.93 0.55 1.06 16 10 N -0.62 -12.36 2.82 -782.50 -2.21 -14.56 16 11 C 0.71 20.72 7.60 179.06 1.36 22.08 16 12 O -0.56 -21.71 9.69 19.64 0.19 -21.52 16 13 N -0.67 -17.85 5.29 -317.18 -1.68 -19.53 16 14 C 0.15 5.07 6.28 38.15 0.24 5.31 16 15 C -0.12 -5.07 8.66 22.39 0.19 -4.88 16 16 C -0.12 -5.42 9.69 22.25 0.22 -5.20 16 17 C -0.08 -3.74 5.07 -19.84 -0.10 -3.84 16 18 C 0.06 3.32 5.10 29.10 0.15 3.47 16 19 C -0.53 -31.27 9.09 25.60 0.23 -31.04 16 20 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 21 C 0.00 0.13 5.46 84.65 0.46 0.59 16 22 N -0.93 -57.86 13.29 21.45 0.28 -57.58 16 23 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 C -0.11 -4.39 9.69 22.25 0.22 -4.17 16 28 C -0.13 -4.32 9.96 22.39 0.22 -4.09 16 29 H 0.04 1.20 6.43 -2.38 -0.02 1.18 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.31 7.44 -2.39 -0.02 1.29 16 32 H 0.05 0.74 8.06 -2.39 -0.02 0.72 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.37 7.12 9.12 -74.05 -0.68 6.45 16 35 H 0.10 0.83 7.83 -2.39 -0.02 0.82 16 36 H 0.12 0.34 7.79 -2.39 -0.02 0.32 16 37 H 0.40 1.29 9.12 -74.06 -0.68 0.61 16 38 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.08 0.67 7.38 -2.39 -0.02 0.65 16 40 H 0.41 7.50 7.36 -92.71 -0.68 6.82 16 41 H 0.12 4.91 6.43 -2.91 -0.02 4.89 16 42 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 43 H 0.01 0.41 8.08 -2.39 -0.02 0.40 16 44 H 0.00 -0.20 8.08 -2.38 -0.02 -0.22 16 45 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 47 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -85.12 378.14 -0.38 -85.50 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -1.02 Total: 22.87 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 5.10 Total: -18.80 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -3.60 Total: -91.68 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -2.89 Total: -45.39 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -85.12 -0.38 -85.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932560042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.915 kcal (2) G-P(sol) polarization free energy of solvation -85.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds