Wall clock time and date at job start Tue Mar 31 2020 20:21:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.35917 * 116.99713 * 2 1
4 4 C 1.38729 * 119.95186 * 359.97438 * 3 2 1
5 5 C 1.38729 * 120.18795 * 179.97438 * 4 3 2
6 6 O 1.35904 * 119.95637 * 180.02562 * 5 4 3
7 7 C 1.42896 * 116.99952 * 359.97438 * 6 5 4
8 8 C 1.38512 * 120.09141 * 0.02562 * 5 4 3
9 9 C 1.39520 * 119.90537 * 0.02562 * 8 5 4
10 10 C 1.47876 * 120.09044 * 180.02562 * 9 8 5
11 11 O 1.21543 * 120.00068 * 359.97438 * 10 9 8
12 12 N 1.34777 * 119.99822 * 179.97438 * 10 9 8
13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9
14 14 C 1.53001 * 110.64239 * 298.31923 * 13 12 10
15 15 C 1.55151 * 110.72518 * 174.97659 * 13 12 10
16 16 C 1.54909 * 101.58568 * 277.14427 * 15 13 12
17 17 N 1.47429 * 104.82732 * 322.98627 * 16 15 13
18 18 C 1.36933 * 125.64931 * 204.09143 * 17 16 15
19 19 H 1.08000 * 120.00283 * 180.02562 * 18 17 16
20 20 C 1.38820 * 119.99597 * 0.04395 * 18 17 16
21 21 N 1.31615 * 120.00096 * 359.97438 * 20 18 17
22 22 Si 1.86802 * 119.99658 * 180.02562 * 20 18 17
23 23 H 1.48501 * 109.47379 * 90.00277 * 22 20 18
24 24 H 1.48507 * 109.46743 * 210.00121 * 22 20 18
25 25 H 1.48496 * 109.47272 * 329.99759 * 22 20 18
26 26 C 1.47023 * 108.70262 * 24.12953 * 17 16 15
27 27 C 1.38514 * 119.95305 * 180.27857 * 3 2 1
28 28 H 1.08997 * 109.47780 * 299.99927 * 1 2 3
29 29 H 1.09004 * 109.47195 * 60.00760 * 1 2 3
30 30 H 1.09006 * 109.47006 * 180.02562 * 1 2 3
31 31 H 1.08001 * 119.90482 * 359.97438 * 4 3 2
32 32 H 1.08999 * 109.47333 * 299.99757 * 7 6 5
33 33 H 1.09009 * 109.47263 * 59.99651 * 7 6 5
34 34 H 1.09003 * 109.47507 * 179.97438 * 7 6 5
35 35 H 1.08001 * 120.04628 * 180.02562 * 8 5 4
36 36 H 0.96999 * 120.00047 * 0.02562 * 12 10 9
37 37 H 1.08997 * 109.47162 * 59.29361 * 14 13 12
38 38 H 1.08998 * 109.47255 * 179.29883 * 14 13 12
39 39 H 1.09003 * 109.46909 * 299.29893 * 14 13 12
40 40 H 1.09007 * 111.00329 * 35.21587 * 15 13 12
41 41 H 1.08996 * 111.00601 * 159.06516 * 15 13 12
42 42 H 1.08989 * 110.36728 * 204.15119 * 16 15 13
43 43 H 1.08998 * 110.36867 * 81.82176 * 16 15 13
44 44 H 0.97006 * 119.99591 * 180.02562 * 21 20 18
45 45 H 1.08997 * 109.88365 * 239.51649 * 26 17 16
46 46 H 1.09003 * 109.88142 * 118.35470 * 26 17 16
47 47 H 1.08007 * 120.04729 * 359.97438 * 27 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0459 1.2111 0.0000
4 6 1.2893 2.3739 -0.0005
5 6 1.9140 3.6126 0.0000
6 8 1.1682 4.7487 0.0000
7 6 -0.2522 4.5923 -0.0011
8 6 3.2968 3.6930 0.0005
9 6 4.0614 2.5261 0.0000
10 6 5.5380 2.6072 0.0011
11 8 6.0870 3.6915 0.0021
12 7 6.2748 1.4787 0.0011
13 6 7.7376 1.5590 0.0017
14 6 8.2394 2.2670 -1.2584
15 6 8.3650 0.1457 0.1287
16 6 8.3104 -0.0826 1.6599
17 7 8.5972 1.2383 2.2486
18 6 9.1068 1.4606 3.5000
19 1 9.2817 2.4706 3.8403
20 6 9.3991 0.3878 4.3310
21 7 9.1859 -0.8430 3.9163
22 14 10.0937 0.6911 6.0384
23 1 8.9787 0.8201 7.0107
24 1 10.9619 -0.4487 6.4292
25 1 10.8928 1.9427 6.0325
26 6 8.2445 2.2773 1.2700
27 6 3.4292 1.2825 -0.0058
28 1 -0.3634 0.5138 0.8899
29 1 -0.3634 0.5137 -0.8901
30 1 -0.3633 -1.0277 0.0005
31 1 0.2109 2.3146 -0.0014
32 1 -0.5565 4.0423 -0.8916
33 1 -0.5578 4.0413 0.8884
34 1 -0.7259 5.5740 -0.0006
35 1 3.7823 4.6577 0.0014
36 1 5.8367 0.6133 0.0000
37 1 7.8207 3.2725 -1.3013
38 1 9.3274 2.3273 -1.2324
39 1 7.9275 1.7057 -2.1391
40 1 7.7656 -0.5967 -0.3986
41 1 9.3940 0.1413 -0.2306
42 1 9.0677 -0.8054 1.9629
43 1 7.3188 -0.4233 1.9575
44 1 9.3898 -1.5927 4.4973
45 1 9.1239 2.8753 1.0311
46 1 7.4584 2.9153 1.6739
47 1 4.0175 0.3767 -0.0100
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001046796479.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:21:25
Heat of formation + Delta-G solvation = -69.127516 kcal
Electronic energy + Delta-G solvation = -29316.950755 eV
Core-core repulsion = 25272.925338 eV
Total energy + Delta-G solvation = -4044.025417 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 334.173 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.91624 -41.07668 -39.86365 -39.03165 -37.33414 -35.78944 -33.80619 -32.18691
-31.42629 -30.99201 -30.29952 -28.90544 -27.54575 -27.47478 -25.62431 -24.69739
-23.50620 -22.30680 -21.76343 -20.49750 -20.03216 -18.90433 -18.09965 -17.61850
-17.32010 -17.13083 -17.00392 -16.82282 -16.51175 -16.43214 -16.05099 -15.70849
-15.56553 -15.45821 -14.73346 -14.32742 -14.18114 -14.04206 -13.72840 -13.49098
-13.42922 -13.32094 -13.24712 -13.07137 -12.83942 -12.76174 -12.50254 -12.33638
-12.22575 -12.10229 -12.03009 -11.96509 -11.69693 -11.58797 -11.57495 -10.83080
-10.74627 -10.11726 -9.82159 -9.16381 -8.87922 -7.78141 -5.21522 -0.34355
0.29737 1.45061 1.46833 1.55920 1.75061 1.90455 2.23268 2.38214
2.48969 2.70781 3.30843 3.48387 3.66809 3.71423 3.78215 3.90579
4.02185 4.03204 4.13715 4.17925 4.28977 4.36382 4.37850 4.39333
4.40161 4.64427 4.68323 4.71376 4.74510 4.78077 4.86087 4.92224
5.00181 5.02965 5.03379 5.09237 5.16667 5.31866 5.35293 5.43409
5.60860 5.66619 5.80758 6.10682 6.31574 6.39345 6.53133 7.11221
7.18078 7.77576 8.41391 9.23288
Molecular weight = 334.17amu
Principal moments of inertia in cm(-1)
A = 0.012762 B = 0.003002 C = 0.002895
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2193.564311 B = 9323.819501 C = 9670.541532
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 O -0.324 6.324
3 C 0.160 3.840
4 C -0.264 4.264
5 C 0.158 3.842
6 O -0.329 6.329
7 C 0.013 3.987
8 C -0.150 4.150
9 C -0.062 4.062
10 C 0.558 3.442
11 O -0.561 6.561
12 N -0.694 5.694
13 C 0.168 3.832
14 C -0.141 4.141
15 C -0.127 4.127
16 C 0.155 3.845
17 N -0.623 5.623
18 C -0.243 4.243
19 H 0.069 0.931
20 C -0.061 4.061
21 N -0.943 5.943
22 Si 0.979 3.021
23 H -0.289 1.289
24 H -0.287 1.287
25 H -0.273 1.273
26 C 0.135 3.865
27 C -0.162 4.162
28 H 0.066 0.934
29 H 0.072 0.928
30 H 0.122 0.878
31 H 0.172 0.828
32 H 0.072 0.928
33 H 0.068 0.932
34 H 0.122 0.878
35 H 0.129 0.871
36 H 0.409 0.591
37 H 0.056 0.944
38 H 0.072 0.928
39 H 0.080 0.920
40 H 0.102 0.898
41 H 0.087 0.913
42 H 0.078 0.922
43 H -0.009 1.009
44 H 0.249 0.751
45 H 0.025 0.975
46 H 0.008 0.992
47 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.244 2.149 -13.813 26.272
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 O -0.238 6.238
3 C 0.114 3.886
4 C -0.283 4.283
5 C 0.112 3.888
6 O -0.242 6.242
7 C -0.081 4.081
8 C -0.170 4.170
9 C -0.066 4.066
10 C 0.346 3.654
11 O -0.441 6.441
12 N -0.346 5.346
13 C 0.082 3.918
14 C -0.199 4.199
15 C -0.165 4.165
16 C 0.030 3.970
17 N -0.349 5.349
18 C -0.372 4.372
19 H 0.087 0.913
20 C -0.254 4.254
21 N -0.593 5.593
22 Si 0.807 3.193
23 H -0.216 1.216
24 H -0.213 1.213
25 H -0.199 1.199
26 C 0.009 3.991
27 C -0.181 4.181
28 H 0.085 0.915
29 H 0.091 0.909
30 H 0.140 0.860
31 H 0.189 0.811
32 H 0.091 0.909
33 H 0.086 0.914
34 H 0.140 0.860
35 H 0.147 0.853
36 H 0.247 0.753
37 H 0.075 0.925
38 H 0.091 0.909
39 H 0.099 0.901
40 H 0.120 0.880
41 H 0.106 0.894
42 H 0.096 0.904
43 H 0.009 0.991
44 H 0.058 0.942
45 H 0.043 0.957
46 H 0.026 0.974
47 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -21.637 2.801 -13.640 25.730
hybrid contribution -0.117 -0.125 1.362 1.373
sum -21.754 2.676 -12.278 25.123
Atomic orbital electron populations
1.23463 0.75946 1.06096 1.02597 1.86124 1.23915 1.25657 1.88065
1.18550 0.91418 0.84752 0.93900 1.21637 1.02214 0.90626 1.13847
1.18508 0.90242 0.85752 0.94261 1.86115 1.21335 1.28620 1.88153
1.23470 0.75959 1.05959 1.02670 1.20336 0.91248 0.98785 1.06656
1.19328 0.91913 0.93400 1.01917 1.18357 0.87017 0.84134 0.75942
1.90721 1.73527 1.28992 1.50893 1.45833 1.06345 1.08822 1.73563
1.21248 0.78903 0.97099 0.94582 1.21962 1.01573 1.00903 0.95449
1.23220 1.01711 0.94134 0.97484 1.21764 0.97948 0.88235 0.89024
1.44790 1.74567 1.02459 1.13125 1.19375 1.34320 0.92902 0.90567
0.91290 1.25553 1.02510 0.95077 1.02250 1.70010 1.55080 0.97687
1.36516 0.85081 0.77701 0.77086 0.79468 1.21565 1.21266 1.19853
1.21685 0.96103 0.91490 0.89813 1.20544 0.92685 0.97294 1.07584
0.91516 0.90922 0.86032 0.81127 0.90903 0.91374 0.86031 0.85276
0.75306 0.92452 0.90913 0.90126 0.87992 0.89406 0.90430 0.99096
0.94157 0.95736 0.97379 0.83715
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.12 9.81 113.37 1.11 1.23 16
2 O -0.32 -6.21 10.49 -92.62 -0.97 -7.18 16
3 C 0.16 3.53 6.68 22.45 0.15 3.68 16
4 C -0.26 -4.98 8.02 22.50 0.18 -4.80 16
5 C 0.16 3.75 6.68 22.45 0.15 3.90 16
6 O -0.33 -6.86 10.49 -92.47 -0.97 -7.83 16
7 C 0.01 0.13 9.81 113.37 1.11 1.24 16
8 C -0.15 -4.43 9.53 22.64 0.22 -4.22 16
9 C -0.06 -1.89 5.87 -20.11 -0.12 -2.01 16
10 C 0.56 19.94 6.99 86.80 0.61 20.54 16
11 O -0.56 -23.60 13.26 -3.85 -0.05 -23.66 16
12 N -0.69 -23.08 5.09 -420.38 -2.14 -25.22 16
13 C 0.17 6.11 0.81 4.79 0.00 6.11 16
14 C -0.14 -4.33 8.45 71.98 0.61 -3.72 16
15 C -0.13 -4.50 6.09 31.98 0.19 -4.30 16
16 C 0.15 7.58 5.87 86.85 0.51 8.09 16
17 N -0.62 -33.97 3.39 -691.99 -2.35 -36.32 16
18 C -0.24 -14.44 10.27 84.04 0.86 -13.58 16
19 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16
20 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16
21 N -0.94 -56.44 10.09 21.65 0.22 -56.22 16
22 Si 0.98 47.20 29.55 68.60 2.03 49.22 16
23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16
24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16
25 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16
26 C 0.14 6.41 6.13 86.73 0.53 6.94 16
27 C -0.16 -4.16 9.48 22.64 0.21 -3.95 16
28 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16
29 H 0.07 0.43 7.65 -2.38 -0.02 0.41 16
30 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16
31 H 0.17 1.90 4.49 -2.91 -0.01 1.88 16
32 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16
33 H 0.07 0.52 7.65 -2.38 -0.02 0.50 16
34 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16
35 H 0.13 4.14 7.64 -2.91 -0.02 4.12 16
36 H 0.41 11.58 6.50 -92.71 -0.60 10.98 16
37 H 0.06 1.97 6.38 -2.39 -0.02 1.95 16
38 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16
39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
40 H 0.10 2.85 8.04 -2.38 -0.02 2.83 16
41 H 0.09 2.98 8.05 -2.39 -0.02 2.96 16
42 H 0.08 4.29 5.87 -2.39 -0.01 4.28 16
43 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16
44 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16
45 H 0.02 1.18 7.80 -2.39 -0.02 1.16 16
46 H 0.01 0.43 6.47 -2.39 -0.02 0.42 16
47 H 0.15 3.38 6.40 -2.91 -0.02 3.36 16
Total: -1.00 -77.65 374.76 2.96 -74.69
By element:
Atomic # 1 Polarization: 20.07 SS G_CDS: 0.40 Total: 20.47 kcal
Atomic # 6 Polarization: 5.24 SS G_CDS: 6.80 Total: 12.05 kcal
Atomic # 7 Polarization: -113.49 SS G_CDS: -4.27 Total: -117.76 kcal
Atomic # 8 Polarization: -36.67 SS G_CDS: -1.99 Total: -38.66 kcal
Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal
Total: -77.65 2.96 -74.69 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046796479.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.562 kcal
(2) G-P(sol) polarization free energy of solvation -77.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.090 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.689 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.128 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds