Wall clock time and date at job start Tue Mar 31 2020 20:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.87186 * 2 1 4 4 O 1.42895 * 109.47336 * 301.01376 * 3 2 1 5 5 C 1.54314 * 109.88316 * 121.01882 * 2 1 3 6 6 C 1.55157 * 102.94231 * 97.37988 * 5 2 1 7 7 H 1.08999 * 111.00340 * 277.42330 * 6 5 2 8 8 O 1.42904 * 111.00531 * 153.57892 * 6 5 2 9 9 C 1.54903 * 101.58372 * 35.49969 * 6 5 2 10 10 N 1.47028 * 110.00882 * 238.90601 * 2 1 3 11 11 C 1.34776 * 125.65109 * 59.43160 * 10 2 1 12 12 O 1.21590 * 119.99625 * 359.97438 * 11 10 2 13 13 N 1.34779 * 120.00060 * 179.97438 * 11 10 2 14 14 C 1.39935 * 119.99745 * 174.67791 * 13 11 10 15 15 C 1.38869 * 120.07231 * 326.56320 * 14 13 11 16 16 C 1.38115 * 119.92625 * 179.76862 * 15 14 13 17 17 C 1.38275 * 120.07568 * 0.51320 * 16 15 14 18 18 C 1.50694 * 119.93591 * 179.76412 * 17 16 15 19 19 C 1.50704 * 109.47376 * 269.97918 * 18 17 16 20 20 H 1.08004 * 119.99631 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00177 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00064 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99775 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46880 * 90.00858 * 23 21 19 25 25 H 1.48505 * 109.47163 * 210.00319 * 23 21 19 26 26 H 1.48496 * 109.47591 * 330.00626 * 23 21 19 27 27 C 1.38291 * 120.13729 * 359.74427 * 17 16 15 28 28 C 1.38106 * 120.06795 * 359.97438 * 27 17 16 29 29 H 1.09002 * 109.47205 * 59.29543 * 1 2 3 30 30 H 1.08996 * 109.47593 * 179.29451 * 1 2 3 31 31 H 1.08997 * 109.47043 * 299.30313 * 1 2 3 32 32 H 1.09001 * 109.46742 * 61.02275 * 3 2 1 33 33 H 1.09005 * 109.46667 * 181.01442 * 3 2 1 34 34 H 0.96700 * 113.99868 * 179.97438 * 4 3 2 35 35 H 1.08998 * 110.72121 * 215.74289 * 5 2 1 36 36 H 1.09000 * 110.72385 * 338.83886 * 5 2 1 37 37 H 0.96692 * 113.99601 * 179.97438 * 8 6 5 38 38 H 1.09005 * 110.36577 * 81.82998 * 9 6 5 39 39 H 1.09001 * 110.36906 * 204.04125 * 9 6 5 40 40 H 0.96994 * 119.99311 * 354.67635 * 13 11 10 41 41 H 1.07994 * 120.03254 * 0.02562 * 15 14 13 42 42 H 1.08009 * 119.96008 * 180.25464 * 16 15 14 43 43 H 1.09000 * 109.46874 * 29.97717 * 18 17 16 44 44 H 1.08996 * 109.47550 * 149.97995 * 18 17 16 45 45 H 0.97002 * 119.99781 * 179.97438 * 22 21 19 46 46 H 1.07996 * 119.96362 * 180.02562 * 27 17 16 47 47 H 1.07999 * 120.03767 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4390 0.0000 4 8 1.5592 2.1229 -1.1546 5 6 2.0548 -0.7478 1.2436 6 6 2.3557 -2.1673 0.6943 7 1 1.4504 -2.7735 0.6614 8 8 3.3723 -2.8103 1.4658 9 6 2.8617 -1.8472 -0.7343 10 7 2.0331 -0.7135 -1.1830 11 6 1.7785 -0.3856 -2.4653 12 8 1.0772 0.5746 -2.7195 13 7 2.3013 -1.1221 -3.4657 14 6 1.9483 -0.8508 -4.7924 15 6 0.6715 -0.3953 -5.0935 16 6 0.3279 -0.1239 -6.4034 17 6 1.2501 -0.3155 -7.4157 18 6 0.8701 -0.0235 -8.8444 19 6 0.2960 -1.2658 -9.4755 20 1 0.2148 -2.1759 -8.8997 21 6 -0.1257 -1.2405 -10.7880 22 7 -0.0264 -0.1324 -11.4893 23 14 -0.8367 -2.7806 -11.5704 24 1 -2.3063 -2.8098 -11.3589 25 1 -0.5461 -2.7753 -13.0267 26 1 -0.2229 -3.9808 -10.9476 27 6 2.5208 -0.7741 -7.1197 28 6 2.8724 -1.0418 -5.8112 29 1 -0.3634 0.5247 -0.8836 30 1 -0.3634 -1.0275 -0.0127 31 1 -0.3633 0.5030 0.8961 32 1 1.7053 1.9498 0.8990 33 1 3.1400 1.4313 -0.0182 34 1 1.8496 3.0430 -1.2198 35 1 2.9641 -0.2793 1.6202 36 1 1.2919 -0.7860 2.0212 37 1 3.5939 -3.7005 1.1602 38 1 3.9134 -1.5618 -0.7091 39 1 2.7182 -2.7067 -1.3891 40 1 2.9221 -1.8401 -3.2660 41 1 -0.0506 -0.2494 -4.3038 42 1 -0.6638 0.2343 -6.6378 43 1 0.1260 0.7726 -8.8670 44 1 1.7546 0.2901 -9.3989 45 1 -0.3227 -0.1148 -12.4128 46 1 3.2390 -0.9224 -7.9125 47 1 3.8650 -1.3995 -5.5806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932560044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:52 Heat of formation + Delta-G solvation = -88.617508 kcal Electronic energy + Delta-G solvation = -29106.992372 eV Core-core repulsion = 25062.121806 eV Total energy + Delta-G solvation = -4044.870567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.02698 -39.32247 -37.81723 -37.02255 -35.63111 -34.65231 -33.10334 -32.20555 -30.48183 -30.21364 -29.94050 -26.93064 -26.54075 -25.60737 -23.50562 -22.47136 -22.19579 -21.46434 -20.05064 -19.26253 -18.07957 -17.98245 -17.23388 -16.89079 -16.26758 -16.12784 -15.58904 -15.00386 -14.83721 -14.78346 -14.16482 -14.07495 -14.00232 -13.96882 -13.67186 -13.34354 -12.98604 -12.74382 -12.70062 -12.49767 -12.34950 -12.19051 -11.90873 -11.50811 -11.46108 -11.34036 -11.22406 -11.13694 -10.75224 -10.66101 -10.53975 -10.29629 -10.01202 -9.86711 -9.72715 -9.36681 -9.16724 -8.77863 -8.37746 -8.18504 -7.23653 -5.98898 -4.02730 2.05136 2.16348 2.40628 3.32904 3.33289 3.39266 3.43131 3.45242 3.83112 4.03931 4.04504 4.30129 4.43384 4.45946 4.65071 4.66617 4.77032 4.98494 5.08460 5.11508 5.17632 5.32635 5.34926 5.36319 5.41829 5.49729 5.54534 5.66630 5.72379 5.92677 6.06113 6.18153 6.24034 6.29721 6.35989 6.70543 6.78080 7.03031 7.07225 7.15544 7.26304 7.30751 7.58624 7.66365 7.82487 7.94517 7.97105 7.97932 8.38546 8.73570 9.02720 9.60638 11.10615 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021413 B = 0.002380 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.321716 B =11760.274529 C =12268.019663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.188 3.812 3 C 0.070 3.930 4 O -0.525 6.525 5 C -0.115 4.115 6 C 0.095 3.905 7 H 0.078 0.922 8 O -0.556 6.556 9 C 0.065 3.935 10 N -0.625 5.625 11 C 0.714 3.286 12 O -0.520 6.520 13 N -0.685 5.685 14 C 0.129 3.871 15 C -0.117 4.117 16 C -0.106 4.106 17 C -0.047 4.047 18 C 0.048 3.952 19 C -0.509 4.509 20 H 0.057 0.943 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 C -0.107 4.107 28 C -0.149 4.149 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.365 0.635 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.384 0.616 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.396 0.604 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.261 0.739 46 H 0.120 0.880 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.438 -2.868 28.866 29.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.103 3.897 3 C -0.010 4.010 4 O -0.328 6.328 5 C -0.153 4.153 6 C 0.035 3.965 7 H 0.096 0.904 8 O -0.361 6.361 9 C -0.059 4.059 10 N -0.367 5.367 11 C 0.416 3.584 12 O -0.392 6.392 13 N -0.333 5.333 14 C 0.036 3.964 15 C -0.137 4.137 16 C -0.125 4.125 17 C -0.047 4.047 18 C 0.012 3.988 19 C -0.547 4.547 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.126 4.126 28 C -0.169 4.169 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.210 0.790 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.231 0.769 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.230 0.770 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.138 0.862 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.532 -2.064 28.678 29.485 hybrid contribution 0.408 -1.302 -0.547 1.470 sum 6.940 -3.366 28.131 29.169 Atomic orbital electron populations 1.22136 0.93221 1.02131 1.03926 1.20795 0.95183 0.90528 0.83238 1.22475 0.96841 0.92315 0.89386 1.87067 1.75186 1.27631 1.42903 1.22669 1.02782 0.93545 0.96302 1.22855 0.90558 0.94046 0.89034 0.90420 1.86520 1.58388 1.34231 1.56935 1.22976 0.96154 0.90233 0.96550 1.47493 1.54130 1.31281 1.03780 1.15399 0.81384 0.82608 0.78962 1.91025 1.40333 1.27013 1.80792 1.42564 1.49662 1.36793 1.04294 1.17271 0.93788 1.03941 0.81372 1.20989 0.94534 1.01294 0.96868 1.20976 0.99666 1.00400 0.91450 1.20663 0.92350 0.93698 0.98019 1.18333 0.97295 0.97348 0.85866 1.21084 1.40812 0.96494 0.96355 0.92494 1.25016 0.95945 0.96205 0.97251 1.69961 1.47583 1.26421 1.09429 0.86550 0.79435 0.83415 0.78368 1.20631 1.21218 1.19850 1.20838 0.97011 0.99916 0.94795 1.20683 0.97651 1.05790 0.92820 0.89393 0.92801 0.91995 0.93329 0.94163 0.79011 0.89333 0.88871 0.76852 0.90768 0.90665 0.77018 0.85808 0.86244 0.95357 0.95396 0.92902 0.86163 0.87114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.22 37.16 0.31 -1.25 16 2 C 0.19 1.74 0.79 -130.84 -0.10 1.63 16 3 C 0.07 0.65 5.98 37.16 0.22 0.87 16 4 O -0.53 -6.55 9.42 -59.65 -0.56 -7.11 16 5 C -0.12 -0.75 5.75 -24.90 -0.14 -0.89 16 6 C 0.10 0.57 4.43 -24.59 -0.11 0.46 16 7 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 8 O -0.56 -3.10 13.47 -35.23 -0.47 -3.57 16 9 C 0.07 0.46 6.27 -2.53 -0.02 0.45 16 10 N -0.63 -6.65 2.82 -161.44 -0.46 -7.11 16 11 C 0.71 10.42 7.70 -86.92 -0.67 9.75 16 12 O -0.52 -9.40 9.81 -19.13 -0.19 -9.59 16 13 N -0.69 -9.53 5.29 -14.22 -0.08 -9.60 16 14 C 0.13 2.25 6.28 -83.69 -0.53 1.72 16 15 C -0.12 -2.26 8.66 -39.39 -0.34 -2.60 16 16 C -0.11 -2.26 9.69 -39.61 -0.38 -2.64 16 17 C -0.05 -1.05 5.07 -104.59 -0.53 -1.58 16 18 C 0.05 1.28 5.10 -29.04 -0.15 1.13 16 19 C -0.51 -14.49 9.09 -34.44 -0.31 -14.80 16 20 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 23 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 C -0.11 -2.14 9.69 -39.61 -0.38 -2.52 16 28 C -0.15 -2.55 9.96 -39.39 -0.39 -2.94 16 29 H 0.09 1.21 6.32 -51.93 -0.33 0.88 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.36 3.22 9.12 45.56 0.42 3.64 16 35 H 0.09 0.56 7.85 -51.93 -0.41 0.16 16 36 H 0.09 0.49 7.83 -51.93 -0.41 0.08 16 37 H 0.38 0.57 9.12 45.56 0.42 0.98 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.44 7.39 -51.93 -0.38 0.06 16 40 H 0.40 4.20 7.36 -40.82 -0.30 3.90 16 41 H 0.12 2.41 6.42 -52.49 -0.34 2.08 16 42 H 0.12 2.49 8.06 -52.48 -0.42 2.07 16 43 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 47 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -35.86 379.75 -9.46 -45.33 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.52 Total: 6.94 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -3.63 Total: -11.69 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.21 Total: -42.80 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -1.22 Total: -20.27 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.86 -9.46 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932560044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.290 kcal (2) G-P(sol) polarization free energy of solvation -35.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds