Wall clock time and date at job start Tue Mar 31 2020 20:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35917 * 116.99713 * 2 1 4 4 C 1.38729 * 119.95186 * 359.97438 * 3 2 1 5 5 C 1.38729 * 120.18795 * 179.97438 * 4 3 2 6 6 O 1.35904 * 119.95637 * 180.02562 * 5 4 3 7 7 C 1.42896 * 116.99952 * 359.97438 * 6 5 4 8 8 C 1.38512 * 120.09141 * 0.02562 * 5 4 3 9 9 C 1.39520 * 119.90537 * 0.02562 * 8 5 4 10 10 C 1.47876 * 120.09044 * 180.02562 * 9 8 5 11 11 O 1.21543 * 120.00068 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99822 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 9 14 14 C 1.53001 * 110.64239 * 298.31923 * 13 12 10 15 15 C 1.55151 * 110.72518 * 174.97659 * 13 12 10 16 16 C 1.54909 * 101.58568 * 277.14427 * 15 13 12 17 17 N 1.47429 * 104.82732 * 322.98627 * 16 15 13 18 18 C 1.36933 * 125.64931 * 204.09143 * 17 16 15 19 19 H 1.08000 * 120.00283 * 180.02562 * 18 17 16 20 20 C 1.38820 * 119.99597 * 0.04395 * 18 17 16 21 21 N 1.31615 * 120.00096 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99658 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47379 * 90.00277 * 22 20 18 24 24 H 1.48507 * 109.46743 * 210.00121 * 22 20 18 25 25 H 1.48496 * 109.47272 * 329.99759 * 22 20 18 26 26 C 1.47023 * 108.70262 * 24.12953 * 17 16 15 27 27 C 1.38514 * 119.95305 * 180.27857 * 3 2 1 28 28 H 1.08997 * 109.47780 * 299.99927 * 1 2 3 29 29 H 1.09004 * 109.47195 * 60.00760 * 1 2 3 30 30 H 1.09006 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.90482 * 359.97438 * 4 3 2 32 32 H 1.08999 * 109.47333 * 299.99757 * 7 6 5 33 33 H 1.09009 * 109.47263 * 59.99651 * 7 6 5 34 34 H 1.09003 * 109.47507 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.04628 * 180.02562 * 8 5 4 36 36 H 0.96999 * 120.00047 * 0.02562 * 12 10 9 37 37 H 1.08997 * 109.47162 * 59.29361 * 14 13 12 38 38 H 1.08998 * 109.47255 * 179.29883 * 14 13 12 39 39 H 1.09003 * 109.46909 * 299.29893 * 14 13 12 40 40 H 1.09007 * 111.00329 * 35.21587 * 15 13 12 41 41 H 1.08996 * 111.00601 * 159.06516 * 15 13 12 42 42 H 1.08989 * 110.36728 * 204.15119 * 16 15 13 43 43 H 1.08998 * 110.36867 * 81.82176 * 16 15 13 44 44 H 0.97006 * 119.99591 * 180.02562 * 21 20 18 45 45 H 1.08997 * 109.88365 * 239.51649 * 26 17 16 46 46 H 1.09003 * 109.88142 * 118.35470 * 26 17 16 47 47 H 1.08007 * 120.04729 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2111 0.0000 4 6 1.2893 2.3739 -0.0005 5 6 1.9140 3.6126 0.0000 6 8 1.1682 4.7487 0.0000 7 6 -0.2522 4.5923 -0.0011 8 6 3.2968 3.6930 0.0005 9 6 4.0614 2.5261 0.0000 10 6 5.5380 2.6072 0.0011 11 8 6.0870 3.6915 0.0021 12 7 6.2748 1.4787 0.0011 13 6 7.7376 1.5590 0.0017 14 6 8.2394 2.2670 -1.2584 15 6 8.3650 0.1457 0.1287 16 6 8.3104 -0.0826 1.6599 17 7 8.5972 1.2383 2.2486 18 6 9.1068 1.4606 3.5000 19 1 9.2817 2.4706 3.8403 20 6 9.3991 0.3878 4.3310 21 7 9.1859 -0.8430 3.9163 22 14 10.0937 0.6911 6.0384 23 1 8.9787 0.8201 7.0107 24 1 10.9619 -0.4487 6.4292 25 1 10.8928 1.9427 6.0325 26 6 8.2445 2.2773 1.2700 27 6 3.4292 1.2825 -0.0058 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 0.2109 2.3146 -0.0014 32 1 -0.5565 4.0423 -0.8916 33 1 -0.5578 4.0413 0.8884 34 1 -0.7259 5.5740 -0.0006 35 1 3.7823 4.6577 0.0014 36 1 5.8367 0.6133 0.0000 37 1 7.8207 3.2725 -1.3013 38 1 9.3274 2.3273 -1.2324 39 1 7.9275 1.7057 -2.1391 40 1 7.7656 -0.5967 -0.3986 41 1 9.3940 0.1413 -0.2306 42 1 9.0677 -0.8054 1.9629 43 1 7.3188 -0.4233 1.9575 44 1 9.3898 -1.5927 4.4973 45 1 9.1239 2.8753 1.0311 46 1 7.4584 2.9153 1.6739 47 1 4.0175 0.3767 -0.0100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046796479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:25 Heat of formation + Delta-G solvation = -69.127516 kcal Electronic energy + Delta-G solvation = -29316.950755 eV Core-core repulsion = 25272.925338 eV Total energy + Delta-G solvation = -4044.025417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.91624 -41.07668 -39.86365 -39.03165 -37.33414 -35.78944 -33.80619 -32.18691 -31.42629 -30.99201 -30.29952 -28.90544 -27.54575 -27.47478 -25.62431 -24.69739 -23.50620 -22.30680 -21.76343 -20.49750 -20.03216 -18.90433 -18.09965 -17.61850 -17.32010 -17.13083 -17.00392 -16.82282 -16.51175 -16.43214 -16.05099 -15.70849 -15.56553 -15.45821 -14.73346 -14.32742 -14.18114 -14.04206 -13.72840 -13.49098 -13.42922 -13.32094 -13.24712 -13.07137 -12.83942 -12.76174 -12.50254 -12.33638 -12.22575 -12.10229 -12.03009 -11.96509 -11.69693 -11.58797 -11.57495 -10.83080 -10.74627 -10.11726 -9.82159 -9.16381 -8.87922 -7.78141 -5.21522 -0.34355 0.29737 1.45061 1.46833 1.55920 1.75061 1.90455 2.23268 2.38214 2.48969 2.70781 3.30843 3.48387 3.66809 3.71423 3.78215 3.90579 4.02185 4.03204 4.13715 4.17925 4.28977 4.36382 4.37850 4.39333 4.40161 4.64427 4.68323 4.71376 4.74510 4.78077 4.86087 4.92224 5.00181 5.02965 5.03379 5.09237 5.16667 5.31866 5.35293 5.43409 5.60860 5.66619 5.80758 6.10682 6.31574 6.39345 6.53133 7.11221 7.18078 7.77576 8.41391 9.23288 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012762 B = 0.003002 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.564311 B = 9323.819501 C = 9670.541532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.324 6.324 3 C 0.160 3.840 4 C -0.264 4.264 5 C 0.158 3.842 6 O -0.329 6.329 7 C 0.013 3.987 8 C -0.150 4.150 9 C -0.062 4.062 10 C 0.558 3.442 11 O -0.561 6.561 12 N -0.694 5.694 13 C 0.168 3.832 14 C -0.141 4.141 15 C -0.127 4.127 16 C 0.155 3.845 17 N -0.623 5.623 18 C -0.243 4.243 19 H 0.069 0.931 20 C -0.061 4.061 21 N -0.943 5.943 22 Si 0.979 3.021 23 H -0.289 1.289 24 H -0.287 1.287 25 H -0.273 1.273 26 C 0.135 3.865 27 C -0.162 4.162 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.172 0.828 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.409 0.591 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.078 0.922 43 H -0.009 1.009 44 H 0.249 0.751 45 H 0.025 0.975 46 H 0.008 0.992 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.244 2.149 -13.813 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C 0.114 3.886 4 C -0.283 4.283 5 C 0.112 3.888 6 O -0.242 6.242 7 C -0.081 4.081 8 C -0.170 4.170 9 C -0.066 4.066 10 C 0.346 3.654 11 O -0.441 6.441 12 N -0.346 5.346 13 C 0.082 3.918 14 C -0.199 4.199 15 C -0.165 4.165 16 C 0.030 3.970 17 N -0.349 5.349 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.254 4.254 21 N -0.593 5.593 22 Si 0.807 3.193 23 H -0.216 1.216 24 H -0.213 1.213 25 H -0.199 1.199 26 C 0.009 3.991 27 C -0.181 4.181 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.189 0.811 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.247 0.753 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.009 0.991 44 H 0.058 0.942 45 H 0.043 0.957 46 H 0.026 0.974 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.637 2.801 -13.640 25.730 hybrid contribution -0.117 -0.125 1.362 1.373 sum -21.754 2.676 -12.278 25.123 Atomic orbital electron populations 1.23463 0.75946 1.06096 1.02597 1.86124 1.23915 1.25657 1.88065 1.18550 0.91418 0.84752 0.93900 1.21637 1.02214 0.90626 1.13847 1.18508 0.90242 0.85752 0.94261 1.86115 1.21335 1.28620 1.88153 1.23470 0.75959 1.05959 1.02670 1.20336 0.91248 0.98785 1.06656 1.19328 0.91913 0.93400 1.01917 1.18357 0.87017 0.84134 0.75942 1.90721 1.73527 1.28992 1.50893 1.45833 1.06345 1.08822 1.73563 1.21248 0.78903 0.97099 0.94582 1.21962 1.01573 1.00903 0.95449 1.23220 1.01711 0.94134 0.97484 1.21764 0.97948 0.88235 0.89024 1.44790 1.74567 1.02459 1.13125 1.19375 1.34320 0.92902 0.90567 0.91290 1.25553 1.02510 0.95077 1.02250 1.70010 1.55080 0.97687 1.36516 0.85081 0.77701 0.77086 0.79468 1.21565 1.21266 1.19853 1.21685 0.96103 0.91490 0.89813 1.20544 0.92685 0.97294 1.07584 0.91516 0.90922 0.86032 0.81127 0.90903 0.91374 0.86031 0.85276 0.75306 0.92452 0.90913 0.90126 0.87992 0.89406 0.90430 0.99096 0.94157 0.95736 0.97379 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -6.21 10.49 -92.62 -0.97 -7.18 16 3 C 0.16 3.53 6.68 22.45 0.15 3.68 16 4 C -0.26 -4.98 8.02 22.50 0.18 -4.80 16 5 C 0.16 3.75 6.68 22.45 0.15 3.90 16 6 O -0.33 -6.86 10.49 -92.47 -0.97 -7.83 16 7 C 0.01 0.13 9.81 113.37 1.11 1.24 16 8 C -0.15 -4.43 9.53 22.64 0.22 -4.22 16 9 C -0.06 -1.89 5.87 -20.11 -0.12 -2.01 16 10 C 0.56 19.94 6.99 86.80 0.61 20.54 16 11 O -0.56 -23.60 13.26 -3.85 -0.05 -23.66 16 12 N -0.69 -23.08 5.09 -420.38 -2.14 -25.22 16 13 C 0.17 6.11 0.81 4.79 0.00 6.11 16 14 C -0.14 -4.33 8.45 71.98 0.61 -3.72 16 15 C -0.13 -4.50 6.09 31.98 0.19 -4.30 16 16 C 0.15 7.58 5.87 86.85 0.51 8.09 16 17 N -0.62 -33.97 3.39 -691.99 -2.35 -36.32 16 18 C -0.24 -14.44 10.27 84.04 0.86 -13.58 16 19 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 21 N -0.94 -56.44 10.09 21.65 0.22 -56.22 16 22 Si 0.98 47.20 29.55 68.60 2.03 49.22 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 26 C 0.14 6.41 6.13 86.73 0.53 6.94 16 27 C -0.16 -4.16 9.48 22.64 0.21 -3.95 16 28 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 29 H 0.07 0.43 7.65 -2.38 -0.02 0.41 16 30 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.17 1.90 4.49 -2.91 -0.01 1.88 16 32 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 33 H 0.07 0.52 7.65 -2.38 -0.02 0.50 16 34 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.13 4.14 7.64 -2.91 -0.02 4.12 16 36 H 0.41 11.58 6.50 -92.71 -0.60 10.98 16 37 H 0.06 1.97 6.38 -2.39 -0.02 1.95 16 38 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.10 2.85 8.04 -2.38 -0.02 2.83 16 41 H 0.09 2.98 8.05 -2.39 -0.02 2.96 16 42 H 0.08 4.29 5.87 -2.39 -0.01 4.28 16 43 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 44 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 45 H 0.02 1.18 7.80 -2.39 -0.02 1.16 16 46 H 0.01 0.43 6.47 -2.39 -0.02 0.42 16 47 H 0.15 3.38 6.40 -2.91 -0.02 3.36 16 Total: -1.00 -77.65 374.76 2.96 -74.69 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.40 Total: 20.47 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 6.80 Total: 12.05 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -4.27 Total: -117.76 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -1.99 Total: -38.66 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -77.65 2.96 -74.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046796479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.562 kcal (2) G-P(sol) polarization free energy of solvation -77.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds