Wall clock time and date at job start Tue Mar 31 2020 17:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34179 * 125.43875 * 2 1 4 4 C 1.47016 * 105.95309 * 180.02562 * 3 2 1 5 5 C 1.47382 * 127.19129 * 179.97438 * 4 3 2 6 6 O 1.21606 * 120.00052 * 180.02562 * 5 4 3 7 7 N 1.34774 * 119.99642 * 0.02562 * 5 4 3 8 8 C 1.47081 * 125.63320 * 359.97438 * 7 5 4 9 9 C 1.54463 * 107.29498 * 179.05372 * 8 7 5 10 10 C 1.54370 * 102.86918 * 338.49012 * 9 8 7 11 11 C 1.47575 * 125.62698 * 180.02562 * 7 5 4 12 12 C 1.51927 * 110.20657 * 152.43225 * 10 9 8 13 13 N 1.47339 * 108.63764 * 73.56191 * 12 10 9 14 14 C 1.36930 * 121.08037 * 229.11584 * 13 12 10 15 15 H 1.08003 * 120.00056 * 28.12796 * 14 13 12 16 16 C 1.38812 * 120.00069 * 208.13267 * 14 13 12 17 17 N 1.31619 * 120.00194 * 198.88990 * 16 14 13 18 18 Si 1.86801 * 119.99779 * 18.88631 * 16 14 13 19 19 H 1.48493 * 109.47290 * 273.15386 * 18 16 14 20 20 H 1.48503 * 109.47188 * 33.15957 * 18 16 14 21 21 H 1.48506 * 109.46803 * 153.15874 * 18 16 14 22 22 C 1.47164 * 117.84028 * 48.84542 * 13 12 10 23 23 C 1.53275 * 108.57968 * 309.06713 * 22 13 12 24 24 O 1.41875 * 110.71657 * 276.29839 * 10 9 8 25 25 C 1.36419 * 105.61951 * 0.21816 * 4 3 2 26 26 C 1.50693 * 125.80536 * 179.75596 * 25 4 3 27 27 O 1.33653 * 108.39060 * 359.63760 * 25 4 3 28 28 H 1.09002 * 109.47462 * 90.00323 * 1 2 3 29 29 H 1.09004 * 109.47350 * 210.00428 * 1 2 3 30 30 H 1.09004 * 109.47458 * 330.00420 * 1 2 3 31 31 H 1.08003 * 127.01736 * 359.97086 * 3 2 1 32 32 H 1.08997 * 109.88060 * 59.62080 * 8 7 5 33 33 H 1.09004 * 109.87219 * 298.46903 * 8 7 5 34 34 H 1.09004 * 110.72837 * 220.15190 * 9 8 7 35 35 H 1.08994 * 110.73580 * 96.84322 * 9 8 7 36 36 H 1.09010 * 110.37399 * 84.44528 * 11 7 5 37 37 H 1.09005 * 110.38021 * 322.10622 * 11 7 5 38 38 H 1.09004 * 109.61825 * 313.73060 * 12 10 9 39 39 H 1.09000 * 109.50275 * 193.32945 * 12 10 9 40 40 H 0.97000 * 120.00007 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.61784 * 68.79193 * 22 13 12 42 42 H 1.08996 * 109.62097 * 189.33385 * 22 13 12 43 43 H 1.08998 * 109.51503 * 172.90062 * 23 22 13 44 44 H 1.09006 * 109.50904 * 293.04211 * 23 22 13 45 45 H 1.08999 * 109.47274 * 89.99847 * 26 25 4 46 46 H 1.08992 * 109.47446 * 210.00260 * 26 25 4 47 47 H 1.09002 * 109.47314 * 330.00313 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4125 -0.0014 6 8 5.9891 0.8665 -0.0023 7 7 4.8243 2.7579 -0.0011 8 6 3.5811 3.5440 -0.0005 9 6 3.9811 5.0357 0.0241 10 6 5.4177 4.9973 0.5877 11 6 5.9719 3.6857 -0.0023 12 6 6.2120 6.1895 0.0818 13 7 5.7455 7.3981 0.7835 14 6 5.4218 8.5356 0.0934 15 1 5.0650 8.4671 -0.9237 16 6 5.5523 9.7769 0.7009 17 7 4.9144 10.8192 0.2122 18 14 6.6334 9.9679 2.2123 19 1 5.8418 9.6574 3.4296 20 1 7.7844 9.0342 2.1188 21 1 7.1336 11.3640 2.2898 22 6 5.6328 7.3411 2.2497 23 6 4.8202 6.0982 2.6292 24 8 5.3995 4.9476 2.0054 25 6 3.5790 -0.7583 -0.0060 26 6 4.7389 -1.7203 -0.0138 27 8 2.2852 -1.0935 -0.0004 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.9594 2.1230 -0.0004 32 1 2.9911 3.3038 0.8839 33 1 3.0065 3.3292 -0.9015 34 1 3.3228 5.6009 0.6840 35 1 3.9723 5.4543 -0.9822 36 1 6.3280 3.8476 -1.0198 37 1 6.7748 3.2972 0.6243 38 1 6.0560 6.3046 -0.9909 39 1 7.2716 6.0333 0.2844 40 1 5.0059 11.6866 0.6365 41 1 6.6275 7.2768 2.6910 42 1 5.1256 8.2349 2.6129 43 1 4.8335 5.9709 3.7116 44 1 3.7917 6.2177 2.2886 45 1 5.0220 -1.9564 1.0119 46 1 4.4488 -2.6350 -0.5305 47 1 5.5850 -1.2650 -0.5286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972254184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:32 Heat of formation + Delta-G solvation = -20.507517 kcal Electronic energy + Delta-G solvation = -29935.227151 eV Core-core repulsion = 25893.310055 eV Total energy + Delta-G solvation = -4041.917096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -42.79504 -40.36476 -38.75743 -36.37110 -34.66642 -33.49366 -33.08108 -31.92256 -31.40005 -29.85683 -29.70846 -27.87364 -26.36807 -25.26397 -23.72458 -23.29945 -22.22662 -21.87833 -20.83969 -19.37635 -18.38792 -17.34992 -17.01265 -16.72475 -16.32509 -16.07745 -15.70431 -15.33119 -15.21266 -14.60580 -14.13732 -14.08394 -13.86563 -13.81699 -13.62372 -13.59344 -13.26054 -13.18591 -12.89185 -12.75669 -12.66388 -12.54706 -12.39580 -12.25882 -11.84445 -11.76398 -11.53540 -11.13567 -11.07975 -10.76383 -10.42798 -10.33200 -9.94642 -9.90752 -9.74835 -9.58448 -9.40491 -8.74629 -8.61390 -8.43156 -7.06141 -6.04535 -3.43907 1.21885 1.83653 2.49706 3.00314 3.23601 3.32599 3.42730 3.46117 3.93321 4.23261 4.43439 4.48093 4.60475 4.67326 4.71353 4.93837 5.01995 5.07053 5.10910 5.12151 5.23184 5.26641 5.29488 5.31627 5.39255 5.48293 5.53528 5.60269 5.66232 5.73644 5.76381 5.81781 5.93168 5.97930 6.04256 6.07561 6.12145 6.19050 6.26839 6.36130 6.43210 6.44179 6.64405 6.87755 7.54197 7.64967 7.79971 8.18889 8.21322 8.78362 9.59488 9.96369 11.11064 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022889 B = 0.002894 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.981496 B = 9671.484352 C =10218.100071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.018 4.018 3 C -0.192 4.192 4 C -0.234 4.234 5 C 0.605 3.395 6 O -0.547 6.547 7 N -0.603 5.603 8 C 0.102 3.898 9 C -0.148 4.148 10 C 0.093 3.907 11 C 0.125 3.875 12 C 0.133 3.867 13 N -0.605 5.605 14 C -0.261 4.261 15 H 0.088 0.912 16 C 0.026 3.974 17 N -0.907 5.907 18 Si 0.885 3.115 19 H -0.286 1.286 20 H -0.272 1.272 21 H -0.302 1.302 22 C 0.088 3.912 23 C 0.046 3.954 24 O -0.369 6.369 25 C 0.073 3.927 26 C -0.080 4.080 27 O -0.176 6.176 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.166 0.834 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.264 0.736 41 H 0.033 0.967 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.663 -21.478 -0.027 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.211 4.211 4 C -0.239 4.239 5 C 0.396 3.604 6 O -0.427 6.427 7 N -0.336 5.336 8 C -0.021 4.021 9 C -0.186 4.186 10 C 0.051 3.949 11 C 0.003 3.997 12 C 0.007 3.993 13 N -0.330 5.330 14 C -0.389 4.389 15 H 0.105 0.895 16 C -0.173 4.173 17 N -0.550 5.550 18 Si 0.716 3.284 19 H -0.214 1.214 20 H -0.197 1.197 21 H -0.230 1.230 22 C -0.037 4.037 23 C -0.032 4.032 24 O -0.288 6.288 25 C 0.020 3.980 26 C -0.136 4.136 27 O -0.073 6.073 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.183 0.817 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.170 -22.066 0.054 23.202 hybrid contribution 0.369 0.880 0.849 1.278 sum -6.800 -21.186 0.903 22.269 Atomic orbital electron populations 1.20331 0.84697 1.04219 1.03670 1.22281 0.93988 0.83702 1.06652 1.23129 0.90811 1.00052 1.07126 1.21052 0.93803 0.93114 1.15885 1.16768 0.87370 0.80160 0.76109 1.90739 1.28941 1.71007 1.52061 1.48195 1.08458 1.04438 1.72477 1.22391 0.86954 0.91645 1.01086 1.23117 0.98106 0.93948 1.03452 1.22255 0.95052 0.95026 0.82592 1.22094 0.89401 0.87253 1.01001 1.21235 0.95465 0.85513 0.97132 1.44349 1.77174 1.10651 1.00805 1.18856 1.38207 0.82274 0.99517 0.89467 1.25284 0.98616 0.95216 0.98222 1.69803 1.42232 1.00630 1.42289 0.86980 0.82345 0.76093 0.83011 1.21388 1.19713 1.23038 1.22066 0.98055 0.97590 0.86032 1.23149 0.96932 0.86469 0.96645 1.87693 1.82352 1.41218 1.17518 1.22735 0.82876 0.93969 0.98393 1.20595 0.92139 0.96531 1.04368 1.83679 1.16160 1.35734 1.71756 0.89977 0.90517 0.89098 0.81714 0.91200 0.91237 0.88971 0.89325 0.89651 0.89411 0.90605 0.94826 0.92602 0.94879 0.89808 0.89517 0.92685 0.89414 0.90543 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.40 36.00 0.37 -0.06 16 2 C -0.02 -0.18 7.28 -35.74 -0.26 -0.44 16 3 C -0.19 -2.15 9.30 -37.46 -0.35 -2.50 16 4 C -0.23 -3.16 6.24 -103.28 -0.64 -3.81 16 5 C 0.61 9.44 7.84 -12.54 -0.10 9.34 16 6 O -0.55 -9.64 15.12 5.27 0.08 -9.56 16 7 N -0.60 -8.88 3.33 -172.04 -0.57 -9.45 16 8 C 0.10 1.29 5.01 -2.96 -0.01 1.27 16 9 C -0.15 -2.15 5.86 -25.25 -0.15 -2.30 16 10 C 0.09 1.52 0.84 -89.86 -0.08 1.45 16 11 C 0.13 1.89 6.09 -2.87 -0.02 1.88 16 12 C 0.13 2.51 5.36 -4.13 -0.02 2.49 16 13 N -0.60 -13.68 2.74 -172.50 -0.47 -14.16 16 14 C -0.26 -6.91 10.10 -15.06 -0.15 -7.06 16 15 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 16 C 0.03 0.72 5.26 -17.43 -0.09 0.63 16 17 N -0.91 -26.86 13.97 55.49 0.78 -26.08 16 18 Si 0.89 21.83 24.31 -169.99 -4.13 17.70 16 19 H -0.29 -6.70 6.39 56.52 0.36 -6.34 16 20 H -0.27 -6.73 6.86 56.52 0.39 -6.34 16 21 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 22 C 0.09 1.86 4.37 -3.54 -0.02 1.84 16 23 C 0.05 0.80 6.78 37.30 0.25 1.05 16 24 O -0.37 -6.61 10.29 -35.22 -0.36 -6.98 16 25 C 0.07 0.89 7.37 -34.97 -0.26 0.63 16 26 C -0.08 -0.77 9.89 36.00 0.36 -0.42 16 27 O -0.18 -2.02 10.52 7.66 0.08 -1.94 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.17 1.58 4.87 -52.48 -0.26 1.32 16 32 H 0.07 0.85 6.86 -51.93 -0.36 0.49 16 33 H 0.07 0.76 7.01 -51.93 -0.36 0.39 16 34 H 0.09 1.41 6.07 -51.93 -0.32 1.10 16 35 H 0.09 1.27 7.80 -51.93 -0.41 0.87 16 36 H 0.09 1.17 7.99 -51.92 -0.42 0.75 16 37 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 38 H 0.08 1.37 7.70 -51.93 -0.40 0.97 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.03 0.72 7.06 -51.92 -0.37 0.35 16 42 H 0.08 1.89 4.64 -51.93 -0.24 1.65 16 43 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.05 0.93 6.22 -51.93 -0.32 0.61 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.11 1.20 6.49 -51.93 -0.34 0.87 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -32.80 362.78 -7.07 -39.87 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.77 Total: 1.14 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.16 Total: 3.99 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.27 Total: -49.69 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.20 Total: -18.47 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.13 Total: 17.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.80 -7.07 -39.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972254184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.358 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds