Wall clock time and date at job start Tue Mar 31 2020 20:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35717 * 116.99679 * 2 1 4 4 C 1.39188 * 119.86292 * 359.97438 * 3 2 1 5 5 C 1.37546 * 120.23736 * 180.02562 * 4 3 2 6 6 C 1.39857 * 119.96249 * 0.25601 * 5 4 3 7 7 C 1.47306 * 120.13211 * 179.72780 * 6 5 4 8 8 O 1.21616 * 120.00229 * 179.97438 * 7 6 5 9 9 N 1.34780 * 119.99894 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00041 * 179.97438 * 9 7 6 11 11 C 1.53006 * 110.88367 * 62.42826 * 10 9 7 12 12 C 1.55153 * 111.00591 * 186.35431 * 10 9 7 13 13 C 1.54318 * 102.94349 * 82.57505 * 12 10 9 14 14 N 1.47026 * 107.27310 * 22.19358 * 13 12 10 15 15 C 1.36935 * 125.64640 * 181.02637 * 14 13 12 16 16 H 1.07998 * 119.99293 * 180.02562 * 15 14 13 17 17 C 1.38806 * 120.00516 * 0.03777 * 15 14 13 18 18 N 1.31622 * 119.99740 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00210 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47025 * 59.99990 * 19 17 15 21 21 H 1.48498 * 109.47258 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46885 * 299.99836 * 19 17 15 23 23 C 1.47430 * 108.70018 * 1.05995 * 14 13 12 24 24 C 1.40290 * 119.73474 * 359.53574 * 6 5 4 25 25 O 1.35658 * 120.12503 * 180.21144 * 24 6 5 26 26 C 1.42902 * 117.00212 * 180.23294 * 25 24 6 27 27 C 1.38446 * 119.75805 * 0.44124 * 24 6 5 28 28 H 1.09001 * 109.47492 * 300.00017 * 1 2 3 29 29 H 1.09001 * 109.47365 * 60.00642 * 1 2 3 30 30 H 1.09006 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.88270 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.01298 * 179.97438 * 5 4 3 33 33 H 0.97003 * 120.00028 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.46732 * 60.70272 * 11 10 9 35 35 H 1.09002 * 109.46938 * 180.69850 * 11 10 9 36 36 H 1.08993 * 109.47120 * 300.70353 * 11 10 9 37 37 H 1.09004 * 110.71932 * 200.94149 * 12 10 9 38 38 H 1.08997 * 110.72063 * 324.20722 * 12 10 9 39 39 H 1.09001 * 109.88080 * 262.77744 * 13 12 10 40 40 H 1.09004 * 110.01352 * 141.68196 * 13 12 10 41 41 H 0.97005 * 119.99810 * 180.02562 * 18 17 15 42 42 H 1.08999 * 110.36068 * 217.03402 * 23 14 13 43 43 H 1.08999 * 110.45655 * 94.76013 * 23 14 13 44 44 H 1.09004 * 109.46966 * 300.00053 * 26 25 24 45 45 H 1.08993 * 109.47032 * 59.99340 * 26 25 24 46 46 H 1.09001 * 109.46645 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.98487 * 179.76820 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2841 2.3748 -0.0005 5 6 1.9005 3.6044 -0.0011 6 6 3.2967 3.6859 -0.0065 7 6 3.9606 5.0008 -0.0131 8 8 5.1749 5.0689 -0.0174 9 7 3.2224 6.1285 -0.0145 10 6 3.8827 7.4362 -0.0206 11 6 4.7155 7.6208 -1.2908 12 6 2.8488 8.5820 0.1392 13 6 2.6266 8.6368 1.6653 14 7 3.8049 8.0284 2.3001 15 6 3.9906 7.8648 3.6470 16 1 4.8955 7.4046 4.0152 17 6 3.0158 8.2904 4.5388 18 7 1.9126 8.8507 4.0898 19 14 3.2694 8.0679 6.3760 20 1 4.4885 8.8023 6.7999 21 1 2.0912 8.6003 7.1065 22 1 3.4299 6.6237 6.6822 23 6 4.7538 7.6243 1.2466 24 6 4.0623 2.5103 -0.0015 25 8 5.4171 2.5802 -0.0024 26 6 6.1306 1.3420 -0.0022 27 6 3.4302 1.2786 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2059 2.3134 -0.0005 32 1 1.3065 4.5064 -0.0019 33 1 2.2539 6.0742 -0.0108 34 1 4.0646 7.5641 -2.1633 35 1 5.2055 8.5942 -1.2657 36 1 5.4694 6.8358 -1.3482 37 1 3.2581 9.5243 -0.2251 38 1 1.9204 8.3384 -0.3773 39 1 1.7311 8.0744 1.9299 40 1 2.5235 9.6721 1.9903 41 1 1.2315 9.1484 4.7130 42 1 5.2413 6.6870 1.5144 43 1 5.4971 8.4047 1.0836 44 1 5.8673 0.7711 0.8882 45 1 5.8661 0.7703 -0.8917 46 1 7.2024 1.5404 -0.0025 47 1 4.0160 0.3713 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046796624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:29 Heat of formation + Delta-G solvation = -69.022071 kcal Electronic energy + Delta-G solvation = -29870.089031 eV Core-core repulsion = 25826.068186 eV Total energy + Delta-G solvation = -4044.020845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.84982 -40.83081 -39.99488 -38.67319 -37.35639 -35.60967 -33.71560 -32.26725 -31.38030 -30.97461 -30.24587 -28.21055 -28.12508 -27.49007 -25.49511 -24.58235 -23.17883 -22.29227 -21.72773 -20.38329 -19.86711 -19.01736 -18.30809 -17.83605 -17.31171 -16.99387 -16.89809 -16.55258 -16.47009 -16.06856 -15.87541 -15.72452 -15.51136 -15.15838 -14.66476 -14.21829 -14.04765 -13.89834 -13.66565 -13.60965 -13.49576 -13.31485 -13.19409 -13.01508 -12.81008 -12.73255 -12.52167 -12.42782 -12.11202 -12.03434 -11.97779 -11.94277 -11.67725 -11.63701 -11.49796 -10.69292 -10.52463 -9.91208 -9.71298 -9.15893 -8.83535 -7.84458 -5.17581 -0.10787 0.30359 1.42724 1.45682 1.52137 1.94596 2.09969 2.28861 2.42143 2.48988 2.83094 3.33145 3.57186 3.65720 3.73795 3.91150 3.97653 4.09366 4.09729 4.16092 4.23143 4.35698 4.39935 4.42741 4.43066 4.50950 4.67258 4.70485 4.72170 4.77923 4.83867 4.88860 4.93282 4.96671 5.07075 5.10551 5.14774 5.20806 5.39891 5.42402 5.43655 5.68240 5.75027 5.82709 6.21796 6.22136 6.38076 6.75459 7.13585 7.45626 7.79232 8.44013 9.25150 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.003762 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.239231 B = 7441.527252 C = 8239.824936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.191 3.809 4 C -0.248 4.248 5 C -0.004 4.004 6 C -0.234 4.234 7 C 0.560 3.440 8 O -0.560 6.560 9 N -0.699 5.699 10 C 0.169 3.831 11 C -0.138 4.138 12 C -0.127 4.127 13 C 0.186 3.814 14 N -0.620 5.620 15 C -0.244 4.244 16 H 0.064 0.936 17 C -0.056 4.056 18 N -0.944 5.944 19 Si 0.972 3.028 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.283 1.283 23 C 0.128 3.872 24 C 0.207 3.793 25 O -0.307 6.307 26 C 0.012 3.988 27 C -0.263 4.263 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.166 0.834 32 H 0.153 0.847 33 H 0.404 0.596 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.018 0.982 40 H 0.009 0.991 41 H 0.248 0.752 42 H 0.028 0.972 43 H 0.022 0.978 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.418 -16.949 -14.584 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.143 3.857 4 C -0.266 4.266 5 C -0.023 4.023 6 C -0.239 4.239 7 C 0.349 3.651 8 O -0.440 6.440 9 N -0.351 5.351 10 C 0.081 3.919 11 C -0.197 4.197 12 C -0.166 4.166 13 C 0.061 3.939 14 N -0.346 5.346 15 C -0.373 4.373 16 H 0.082 0.918 17 C -0.250 4.250 18 N -0.593 5.593 19 Si 0.800 3.200 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.210 1.210 23 C 0.002 3.998 24 C 0.158 3.842 25 O -0.218 6.218 26 C -0.082 4.082 27 C -0.283 4.283 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.183 0.817 32 H 0.170 0.830 33 H 0.241 0.759 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.037 0.963 40 H 0.027 0.973 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.040 0.960 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.131 0.869 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.449 -16.872 -14.398 22.447 hybrid contribution -0.338 -0.034 1.517 1.555 sum -3.787 -16.907 -12.881 21.589 Atomic orbital electron populations 1.23489 0.75627 1.06065 1.02891 1.86020 1.24143 1.26129 1.87267 1.18988 0.91440 0.85047 0.90177 1.21349 1.01849 0.90829 1.12603 1.21170 0.91291 0.99195 0.90609 1.19412 0.94251 0.91291 1.18896 1.18162 0.86759 0.84326 0.75812 1.90726 1.14665 1.87652 1.50939 1.45639 1.09992 1.04571 1.74887 1.21321 0.93480 0.82512 0.94546 1.21900 0.99917 1.02445 0.95414 1.23102 0.99203 0.97678 0.96597 1.20946 0.88900 0.95409 0.88624 1.44670 1.18340 1.70463 1.01151 1.19271 1.02310 1.33424 0.82295 0.91778 1.25476 0.96496 1.01146 1.01839 1.70135 1.08896 1.46731 1.33504 0.85257 0.76874 0.77588 0.80235 1.20637 1.21166 1.20988 1.21978 0.92385 0.96529 0.88895 1.18851 0.83233 0.92321 0.89753 1.86385 1.14805 1.34226 1.86427 1.23444 0.97641 0.84512 1.02609 1.20444 0.93408 0.97123 1.17301 0.91514 0.90826 0.85851 0.81650 0.82957 0.75947 0.90419 0.90713 0.92858 0.88973 0.88263 0.96339 0.97264 0.94276 0.95409 0.95989 0.91530 0.90674 0.86944 0.82508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.80 113.37 1.11 1.24 16 2 O -0.32 -5.96 10.48 -90.38 -0.95 -6.90 16 3 C 0.19 4.22 6.69 22.61 0.15 4.37 16 4 C -0.25 -5.07 9.01 22.33 0.20 -4.87 16 5 C 0.00 -0.10 9.52 22.50 0.21 0.12 16 6 C -0.23 -7.59 5.89 -20.00 -0.12 -7.71 16 7 C 0.56 21.41 7.15 86.63 0.62 22.03 16 8 O -0.56 -25.09 11.92 16.88 0.20 -24.88 16 9 N -0.70 -24.27 5.12 -419.97 -2.15 -26.42 16 10 C 0.17 6.16 0.82 5.00 0.00 6.16 16 11 C -0.14 -4.25 8.62 71.98 0.62 -3.63 16 12 C -0.13 -4.43 5.99 31.78 0.19 -4.24 16 13 C 0.19 9.08 5.37 86.73 0.47 9.54 16 14 N -0.62 -33.74 3.39 -691.98 -2.35 -36.09 16 15 C -0.24 -14.65 10.28 84.03 0.86 -13.79 16 16 H 0.06 3.87 7.83 -2.91 -0.02 3.84 16 17 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 18 N -0.94 -56.79 10.31 21.65 0.22 -56.57 16 19 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 20 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 23 C 0.13 6.07 6.11 86.85 0.53 6.60 16 24 C 0.21 6.40 6.70 22.82 0.15 6.55 16 25 O -0.31 -10.00 8.56 -68.77 -0.59 -10.59 16 26 C 0.01 0.25 9.81 113.37 1.11 1.36 16 27 C -0.26 -6.49 8.96 22.43 0.20 -6.29 16 28 H 0.07 0.60 7.65 -2.39 -0.02 0.58 16 29 H 0.07 0.54 7.65 -2.39 -0.02 0.52 16 30 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.17 2.24 6.27 -2.91 -0.02 2.23 16 32 H 0.15 3.13 6.39 -2.91 -0.02 3.11 16 33 H 0.40 11.91 6.51 -92.71 -0.60 11.31 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 2.09 8.13 -2.39 -0.02 2.07 16 36 H 0.05 1.87 6.45 -2.39 -0.02 1.86 16 37 H 0.09 2.89 8.04 -2.38 -0.02 2.87 16 38 H 0.10 2.77 8.05 -2.39 -0.02 2.75 16 39 H 0.02 0.98 7.38 -2.39 -0.02 0.96 16 40 H 0.01 0.50 7.50 -2.38 -0.02 0.48 16 41 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 42 H 0.03 1.47 6.31 -2.39 -0.02 1.45 16 43 H 0.02 1.05 8.03 -2.39 -0.02 1.03 16 44 H 0.07 1.19 7.66 -2.39 -0.02 1.17 16 45 H 0.07 1.19 7.66 -2.39 -0.02 1.18 16 46 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.16 3.15 6.29 -2.91 -0.02 3.13 16 Total: -1.00 -80.64 373.38 3.60 -77.04 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.39 Total: 20.18 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 6.79 Total: 14.62 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -4.28 Total: -119.08 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -1.33 Total: -42.38 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -80.64 3.60 -77.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046796624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.019 kcal (2) G-P(sol) polarization free energy of solvation -80.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds