Wall clock time and date at job start Tue Mar 31 2020 20:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35917 * 116.99713 * 2 1 4 4 C 1.38729 * 119.95186 * 359.97438 * 3 2 1 5 5 C 1.38729 * 120.18795 * 179.97438 * 4 3 2 6 6 O 1.35904 * 119.95637 * 180.02562 * 5 4 3 7 7 C 1.42896 * 116.99952 * 359.97438 * 6 5 4 8 8 C 1.38512 * 120.09141 * 0.02562 * 5 4 3 9 9 C 1.39520 * 119.90537 * 0.02562 * 8 5 4 10 10 C 1.47876 * 120.09044 * 180.02562 * 9 8 5 11 11 O 1.21543 * 120.00068 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99822 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 C 1.53001 * 110.64239 * 298.31923 * 13 12 10 15 15 C 1.55151 * 110.72518 * 174.97659 * 13 12 10 16 16 C 1.54909 * 101.58568 * 277.14427 * 15 13 12 17 17 N 1.47429 * 104.82732 * 322.98627 * 16 15 13 18 18 C 1.36933 * 125.64931 * 204.09143 * 17 16 15 19 19 H 1.08000 * 120.00283 * 180.02562 * 18 17 16 20 20 C 1.38820 * 119.99597 * 0.04395 * 18 17 16 21 21 N 1.31615 * 120.00096 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99658 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47379 * 90.00277 * 22 20 18 24 24 H 1.48507 * 109.46743 * 210.00121 * 22 20 18 25 25 H 1.48496 * 109.47272 * 329.99759 * 22 20 18 26 26 C 1.47023 * 108.70262 * 24.12953 * 17 16 15 27 27 C 1.38514 * 119.95305 * 180.27857 * 3 2 1 28 28 H 1.08997 * 109.47780 * 299.99927 * 1 2 3 29 29 H 1.09004 * 109.47195 * 60.00760 * 1 2 3 30 30 H 1.09006 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.90482 * 359.97438 * 4 3 2 32 32 H 1.08999 * 109.47333 * 299.99757 * 7 6 5 33 33 H 1.09009 * 109.47263 * 59.99651 * 7 6 5 34 34 H 1.09003 * 109.47507 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.04628 * 180.02562 * 8 5 4 36 36 H 0.96999 * 120.00047 * 0.02562 * 12 10 9 37 37 H 1.08997 * 109.47162 * 59.29361 * 14 13 12 38 38 H 1.08998 * 109.47255 * 179.29883 * 14 13 12 39 39 H 1.09003 * 109.46909 * 299.29893 * 14 13 12 40 40 H 1.09007 * 111.00329 * 35.21587 * 15 13 12 41 41 H 1.08996 * 111.00601 * 159.06516 * 15 13 12 42 42 H 1.08989 * 110.36728 * 204.15119 * 16 15 13 43 43 H 1.08998 * 110.36867 * 81.82176 * 16 15 13 44 44 H 0.97006 * 119.99591 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.88365 * 239.51649 * 26 17 16 46 46 H 1.09003 * 109.88142 * 118.35470 * 26 17 16 47 47 H 1.08007 * 120.04729 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2111 0.0000 4 6 1.2893 2.3739 -0.0005 5 6 1.9140 3.6126 0.0000 6 8 1.1682 4.7487 0.0000 7 6 -0.2522 4.5923 -0.0011 8 6 3.2968 3.6930 0.0005 9 6 4.0614 2.5261 0.0000 10 6 5.5380 2.6072 0.0011 11 8 6.0870 3.6915 0.0021 12 7 6.2748 1.4787 0.0011 13 6 7.7376 1.5590 0.0017 14 6 8.2394 2.2670 -1.2584 15 6 8.3650 0.1457 0.1287 16 6 8.3104 -0.0826 1.6599 17 7 8.5972 1.2383 2.2486 18 6 9.1068 1.4606 3.5000 19 1 9.2817 2.4706 3.8403 20 6 9.3991 0.3878 4.3310 21 7 9.1859 -0.8430 3.9163 22 14 10.0937 0.6911 6.0384 23 1 8.9787 0.8201 7.0107 24 1 10.9619 -0.4487 6.4292 25 1 10.8928 1.9427 6.0325 26 6 8.2445 2.2773 1.2700 27 6 3.4292 1.2825 -0.0058 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.2109 2.3146 -0.0014 32 1 -0.5565 4.0423 -0.8916 33 1 -0.5578 4.0413 0.8884 34 1 -0.7259 5.5740 -0.0006 35 1 3.7823 4.6577 0.0014 36 1 5.8367 0.6133 0.0000 37 1 7.8207 3.2725 -1.3013 38 1 9.3274 2.3273 -1.2324 39 1 7.9275 1.7057 -2.1391 40 1 7.7656 -0.5967 -0.3986 41 1 9.3940 0.1413 -0.2306 42 1 9.0677 -0.8054 1.9629 43 1 7.3188 -0.4233 1.9575 44 1 9.3898 -1.5927 4.4973 45 1 9.1239 2.8753 1.0311 46 1 7.4584 2.9153 1.6739 47 1 4.0175 0.3767 -0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046796479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:26 Heat of formation + Delta-G solvation = -45.350974 kcal Electronic energy + Delta-G solvation = -29315.919727 eV Core-core repulsion = 25272.925338 eV Total energy + Delta-G solvation = -4042.994389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.91070 -39.79211 -39.09138 -37.51239 -36.27800 -34.02404 -32.12376 -30.71279 -30.53311 -29.62037 -28.62476 -28.29958 -26.85937 -25.63187 -24.13502 -23.27416 -22.57742 -20.75298 -20.28479 -19.11236 -18.88781 -17.27793 -16.96660 -16.46571 -16.27533 -16.23684 -16.00435 -15.78510 -15.35839 -15.00384 -14.64949 -14.62263 -14.08721 -13.67470 -13.44458 -13.08622 -12.93479 -12.72820 -12.60597 -12.46309 -12.18295 -11.97577 -11.91749 -11.68751 -11.65586 -11.52489 -11.41480 -10.90567 -10.82685 -10.76040 -10.37716 -10.30384 -10.04280 -9.93500 -9.62802 -9.32270 -8.96868 -8.60773 -8.57477 -8.23433 -6.75358 -5.59880 -2.99820 0.68856 1.25602 2.83290 2.93195 2.95494 3.44593 3.49165 3.50226 3.51760 3.81452 4.46562 4.53721 4.55108 4.66962 4.77500 4.79805 4.85957 4.88870 5.00890 5.09500 5.13069 5.13746 5.24442 5.39900 5.44382 5.55157 5.61678 5.78632 5.91974 5.96793 6.08175 6.16542 6.20583 6.26850 6.29273 6.40084 6.49949 6.56232 6.75081 6.85393 6.90009 7.18075 7.19889 7.51002 7.68963 7.82202 7.90039 8.40372 8.50468 9.28728 9.89489 10.54509 11.44524 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012762 B = 0.003002 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.564311 B = 9323.819501 C = 9670.541532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.159 3.841 4 C -0.279 4.279 5 C 0.157 3.843 6 O -0.310 6.310 7 C 0.026 3.974 8 C -0.129 4.129 9 C -0.048 4.048 10 C 0.560 3.440 11 O -0.526 6.526 12 N -0.699 5.699 13 C 0.158 3.842 14 C -0.150 4.150 15 C -0.146 4.146 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.216 4.216 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.925 5.925 22 Si 0.914 3.086 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.136 3.864 27 C -0.154 4.154 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.398 0.602 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.011 0.989 44 H 0.251 0.749 45 H 0.031 0.969 46 H 0.035 0.965 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.996 3.006 -12.786 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.223 6.223 3 C 0.113 3.887 4 C -0.298 4.298 5 C 0.111 3.889 6 O -0.223 6.223 7 C -0.069 4.069 8 C -0.148 4.148 9 C -0.051 4.051 10 C 0.346 3.654 11 O -0.404 6.404 12 N -0.350 5.350 13 C 0.073 3.927 14 C -0.208 4.208 15 C -0.185 4.185 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.344 4.344 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.574 5.574 22 Si 0.745 3.255 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.010 3.990 27 C -0.173 4.173 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.154 0.846 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.165 0.835 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.126 0.874 43 H 0.028 0.972 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.354 3.672 -12.590 23.379 hybrid contribution -0.642 -0.407 1.009 1.264 sum -19.996 3.265 -11.581 23.337 Atomic orbital electron populations 1.23080 0.78369 1.04196 1.01206 1.86129 1.21397 1.26374 1.88429 1.18509 0.91710 0.83769 0.94702 1.21364 1.00568 0.91956 1.15944 1.18534 0.90843 0.84629 0.94894 1.86124 1.18919 1.28858 1.88448 1.23080 0.78538 1.04011 1.01235 1.20371 0.89853 0.99633 1.04959 1.19588 0.93538 0.92306 0.99679 1.17939 0.85815 0.84648 0.76960 1.90749 1.72578 1.27772 1.49265 1.45918 1.07014 1.08245 1.73804 1.21396 0.77905 0.97611 0.95805 1.22037 1.01265 1.01652 0.95856 1.23362 1.00205 0.93321 1.01650 1.21938 1.00257 0.89835 0.85204 1.44507 1.74713 1.00704 1.13104 1.19101 1.33513 0.92908 0.88895 0.90544 1.24754 1.02130 0.95249 0.98714 1.69776 1.54773 0.97257 1.35615 0.86073 0.78466 0.76941 0.84066 1.21750 1.21720 1.20704 1.21614 0.97144 0.91949 0.88333 1.20483 0.91572 0.97906 1.07362 0.92631 0.92718 0.87947 0.84591 0.92697 0.92630 0.87986 0.83510 0.76634 0.90981 0.91639 0.93069 0.91867 0.90415 0.87425 0.97153 0.93861 0.95095 0.94670 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.36 10.49 -19.48 -0.20 -3.57 16 3 C 0.16 1.90 6.68 -39.30 -0.26 1.63 16 4 C -0.28 -2.97 8.02 -39.22 -0.31 -3.28 16 5 C 0.16 1.92 6.68 -39.30 -0.26 1.66 16 6 O -0.31 -3.44 10.49 -19.44 -0.20 -3.64 16 7 C 0.03 0.17 9.81 101.05 0.99 1.16 16 8 C -0.13 -1.83 9.53 -39.00 -0.37 -2.20 16 9 C -0.05 -0.71 5.87 -105.00 -0.62 -1.32 16 10 C 0.56 9.70 6.99 -12.32 -0.09 9.61 16 11 O -0.53 -10.52 13.26 5.33 0.07 -10.45 16 12 N -0.70 -11.61 5.09 -46.84 -0.24 -11.85 16 13 C 0.16 2.90 0.81 -129.99 -0.11 2.80 16 14 C -0.15 -2.40 8.45 37.16 0.31 -2.08 16 15 C -0.15 -2.69 6.09 -24.59 -0.15 -2.84 16 16 C 0.15 3.67 5.87 -2.53 -0.01 3.65 16 17 N -0.60 -15.95 3.39 -170.07 -0.58 -16.53 16 18 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 21 N -0.92 -27.13 10.09 55.49 0.56 -26.57 16 22 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.14 3.11 6.13 -3.06 -0.02 3.09 16 27 C -0.15 -2.02 9.48 -39.01 -0.37 -2.39 16 28 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 29 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.14 1.04 4.49 -52.49 -0.24 0.80 16 32 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 33 H 0.06 0.31 7.65 -51.92 -0.40 -0.09 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.15 2.17 7.64 -52.49 -0.40 1.77 16 36 H 0.40 5.76 6.50 -40.82 -0.27 5.50 16 37 H 0.07 1.24 6.38 -51.93 -0.33 0.91 16 38 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.98 8.04 -51.92 -0.42 0.56 16 41 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 42 H 0.11 2.91 5.87 -51.94 -0.31 2.60 16 43 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.03 0.72 7.80 -51.93 -0.41 0.31 16 46 H 0.04 0.88 6.47 -51.93 -0.34 0.54 16 47 H 0.14 1.66 6.40 -52.48 -0.34 1.32 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -34.19 374.76 -7.19 -41.38 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.70 Total: 4.19 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.53 Total: 3.78 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.26 Total: -54.95 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.34 Total: -17.66 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.19 -7.19 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046796479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.971 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds