Wall clock time and date at job start Tue Mar 31 2020 20:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.87186 * 2 1 4 4 O 1.42895 * 109.47336 * 301.01376 * 3 2 1 5 5 C 1.54314 * 109.88316 * 121.01882 * 2 1 3 6 6 C 1.55157 * 102.94231 * 97.37988 * 5 2 1 7 7 H 1.08999 * 111.00340 * 277.42330 * 6 5 2 8 8 O 1.42904 * 111.00531 * 153.57892 * 6 5 2 9 9 C 1.54903 * 101.58372 * 35.49969 * 6 5 2 10 10 N 1.47028 * 110.00882 * 238.90601 * 2 1 3 11 11 C 1.34776 * 125.65109 * 59.43160 * 10 2 1 12 12 O 1.21590 * 119.99625 * 359.97438 * 11 10 2 13 13 N 1.34779 * 120.00060 * 179.97438 * 11 10 2 14 14 C 1.39935 * 119.99745 * 174.67791 * 13 11 10 15 15 C 1.38869 * 120.07231 * 326.56320 * 14 13 11 16 16 C 1.38115 * 119.92625 * 179.76862 * 15 14 13 17 17 C 1.38275 * 120.07568 * 0.51320 * 16 15 14 18 18 C 1.50694 * 119.93591 * 179.76412 * 17 16 15 19 19 C 1.50704 * 109.47376 * 269.97918 * 18 17 16 20 20 H 1.08004 * 119.99631 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00177 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00064 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99775 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46880 * 90.00858 * 23 21 19 25 25 H 1.48505 * 109.47163 * 210.00319 * 23 21 19 26 26 H 1.48496 * 109.47591 * 330.00626 * 23 21 19 27 27 C 1.38291 * 120.13729 * 359.74427 * 17 16 15 28 28 C 1.38106 * 120.06795 * 359.97438 * 27 17 16 29 29 H 1.09002 * 109.47205 * 59.29543 * 1 2 3 30 30 H 1.08996 * 109.47593 * 179.29451 * 1 2 3 31 31 H 1.08997 * 109.47043 * 299.30313 * 1 2 3 32 32 H 1.09001 * 109.46742 * 61.02275 * 3 2 1 33 33 H 1.09005 * 109.46667 * 181.01442 * 3 2 1 34 34 H 0.96700 * 113.99868 * 179.97438 * 4 3 2 35 35 H 1.08998 * 110.72121 * 215.74289 * 5 2 1 36 36 H 1.09000 * 110.72385 * 338.83886 * 5 2 1 37 37 H 0.96692 * 113.99601 * 179.97438 * 8 6 5 38 38 H 1.09005 * 110.36577 * 81.82998 * 9 6 5 39 39 H 1.09001 * 110.36906 * 204.04125 * 9 6 5 40 40 H 0.96994 * 119.99311 * 354.67635 * 13 11 10 41 41 H 1.07994 * 120.03254 * 0.02562 * 15 14 13 42 42 H 1.08009 * 119.96008 * 180.25464 * 16 15 14 43 43 H 1.09000 * 109.46874 * 29.97717 * 18 17 16 44 44 H 1.08996 * 109.47550 * 149.97995 * 18 17 16 45 45 H 0.97002 * 119.99781 * 179.97438 * 22 21 19 46 46 H 1.07996 * 119.96362 * 180.02562 * 27 17 16 47 47 H 1.07999 * 120.03767 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4390 0.0000 4 8 1.5592 2.1229 -1.1546 5 6 2.0548 -0.7478 1.2436 6 6 2.3557 -2.1673 0.6943 7 1 1.4504 -2.7735 0.6614 8 8 3.3723 -2.8103 1.4658 9 6 2.8617 -1.8472 -0.7343 10 7 2.0331 -0.7135 -1.1830 11 6 1.7785 -0.3856 -2.4653 12 8 1.0772 0.5746 -2.7195 13 7 2.3013 -1.1221 -3.4657 14 6 1.9483 -0.8508 -4.7924 15 6 0.6715 -0.3953 -5.0935 16 6 0.3279 -0.1239 -6.4034 17 6 1.2501 -0.3155 -7.4157 18 6 0.8701 -0.0235 -8.8444 19 6 0.2960 -1.2658 -9.4755 20 1 0.2148 -2.1759 -8.8997 21 6 -0.1257 -1.2405 -10.7880 22 7 -0.0264 -0.1324 -11.4893 23 14 -0.8367 -2.7806 -11.5704 24 1 -2.3063 -2.8098 -11.3589 25 1 -0.5461 -2.7753 -13.0267 26 1 -0.2229 -3.9808 -10.9476 27 6 2.5208 -0.7741 -7.1197 28 6 2.8724 -1.0418 -5.8112 29 1 -0.3634 0.5247 -0.8836 30 1 -0.3634 -1.0275 -0.0127 31 1 -0.3633 0.5030 0.8961 32 1 1.7053 1.9498 0.8990 33 1 3.1400 1.4313 -0.0182 34 1 1.8496 3.0430 -1.2198 35 1 2.9641 -0.2793 1.6202 36 1 1.2919 -0.7860 2.0212 37 1 3.5939 -3.7005 1.1602 38 1 3.9134 -1.5618 -0.7091 39 1 2.7182 -2.7067 -1.3891 40 1 2.9221 -1.8401 -3.2660 41 1 -0.0506 -0.2494 -4.3038 42 1 -0.6638 0.2343 -6.6378 43 1 0.1260 0.7726 -8.8670 44 1 1.7546 0.2901 -9.3989 45 1 -0.3227 -0.1148 -12.4128 46 1 3.2390 -0.9224 -7.9125 47 1 3.8650 -1.3995 -5.5806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932560044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:51 Heat of formation + Delta-G solvation = -115.132892 kcal Electronic energy + Delta-G solvation = -29108.142166 eV Core-core repulsion = 25062.121806 eV Total energy + Delta-G solvation = -4046.020360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.94888 -40.48258 -38.99235 -37.72764 -36.35470 -36.07246 -34.97010 -33.29988 -31.80451 -31.74347 -30.91008 -28.32245 -27.65901 -26.31836 -25.22566 -23.83817 -23.32447 -22.41083 -21.45788 -20.30517 -18.88605 -18.55105 -18.48913 -18.16177 -17.97703 -17.02507 -16.70919 -16.52573 -16.00196 -15.88567 -15.44714 -15.17492 -14.90716 -14.78441 -14.53123 -14.42683 -14.33427 -14.25802 -14.08822 -13.58870 -13.44326 -13.26585 -13.11337 -12.94462 -12.91029 -12.60445 -12.43160 -12.18406 -12.11897 -11.99023 -11.75557 -11.60035 -11.48664 -11.15504 -10.94992 -10.80848 -10.68624 -10.59015 -9.73397 -9.63629 -8.76987 -8.16313 -6.31621 0.53313 0.60561 1.40254 1.41895 1.45024 1.53323 2.22098 2.41694 2.77513 3.05171 3.10730 3.12189 3.45096 3.54985 3.67677 3.91208 4.07226 4.11248 4.15551 4.17956 4.36653 4.41169 4.49308 4.52772 4.59287 4.61703 4.67999 4.68813 4.76564 4.84334 4.86612 4.92063 5.07630 5.14443 5.21363 5.34795 5.37549 5.45195 5.54131 5.57087 5.66272 5.77759 6.03973 6.11233 6.15686 6.29707 6.81091 6.85386 6.96512 6.98018 7.36679 7.65449 8.91262 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021413 B = 0.002380 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.321716 B =11760.274529 C =12268.019663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.180 3.820 3 C 0.065 3.935 4 O -0.557 6.557 5 C -0.109 4.109 6 C 0.105 3.895 7 H 0.087 0.913 8 O -0.565 6.565 9 C 0.060 3.940 10 N -0.622 5.622 11 C 0.708 3.292 12 O -0.561 6.561 13 N -0.674 5.674 14 C 0.146 3.854 15 C -0.122 4.122 16 C -0.118 4.118 17 C -0.078 4.078 18 C 0.058 3.942 19 C -0.526 4.526 20 H 0.056 0.944 21 C 0.002 3.998 22 N -0.932 5.932 23 Si 0.967 3.033 24 H -0.274 1.274 25 H -0.279 1.279 26 H -0.263 1.263 27 C -0.110 4.110 28 C -0.134 4.134 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.374 0.626 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.402 0.598 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.415 0.585 41 H 0.120 0.880 42 H 0.107 0.893 43 H -0.003 1.003 44 H 0.006 0.994 45 H 0.265 0.735 46 H 0.126 0.874 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.945 -5.430 31.567 33.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.095 3.905 3 C -0.014 4.014 4 O -0.361 6.361 5 C -0.146 4.146 6 C 0.044 3.956 7 H 0.104 0.896 8 O -0.373 6.373 9 C -0.063 4.063 10 N -0.361 5.361 11 C 0.410 3.590 12 O -0.435 6.435 13 N -0.324 5.324 14 C 0.051 3.949 15 C -0.142 4.142 16 C -0.137 4.137 17 C -0.079 4.079 18 C 0.021 3.979 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.196 4.196 22 N -0.572 5.572 23 Si 0.791 3.209 24 H -0.199 1.199 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.129 4.129 28 C -0.154 4.154 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.221 0.779 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.253 0.747 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.253 0.747 41 H 0.138 0.862 42 H 0.126 0.874 43 H 0.016 0.984 44 H 0.025 0.975 45 H 0.074 0.926 46 H 0.144 0.856 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.083 -4.671 31.446 32.803 hybrid contribution -0.006 -0.466 -1.215 1.301 sum 8.077 -5.137 30.232 31.711 Atomic orbital electron populations 1.22061 0.94039 1.01960 1.02834 1.21051 0.94676 0.90934 0.83823 1.22651 0.96993 0.92461 0.89309 1.87044 1.75848 1.28692 1.44551 1.22654 1.03368 0.93555 0.95073 1.22731 0.90944 0.93902 0.87973 0.89557 1.86489 1.58177 1.35706 1.56910 1.23235 0.95918 0.89395 0.97748 1.47470 1.53812 1.32138 1.02717 1.15599 0.81064 0.82246 0.80121 1.91017 1.41935 1.28782 1.81761 1.42394 1.49897 1.37316 1.02819 1.17318 0.92767 1.01588 0.83178 1.20943 0.95770 1.01880 0.95626 1.20882 0.99185 1.01313 0.92271 1.20355 0.94362 0.97179 0.95963 1.18072 0.95319 0.95942 0.88534 1.21395 1.41097 0.97020 0.96909 0.92615 1.25963 0.96150 0.99686 0.97793 1.70092 1.48478 1.28733 1.09889 0.85416 0.78698 0.79281 0.77474 1.19937 1.20403 1.18725 1.20934 0.95830 0.99589 0.96536 1.20957 0.99230 1.04094 0.91118 0.93569 0.92371 0.90030 0.91131 0.93871 0.77892 0.88865 0.87256 0.74731 0.90061 0.89081 0.74710 0.86236 0.87449 0.98425 0.97548 0.92602 0.85597 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.22 71.98 0.59 -2.26 16 2 C 0.18 2.97 0.79 3.95 0.00 2.97 16 3 C 0.06 1.12 5.98 71.98 0.43 1.55 16 4 O -0.56 -13.96 9.42 -125.63 -1.18 -15.14 16 5 C -0.11 -1.05 5.75 31.78 0.18 -0.87 16 6 C 0.10 0.86 4.43 31.98 0.14 1.00 16 7 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 8 O -0.56 -4.10 13.47 -148.98 -2.01 -6.11 16 9 C 0.06 0.64 6.27 86.85 0.54 1.19 16 10 N -0.62 -11.92 2.82 -782.95 -2.21 -14.13 16 11 C 0.71 19.76 7.70 179.05 1.38 21.14 16 12 O -0.56 -20.45 9.81 19.35 0.19 -20.26 16 13 N -0.67 -17.18 5.29 -317.17 -1.68 -18.86 16 14 C 0.15 4.87 6.28 38.15 0.24 5.11 16 15 C -0.12 -4.79 8.66 22.39 0.19 -4.60 16 16 C -0.12 -5.24 9.69 22.25 0.22 -5.02 16 17 C -0.08 -3.66 5.07 -19.84 -0.10 -3.76 16 18 C 0.06 3.27 5.10 29.10 0.15 3.42 16 19 C -0.53 -30.94 9.09 25.60 0.23 -30.70 16 20 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 21 C 0.00 0.11 5.46 84.65 0.46 0.57 16 22 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 23 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 27 C -0.11 -4.37 9.69 22.25 0.22 -4.16 16 28 C -0.13 -4.27 9.96 22.39 0.22 -4.04 16 29 H 0.05 1.29 6.32 -2.39 -0.02 1.28 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.04 0.70 8.14 -2.38 -0.02 0.69 16 34 H 0.37 6.82 9.12 -74.06 -0.68 6.14 16 35 H 0.09 0.86 7.85 -2.39 -0.02 0.84 16 36 H 0.11 0.74 7.83 -2.39 -0.02 0.72 16 37 H 0.40 -0.39 9.12 -74.06 -0.68 -1.07 16 38 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.09 0.70 7.39 -2.39 -0.02 0.68 16 40 H 0.42 7.28 7.36 -92.71 -0.68 6.60 16 41 H 0.12 4.81 6.42 -2.91 -0.02 4.79 16 42 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 43 H 0.00 -0.16 8.08 -2.39 -0.02 -0.18 16 44 H 0.01 0.37 8.08 -2.39 -0.02 0.35 16 45 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 46 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 47 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -81.10 379.75 -0.49 -81.59 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -1.02 Total: 21.49 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 5.10 Total: -18.47 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -3.60 Total: -90.24 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -3.00 Total: -41.51 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -81.10 -0.49 -81.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932560044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.540 kcal (2) G-P(sol) polarization free energy of solvation -81.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds