Wall clock time and date at job start Tue Mar 31 2020 20:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35717 * 116.99679 * 2 1 4 4 C 1.39188 * 119.86292 * 359.97438 * 3 2 1 5 5 C 1.37546 * 120.23736 * 180.02562 * 4 3 2 6 6 C 1.39857 * 119.96249 * 0.25601 * 5 4 3 7 7 C 1.47306 * 120.13211 * 179.72780 * 6 5 4 8 8 O 1.21616 * 120.00229 * 179.97438 * 7 6 5 9 9 N 1.34780 * 119.99894 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00041 * 179.97438 * 9 7 6 11 11 C 1.53006 * 110.88367 * 62.42826 * 10 9 7 12 12 C 1.55153 * 111.00591 * 186.35431 * 10 9 7 13 13 C 1.54318 * 102.94349 * 82.57505 * 12 10 9 14 14 N 1.47026 * 107.27310 * 22.19358 * 13 12 10 15 15 C 1.36935 * 125.64640 * 181.02637 * 14 13 12 16 16 H 1.07998 * 119.99293 * 180.02562 * 15 14 13 17 17 C 1.38806 * 120.00516 * 0.03777 * 15 14 13 18 18 N 1.31622 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00210 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47025 * 59.99990 * 19 17 15 21 21 H 1.48498 * 109.47258 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46885 * 299.99836 * 19 17 15 23 23 C 1.47430 * 108.70018 * 1.05995 * 14 13 12 24 24 C 1.40290 * 119.73474 * 359.53574 * 6 5 4 25 25 O 1.35658 * 120.12503 * 180.21144 * 24 6 5 26 26 C 1.42902 * 117.00212 * 180.23294 * 25 24 6 27 27 C 1.38446 * 119.75805 * 0.44124 * 24 6 5 28 28 H 1.09001 * 109.47492 * 300.00017 * 1 2 3 29 29 H 1.09001 * 109.47365 * 60.00642 * 1 2 3 30 30 H 1.09006 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.88270 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.01298 * 179.97438 * 5 4 3 33 33 H 0.97003 * 120.00028 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.46732 * 60.70272 * 11 10 9 35 35 H 1.09002 * 109.46938 * 180.69850 * 11 10 9 36 36 H 1.08993 * 109.47120 * 300.70353 * 11 10 9 37 37 H 1.09004 * 110.71932 * 200.94149 * 12 10 9 38 38 H 1.08997 * 110.72063 * 324.20722 * 12 10 9 39 39 H 1.09001 * 109.88080 * 262.77744 * 13 12 10 40 40 H 1.09004 * 110.01352 * 141.68196 * 13 12 10 41 41 H 0.97005 * 119.99810 * 180.02562 * 18 17 15 42 42 H 1.08999 * 110.36068 * 217.03402 * 23 14 13 43 43 H 1.08999 * 110.45655 * 94.76013 * 23 14 13 44 44 H 1.09004 * 109.46966 * 300.00053 * 26 25 24 45 45 H 1.08993 * 109.47032 * 59.99340 * 26 25 24 46 46 H 1.09001 * 109.46645 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.98487 * 179.76820 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2841 2.3748 -0.0005 5 6 1.9005 3.6044 -0.0011 6 6 3.2967 3.6859 -0.0065 7 6 3.9606 5.0008 -0.0131 8 8 5.1749 5.0689 -0.0174 9 7 3.2224 6.1285 -0.0145 10 6 3.8827 7.4362 -0.0206 11 6 4.7155 7.6208 -1.2908 12 6 2.8488 8.5820 0.1392 13 6 2.6266 8.6368 1.6653 14 7 3.8049 8.0284 2.3001 15 6 3.9906 7.8648 3.6470 16 1 4.8955 7.4046 4.0152 17 6 3.0158 8.2904 4.5388 18 7 1.9126 8.8507 4.0898 19 14 3.2694 8.0679 6.3760 20 1 4.4885 8.8023 6.7999 21 1 2.0912 8.6003 7.1065 22 1 3.4299 6.6237 6.6822 23 6 4.7538 7.6243 1.2466 24 6 4.0623 2.5103 -0.0015 25 8 5.4171 2.5802 -0.0024 26 6 6.1306 1.3420 -0.0022 27 6 3.4302 1.2786 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2059 2.3134 -0.0005 32 1 1.3065 4.5064 -0.0019 33 1 2.2539 6.0742 -0.0108 34 1 4.0646 7.5641 -2.1633 35 1 5.2055 8.5942 -1.2657 36 1 5.4694 6.8358 -1.3482 37 1 3.2581 9.5243 -0.2251 38 1 1.9204 8.3384 -0.3773 39 1 1.7311 8.0744 1.9299 40 1 2.5235 9.6721 1.9903 41 1 1.2315 9.1484 4.7130 42 1 5.2413 6.6870 1.5144 43 1 5.4971 8.4047 1.0836 44 1 5.8673 0.7711 0.8882 45 1 5.8661 0.7703 -0.8917 46 1 7.2024 1.5404 -0.0025 47 1 4.0160 0.3713 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046796624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:30 Heat of formation + Delta-G solvation = -45.093026 kcal Electronic energy + Delta-G solvation = -29869.051389 eV Core-core repulsion = 25826.068186 eV Total energy + Delta-G solvation = -4042.983203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.79481 -39.55591 -38.97418 -37.13473 -36.29437 -33.80375 -32.05864 -30.87784 -30.22906 -29.63694 -28.57442 -27.55026 -27.25105 -25.56594 -23.88649 -23.28585 -22.17603 -20.77902 -20.08823 -18.99223 -18.79063 -17.46051 -16.93953 -16.54291 -16.34010 -16.14629 -15.63239 -15.28409 -14.96219 -14.82985 -14.53472 -14.36749 -13.86536 -13.64207 -13.20463 -13.15182 -12.83074 -12.67907 -12.59999 -12.50855 -11.96041 -11.82074 -11.76120 -11.62036 -11.58975 -11.54187 -11.17292 -10.84031 -10.80700 -10.73925 -10.27571 -10.26014 -10.03480 -9.89791 -9.56808 -9.07107 -8.76786 -8.53800 -8.40865 -8.11878 -6.70776 -5.63104 -2.94000 0.94154 1.27713 2.89117 3.12811 3.27105 3.46391 3.49818 3.51759 3.63429 4.01381 4.52518 4.58168 4.79007 4.82767 4.87476 4.91151 5.01207 5.09918 5.11735 5.18395 5.25739 5.33289 5.45286 5.47196 5.48871 5.56833 5.71939 5.81618 5.90046 6.05517 6.11218 6.16965 6.25019 6.26097 6.35773 6.46072 6.49294 6.65625 6.81069 6.96660 7.03742 7.29131 7.34495 7.62719 7.64359 7.87778 8.09586 8.34735 8.82543 9.32064 9.92275 10.58898 11.49058 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.003762 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.239231 B = 7441.527252 C = 8239.824936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.186 3.814 4 C -0.253 4.253 5 C -0.005 4.005 6 C -0.199 4.199 7 C 0.566 3.434 8 O -0.522 6.522 9 N -0.702 5.702 10 C 0.159 3.841 11 C -0.149 4.149 12 C -0.147 4.147 13 C 0.178 3.822 14 N -0.603 5.603 15 C -0.218 4.218 16 H 0.075 0.925 17 C -0.010 4.010 18 N -0.926 5.926 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.287 1.287 23 C 0.131 3.869 24 C 0.222 3.778 25 O -0.271 6.271 26 C 0.020 3.980 27 C -0.259 4.259 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.393 0.607 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.250 0.750 42 H 0.057 0.943 43 H 0.024 0.976 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.102 0.898 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 -15.651 -13.508 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.140 3.860 4 C -0.272 4.272 5 C -0.024 4.024 6 C -0.203 4.203 7 C 0.353 3.647 8 O -0.399 6.399 9 N -0.353 5.353 10 C 0.073 3.927 11 C -0.207 4.207 12 C -0.185 4.185 13 C 0.053 3.947 14 N -0.329 5.329 15 C -0.346 4.346 16 H 0.093 0.907 17 C -0.206 4.206 18 N -0.575 5.575 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C 0.004 3.996 24 C 0.173 3.827 25 O -0.181 6.181 26 C -0.075 4.075 27 C -0.278 4.278 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.228 0.772 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.121 0.879 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.680 -15.558 -13.298 20.535 hybrid contribution -0.859 -0.311 1.156 1.473 sum -2.539 -15.869 -12.142 20.142 Atomic orbital electron populations 1.23127 0.77867 1.04059 1.01899 1.86013 1.21866 1.27017 1.87872 1.18840 0.91481 0.84158 0.91561 1.21031 1.00302 0.91814 1.14080 1.20970 0.92419 0.97716 0.91278 1.19395 0.92838 0.92375 1.15667 1.17679 0.87007 0.83220 0.76765 1.90760 1.13022 1.87003 1.49142 1.45679 1.09436 1.05101 1.75126 1.21432 0.93890 0.81738 0.95681 1.21986 1.00291 1.02462 0.95979 1.23220 0.97476 0.96857 1.00975 1.21136 0.90541 0.98227 0.84762 1.44428 1.16995 1.70210 1.01228 1.19030 1.02280 1.32972 0.80367 0.90696 1.24731 0.96698 1.01321 0.97830 1.69942 1.08556 1.46476 1.32498 0.86228 0.76814 0.77679 0.85267 1.21242 1.21688 1.21345 1.21897 0.92088 0.98252 0.87358 1.18644 0.83200 0.91640 0.89227 1.86442 1.14119 1.31373 1.86203 1.23178 0.97486 0.85689 1.01191 1.20291 0.92612 0.97432 1.17499 0.92134 0.92289 0.88156 0.84795 0.84526 0.77235 0.93255 0.91990 0.90947 0.90940 0.91898 0.93780 0.93909 0.93948 0.92465 0.95867 0.92525 0.92644 0.87929 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.80 101.05 0.99 1.16 16 2 O -0.32 -3.34 10.48 -18.86 -0.20 -3.54 16 3 C 0.19 2.25 6.69 -39.06 -0.26 1.99 16 4 C -0.25 -2.90 9.01 -39.48 -0.36 -3.26 16 5 C 0.00 -0.06 9.52 -39.23 -0.37 -0.44 16 6 C -0.20 -3.19 5.89 -104.83 -0.62 -3.81 16 7 C 0.57 10.56 7.15 -12.57 -0.09 10.48 16 8 O -0.52 -11.18 11.92 -16.66 -0.20 -11.38 16 9 N -0.70 -12.29 5.12 -46.72 -0.24 -12.52 16 10 C 0.16 2.96 0.82 -129.67 -0.11 2.85 16 11 C -0.15 -2.40 8.62 37.16 0.32 -2.08 16 12 C -0.15 -2.67 5.99 -24.90 -0.15 -2.82 16 13 C 0.18 4.29 5.37 -3.07 -0.02 4.28 16 14 N -0.60 -15.92 3.39 -170.07 -0.58 -16.49 16 15 C -0.22 -6.34 10.28 -15.06 -0.15 -6.50 16 16 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 18 N -0.93 -27.39 10.31 55.49 0.57 -26.82 16 19 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C 0.13 3.01 6.11 -2.52 -0.02 2.99 16 24 C 0.22 3.39 6.70 -38.73 -0.26 3.13 16 25 O -0.27 -4.27 8.56 -40.60 -0.35 -4.61 16 26 C 0.02 0.20 9.81 101.05 0.99 1.19 16 27 C -0.26 -3.31 8.96 -39.34 -0.35 -3.66 16 28 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 29 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.13 1.16 6.27 -52.49 -0.33 0.83 16 32 H 0.14 1.52 6.39 -52.49 -0.34 1.19 16 33 H 0.39 6.01 6.51 -40.82 -0.27 5.74 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 36 H 0.07 1.28 6.45 -51.93 -0.33 0.95 16 37 H 0.07 1.23 8.04 -51.93 -0.42 0.82 16 38 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 39 H 0.04 1.15 7.38 -51.93 -0.38 0.77 16 40 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.06 1.44 6.31 -51.93 -0.33 1.11 16 43 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16 44 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 45 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 46 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.14 1.50 6.29 -52.49 -0.33 1.17 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -35.44 373.38 -7.70 -43.15 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.77 Total: 3.67 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -0.55 Total: 5.11 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.24 Total: -55.84 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.74 Total: -19.53 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.44 -7.70 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046796624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.946 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds