Wall clock time and date at job start Tue Mar 31 2020 17:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34179 * 125.43875 * 2 1 4 4 C 1.47016 * 105.95309 * 180.02562 * 3 2 1 5 5 C 1.47382 * 127.19129 * 179.97438 * 4 3 2 6 6 O 1.21606 * 120.00052 * 180.02562 * 5 4 3 7 7 N 1.34774 * 119.99642 * 0.02562 * 5 4 3 8 8 C 1.47081 * 125.63320 * 359.97438 * 7 5 4 9 9 C 1.54463 * 107.29498 * 179.05372 * 8 7 5 10 10 C 1.54370 * 102.86918 * 338.49012 * 9 8 7 11 11 C 1.47575 * 125.62698 * 180.02562 * 7 5 4 12 12 C 1.51927 * 110.20657 * 152.43225 * 10 9 8 13 13 N 1.47339 * 108.63764 * 73.56191 * 12 10 9 14 14 C 1.36930 * 121.08037 * 229.11584 * 13 12 10 15 15 H 1.08003 * 120.00056 * 28.12796 * 14 13 12 16 16 C 1.38812 * 120.00069 * 208.13267 * 14 13 12 17 17 N 1.31619 * 120.00194 * 198.88990 * 16 14 13 18 18 Si 1.86801 * 119.99779 * 18.88631 * 16 14 13 19 19 H 1.48493 * 109.47290 * 273.15386 * 18 16 14 20 20 H 1.48503 * 109.47188 * 33.15957 * 18 16 14 21 21 H 1.48506 * 109.46803 * 153.15874 * 18 16 14 22 22 C 1.47164 * 117.84028 * 48.84542 * 13 12 10 23 23 C 1.53275 * 108.57968 * 309.06713 * 22 13 12 24 24 O 1.41875 * 110.71657 * 276.29839 * 10 9 8 25 25 C 1.36419 * 105.61951 * 0.21816 * 4 3 2 26 26 C 1.50693 * 125.80536 * 179.75596 * 25 4 3 27 27 O 1.33653 * 108.39060 * 359.63760 * 25 4 3 28 28 H 1.09002 * 109.47462 * 90.00323 * 1 2 3 29 29 H 1.09004 * 109.47350 * 210.00428 * 1 2 3 30 30 H 1.09004 * 109.47458 * 330.00420 * 1 2 3 31 31 H 1.08003 * 127.01736 * 359.97086 * 3 2 1 32 32 H 1.08997 * 109.88060 * 59.62080 * 8 7 5 33 33 H 1.09004 * 109.87219 * 298.46903 * 8 7 5 34 34 H 1.09004 * 110.72837 * 220.15190 * 9 8 7 35 35 H 1.08994 * 110.73580 * 96.84322 * 9 8 7 36 36 H 1.09010 * 110.37399 * 84.44528 * 11 7 5 37 37 H 1.09005 * 110.38021 * 322.10622 * 11 7 5 38 38 H 1.09004 * 109.61825 * 313.73060 * 12 10 9 39 39 H 1.09000 * 109.50275 * 193.32945 * 12 10 9 40 40 H 0.97000 * 120.00007 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.61784 * 68.79193 * 22 13 12 42 42 H 1.08996 * 109.62097 * 189.33385 * 22 13 12 43 43 H 1.08998 * 109.51503 * 172.90062 * 23 22 13 44 44 H 1.09006 * 109.50904 * 293.04211 * 23 22 13 45 45 H 1.08999 * 109.47274 * 89.99847 * 26 25 4 46 46 H 1.08992 * 109.47446 * 210.00260 * 26 25 4 47 47 H 1.09002 * 109.47314 * 330.00313 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4125 -0.0014 6 8 5.9891 0.8665 -0.0023 7 7 4.8243 2.7579 -0.0011 8 6 3.5811 3.5440 -0.0005 9 6 3.9811 5.0357 0.0241 10 6 5.4177 4.9973 0.5877 11 6 5.9719 3.6857 -0.0023 12 6 6.2120 6.1895 0.0818 13 7 5.7455 7.3981 0.7835 14 6 5.4218 8.5356 0.0934 15 1 5.0650 8.4671 -0.9237 16 6 5.5523 9.7769 0.7009 17 7 4.9144 10.8192 0.2122 18 14 6.6334 9.9679 2.2123 19 1 5.8418 9.6574 3.4296 20 1 7.7844 9.0342 2.1188 21 1 7.1336 11.3640 2.2898 22 6 5.6328 7.3411 2.2497 23 6 4.8202 6.0982 2.6292 24 8 5.3995 4.9476 2.0054 25 6 3.5790 -0.7583 -0.0060 26 6 4.7389 -1.7203 -0.0138 27 8 2.2852 -1.0935 -0.0004 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.9594 2.1230 -0.0004 32 1 2.9911 3.3038 0.8839 33 1 3.0065 3.3292 -0.9015 34 1 3.3228 5.6009 0.6840 35 1 3.9723 5.4543 -0.9822 36 1 6.3280 3.8476 -1.0198 37 1 6.7748 3.2972 0.6243 38 1 6.0560 6.3046 -0.9909 39 1 7.2716 6.0333 0.2844 40 1 5.0059 11.6866 0.6365 41 1 6.6275 7.2768 2.6910 42 1 5.1256 8.2349 2.6129 43 1 4.8335 5.9709 3.7116 44 1 3.7917 6.2177 2.2886 45 1 5.0220 -1.9564 1.0119 46 1 4.4488 -2.6350 -0.5305 47 1 5.5850 -1.2650 -0.5286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972254184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:31 Heat of formation + Delta-G solvation = -42.366297 kcal Electronic energy + Delta-G solvation = -29936.175019 eV Core-core repulsion = 25893.310055 eV Total energy + Delta-G solvation = -4042.864964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.64139 -41.64978 -40.04954 -37.71212 -36.35430 -34.38536 -33.86394 -33.68971 -32.90785 -31.07549 -30.43176 -29.38371 -27.82908 -26.24122 -25.05464 -24.60319 -23.55824 -23.09118 -21.93626 -20.76500 -19.44562 -18.93572 -18.38679 -17.70283 -17.50799 -17.42465 -16.98293 -16.53786 -16.41480 -15.97431 -15.88690 -15.50938 -15.45498 -14.68510 -14.61364 -14.39339 -14.34862 -14.14895 -14.07998 -13.87159 -13.77535 -13.65524 -13.55763 -13.46308 -13.28033 -13.11639 -12.61837 -12.50620 -12.42973 -12.24587 -12.12915 -11.98461 -11.58265 -11.31545 -11.12860 -11.01411 -10.81172 -10.48016 -9.81079 -9.32372 -8.94133 -8.18352 -5.53433 0.27265 1.01916 1.26922 1.41321 1.48827 1.66804 1.93171 2.23949 2.38847 2.59672 2.95590 3.18173 3.41702 3.49915 3.57014 3.78520 3.83396 3.90513 4.08958 4.15001 4.24017 4.25069 4.37506 4.42203 4.47422 4.52131 4.54614 4.59430 4.59879 4.64929 4.68342 4.70295 4.74967 4.83608 4.86526 4.88921 4.93398 5.00470 5.03894 5.16791 5.21772 5.22604 5.43476 5.80089 6.04353 6.10153 6.26319 6.41723 6.81394 7.03545 7.54063 7.96171 9.00877 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022889 B = 0.002894 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.981496 B = 9671.484352 C =10218.100071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.013 4.013 3 C -0.205 4.205 4 C -0.262 4.262 5 C 0.600 3.400 6 O -0.578 6.578 7 N -0.605 5.605 8 C 0.109 3.891 9 C -0.143 4.143 10 C 0.096 3.904 11 C 0.129 3.871 12 C 0.130 3.870 13 N -0.616 5.616 14 C -0.242 4.242 15 H 0.062 0.938 16 C -0.028 4.028 17 N -0.953 5.953 18 Si 0.941 3.059 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.312 1.312 22 C 0.082 3.918 23 C 0.054 3.946 24 O -0.376 6.376 25 C 0.069 3.931 26 C -0.079 4.079 27 O -0.180 6.180 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.180 0.820 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.031 0.969 42 H 0.069 0.931 43 H 0.116 0.884 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.115 -23.543 0.798 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.061 4.061 3 C -0.224 4.224 4 C -0.267 4.267 5 C 0.392 3.608 6 O -0.460 6.460 7 N -0.337 5.337 8 C -0.012 4.012 9 C -0.181 4.181 10 C 0.054 3.946 11 C 0.006 3.994 12 C 0.005 3.995 13 N -0.342 5.342 14 C -0.371 4.371 15 H 0.080 0.920 16 C -0.223 4.223 17 N -0.599 5.599 18 Si 0.770 3.230 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.241 1.241 22 C -0.043 4.043 23 C -0.023 4.023 24 O -0.295 6.295 25 C 0.016 3.984 26 C -0.135 4.135 27 O -0.077 6.077 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.197 0.803 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.087 0.913 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.120 0.880 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.636 -24.171 0.897 25.683 hybrid contribution 0.802 1.439 0.519 1.727 sum -7.833 -22.732 1.416 24.085 Atomic orbital electron populations 1.20550 0.81716 1.05568 1.05041 1.23040 0.95532 0.82929 1.04643 1.23284 0.89774 1.01173 1.08153 1.21082 0.93996 0.93728 1.17852 1.17115 0.87778 0.80347 0.75559 1.90714 1.30186 1.71551 1.53554 1.48239 1.08882 1.04380 1.72237 1.22444 0.86316 0.89763 1.02725 1.23050 0.96570 0.95366 1.03101 1.22161 0.95986 0.94337 0.82123 1.22011 0.89359 0.86681 1.01348 1.21368 0.95806 0.85049 0.97292 1.44433 1.77529 1.10540 1.01695 1.18801 1.36110 0.83604 0.98633 0.91991 1.25825 1.00077 0.95127 1.01290 1.69917 1.44371 1.01132 1.44448 0.86069 0.80697 0.75137 0.81088 1.19153 1.19893 1.24119 1.22128 0.98389 0.98945 0.84835 1.23117 0.96358 0.84520 0.98321 1.87703 1.82487 1.41123 1.18164 1.23100 0.83652 0.94077 0.97554 1.20627 0.90916 0.96967 1.04969 1.83710 1.15948 1.36405 1.71607 0.88466 0.89456 0.87458 0.80320 0.90172 0.88992 0.89485 0.89314 0.88362 0.90709 0.90182 0.94909 0.92857 0.95148 0.91274 0.86617 0.91950 0.88627 0.88050 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.40 71.24 0.74 0.13 16 2 C -0.01 -0.23 7.28 24.76 0.18 -0.05 16 3 C -0.21 -4.12 9.30 23.65 0.22 -3.90 16 4 C -0.26 -6.75 6.24 -18.99 -0.12 -6.87 16 5 C 0.60 18.27 7.84 86.65 0.68 18.95 16 6 O -0.58 -20.39 15.12 -4.05 -0.06 -20.45 16 7 N -0.61 -16.99 3.33 -816.45 -2.72 -19.71 16 8 C 0.11 2.51 5.01 86.77 0.43 2.94 16 9 C -0.14 -3.89 5.86 31.56 0.18 -3.71 16 10 C 0.10 3.01 0.84 -10.30 -0.01 3.00 16 11 C 0.13 3.77 6.09 86.55 0.53 4.30 16 12 C 0.13 4.82 5.36 85.87 0.46 5.28 16 13 N -0.62 -27.51 2.74 -699.67 -1.92 -29.43 16 14 C -0.24 -12.94 10.10 84.03 0.85 -12.10 16 15 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 16 C -0.03 -1.56 5.26 84.86 0.45 -1.12 16 17 N -0.95 -57.61 13.97 21.65 0.30 -57.31 16 18 Si 0.94 45.27 24.31 68.60 1.67 46.94 16 19 H -0.27 -11.74 6.39 99.48 0.64 -11.10 16 20 H -0.27 -13.08 6.86 99.48 0.68 -12.40 16 21 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 22 C 0.08 3.33 4.37 86.34 0.38 3.71 16 23 C 0.05 1.76 6.78 72.07 0.49 2.25 16 24 O -0.38 -12.71 10.29 -148.95 -1.53 -14.25 16 25 C 0.07 1.59 7.37 25.26 0.19 1.78 16 26 C -0.08 -1.44 9.89 71.23 0.70 -0.73 16 27 O -0.18 -3.74 10.52 4.48 0.05 -3.69 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.18 2.89 4.87 -2.91 -0.01 2.88 16 32 H 0.08 1.71 6.86 -2.39 -0.02 1.70 16 33 H 0.09 1.73 7.01 -2.39 -0.02 1.72 16 34 H 0.09 2.49 6.07 -2.38 -0.01 2.48 16 35 H 0.09 2.42 7.80 -2.39 -0.02 2.40 16 36 H 0.10 2.60 7.99 -2.38 -0.02 2.58 16 37 H 0.07 2.39 8.06 -2.38 -0.02 2.37 16 38 H 0.08 2.85 7.70 -2.38 -0.02 2.83 16 39 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.03 1.26 7.06 -2.38 -0.02 1.25 16 42 H 0.07 3.01 4.64 -2.39 -0.01 3.00 16 43 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 44 H 0.06 1.95 6.22 -2.38 -0.01 1.94 16 45 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 46 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.09 2.04 6.49 -2.39 -0.02 2.03 16 Total: -1.00 -71.39 362.78 3.04 -68.35 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.90 Total: 15.70 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.35 Total: 13.86 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -4.34 Total: -106.44 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.55 Total: -38.40 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.94 kcal Total: -71.39 3.04 -68.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972254184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.981 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds