Wall clock time and date at job start Tue Mar 31 2020 20:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.36005 * 117.00182 * 2 1 4 4 C 1.38472 * 120.00182 * 0.02562 * 3 2 1 5 5 C 1.38497 * 120.33834 * 180.02562 * 4 3 2 6 6 C 1.37795 * 120.34188 * 359.95162 * 5 4 3 7 7 C 1.39763 * 119.99993 * 0.02562 * 6 5 4 8 8 C 1.47550 * 120.16656 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00012 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00024 * 359.97438 * 8 7 6 11 11 C 1.46493 * 120.00208 * 180.02562 * 10 8 7 12 12 C 1.52998 * 110.88785 * 62.42799 * 11 10 8 13 13 C 1.55162 * 111.00845 * 186.35413 * 11 10 8 14 14 C 1.54319 * 102.94172 * 82.56769 * 13 11 10 15 15 N 1.47025 * 107.27347 * 22.19886 * 14 13 11 16 16 C 1.36934 * 125.65109 * 181.01937 * 15 14 13 17 17 H 1.08002 * 120.00062 * 180.02562 * 16 15 14 18 18 C 1.38813 * 119.99944 * 0.03813 * 16 15 14 19 19 N 1.31615 * 119.99748 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99976 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47327 * 90.00471 * 20 18 16 22 22 H 1.48498 * 109.47302 * 210.00465 * 20 18 16 23 23 H 1.48508 * 109.47130 * 329.99991 * 20 18 16 24 24 C 1.47425 * 108.70001 * 1.05849 * 15 14 13 25 25 C 1.39134 * 120.00601 * 179.72348 * 3 2 1 26 26 O 1.35735 * 120.17189 * 0.02562 * 25 3 2 27 27 C 1.42898 * 117.00531 * 89.99382 * 26 25 3 28 28 H 1.09002 * 109.47220 * 299.99844 * 1 2 3 29 29 H 1.08996 * 109.47672 * 59.99788 * 1 2 3 30 30 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.83236 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.83291 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.99963 * 180.02562 * 6 5 4 34 34 H 0.97008 * 120.00019 * 0.02562 * 10 8 7 35 35 H 1.09005 * 109.46767 * 60.69909 * 12 11 10 36 36 H 1.09000 * 109.47390 * 180.69712 * 12 11 10 37 37 H 1.08994 * 109.47531 * 300.70632 * 12 11 10 38 38 H 1.08990 * 110.72121 * 200.93714 * 13 11 10 39 39 H 1.09001 * 110.71285 * 324.21040 * 13 11 10 40 40 H 1.08994 * 109.88997 * 262.77780 * 14 13 11 41 41 H 1.09008 * 109.87898 * 141.61236 * 14 13 11 42 42 H 0.97004 * 119.99954 * 179.97438 * 19 18 16 43 43 H 1.09008 * 110.36481 * 217.03337 * 24 15 14 44 44 H 1.08994 * 110.46646 * 94.75903 * 24 15 14 45 45 H 1.09007 * 109.47064 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.47450 * 299.99904 * 27 26 25 47 47 H 1.08999 * 109.47312 * 60.00251 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2923 2.3732 0.0005 5 6 1.9138 3.6108 0.0000 6 6 3.2890 3.6992 -0.0001 7 6 4.0639 2.5361 -0.0001 8 6 5.5367 2.6264 0.0004 9 8 6.2080 1.6126 -0.0002 10 7 6.1378 3.8327 0.0004 11 6 7.6000 3.9224 0.0003 12 6 8.1850 3.2955 -1.2668 13 6 8.0671 5.3934 0.1606 14 6 7.9958 5.6143 1.6863 15 7 8.0624 4.2906 2.3227 16 6 8.0093 4.0489 3.6695 17 1 8.0669 3.0357 4.0390 18 6 7.8811 5.1062 4.5598 19 7 7.8101 6.3408 4.1094 20 14 7.8094 4.7766 6.3971 21 1 9.1844 4.7964 6.9576 22 1 6.9909 5.8255 7.0566 23 1 7.1957 3.4458 6.6377 24 6 8.1967 3.2666 1.2706 25 6 3.4358 1.2847 0.0058 26 8 4.1786 0.1486 0.0110 27 6 4.5390 -0.3968 -1.2597 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2139 2.3136 0.0005 32 1 1.3178 4.5114 0.0000 33 1 3.7679 4.6672 -0.0001 34 1 5.6023 4.6415 0.0004 35 1 7.8112 3.8280 -2.1415 36 1 9.2724 3.3636 -1.2373 37 1 7.8879 2.2484 -1.3247 38 1 9.0886 5.5150 -0.1994 39 1 7.3904 6.0715 -0.3592 40 1 7.0574 6.1039 1.9466 41 1 8.8378 6.2250 2.0121 42 1 7.7202 7.0796 4.7315 43 1 7.6323 2.3728 1.5369 44 1 9.2461 3.0184 1.1122 45 1 5.1293 -1.3013 -1.1127 46 1 3.6362 -0.6397 -1.8201 47 1 5.1260 0.3343 -1.8156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046797756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:38 Heat of formation + Delta-G solvation = -64.641851 kcal Electronic energy + Delta-G solvation = -30194.615626 eV Core-core repulsion = 26150.784722 eV Total energy + Delta-G solvation = -4043.830904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.89290 -40.85476 -39.31974 -38.47096 -37.80296 -35.64632 -33.77623 -32.24502 -31.31194 -30.87032 -30.23249 -28.28390 -27.75322 -27.50874 -25.58115 -24.69439 -23.30133 -22.32954 -21.72660 -20.44773 -19.73996 -18.86602 -18.31184 -17.73273 -17.47256 -17.04684 -16.93380 -16.58422 -16.18635 -15.93766 -15.70673 -15.63726 -15.48379 -15.45238 -14.83239 -14.25690 -14.17214 -13.89281 -13.58426 -13.51074 -13.47539 -13.31422 -13.13617 -12.89717 -12.83163 -12.75090 -12.66204 -12.16430 -12.07563 -12.04849 -12.02233 -11.95710 -11.69911 -11.53349 -11.01832 -10.70944 -10.54980 -10.06068 -9.83737 -9.23036 -8.85436 -7.85999 -5.19034 -0.31747 0.22293 1.42368 1.43700 1.52787 1.87007 2.00521 2.44629 2.47938 2.57009 2.94223 3.31847 3.53505 3.68546 3.76722 3.86510 4.03022 4.06407 4.11969 4.20503 4.34128 4.38561 4.39789 4.41515 4.47944 4.50623 4.65506 4.70307 4.73776 4.75416 4.81977 4.88138 4.94735 5.05019 5.08643 5.11577 5.12309 5.30089 5.37308 5.42325 5.52871 5.66028 5.71411 5.78817 6.16347 6.20623 6.62932 6.64942 7.12527 7.32336 7.77856 8.42090 9.23729 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.003804 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.085632 B = 7359.761419 C = 8285.773284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.088 3.912 4 C -0.165 4.165 5 C -0.084 4.084 6 C -0.111 4.111 7 C -0.140 4.140 8 C 0.553 3.447 9 O -0.549 6.549 10 N -0.693 5.693 11 C 0.168 3.832 12 C -0.138 4.138 13 C -0.127 4.127 14 C 0.185 3.815 15 N -0.620 5.620 16 C -0.243 4.243 17 H 0.063 0.937 18 C -0.056 4.056 19 N -0.943 5.943 20 Si 0.972 3.028 21 H -0.284 1.284 22 H -0.286 1.286 23 H -0.280 1.280 24 C 0.128 3.872 25 C 0.091 3.909 26 O -0.338 6.338 27 C 0.055 3.945 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.172 0.828 32 H 0.174 0.826 33 H 0.148 0.852 34 H 0.406 0.594 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.019 0.981 41 H 0.009 0.991 42 H 0.248 0.752 43 H 0.027 0.973 44 H 0.024 0.976 45 H 0.097 0.903 46 H 0.052 0.948 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.488 -5.012 -16.600 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.244 6.244 3 C 0.042 3.958 4 C -0.184 4.184 5 C -0.101 4.101 6 C -0.130 4.130 7 C -0.143 4.143 8 C 0.341 3.659 9 O -0.428 6.428 10 N -0.345 5.345 11 C 0.081 3.919 12 C -0.197 4.197 13 C -0.166 4.166 14 C 0.061 3.939 15 N -0.346 5.346 16 C -0.372 4.372 17 H 0.081 0.919 18 C -0.249 4.249 19 N -0.592 5.592 20 Si 0.800 3.200 21 H -0.211 1.211 22 H -0.212 1.212 23 H -0.205 1.205 24 C 0.002 3.998 25 C 0.045 3.955 26 O -0.255 6.255 27 C -0.039 4.039 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.135 0.865 31 H 0.189 0.811 32 H 0.191 0.809 33 H 0.166 0.834 34 H 0.243 0.757 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.037 0.963 41 H 0.027 0.973 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.041 0.959 45 H 0.116 0.884 46 H 0.071 0.929 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -15.858 -5.918 -16.265 23.475 hybrid contribution -0.082 0.285 1.386 1.417 sum -15.940 -5.633 -14.880 22.521 Atomic orbital electron populations 1.23441 0.76002 1.05781 1.02728 1.86151 1.23758 1.25862 1.88620 1.19405 0.90659 0.86506 0.99241 1.21729 1.01868 0.90808 1.03960 1.21344 0.93576 0.98673 0.96535 1.21475 0.94961 0.96935 0.99649 1.20288 0.93237 0.94052 1.06771 1.18237 0.87566 0.83670 0.76425 1.90730 1.66120 1.35913 1.50003 1.45661 1.06847 1.07874 1.74087 1.21360 0.79328 0.96518 0.94666 1.21901 1.01249 1.01200 0.95310 1.23111 1.02942 0.93938 0.96577 1.20953 0.98155 0.86170 0.88652 1.44672 1.86147 1.02646 1.01185 1.19291 1.42870 0.92752 0.82334 0.91878 1.25467 1.02456 0.95182 1.01813 1.70133 1.57673 0.97937 1.33449 0.85190 0.77500 0.76904 0.80406 1.21113 1.21228 1.20547 1.21982 0.96749 0.92220 0.88874 1.18299 0.87499 0.86032 1.03670 1.85971 1.70559 1.38171 1.30762 1.22860 0.99260 0.98372 0.83422 0.91463 0.90666 0.86538 0.81069 0.80881 0.83405 0.75695 0.90283 0.90646 0.92705 0.88875 0.88169 0.96299 0.97267 0.94249 0.95466 0.95880 0.88433 0.92908 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -7.86 10.28 -79.70 -0.82 -8.67 16 3 C 0.09 2.27 6.69 22.54 0.15 2.42 16 4 C -0.17 -2.98 9.03 22.39 0.20 -2.77 16 5 C -0.08 -1.46 10.02 22.23 0.22 -1.24 16 6 C -0.11 -2.63 9.53 22.53 0.21 -2.41 16 7 C -0.14 -4.47 5.88 -20.02 -0.12 -4.58 16 8 C 0.55 20.51 7.15 86.70 0.62 21.13 16 9 O -0.55 -23.57 10.74 16.94 0.18 -23.39 16 10 N -0.69 -23.30 5.12 -419.75 -2.15 -25.45 16 11 C 0.17 5.96 0.82 5.00 0.00 5.97 16 12 C -0.14 -4.04 8.62 71.98 0.62 -3.42 16 13 C -0.13 -4.32 5.99 31.78 0.19 -4.13 16 14 C 0.19 8.97 5.36 86.73 0.47 9.43 16 15 N -0.62 -33.57 3.39 -691.97 -2.35 -35.92 16 16 C -0.24 -14.64 10.28 84.03 0.86 -13.78 16 17 H 0.06 3.84 7.83 -2.91 -0.02 3.81 16 18 C -0.06 -3.28 5.49 84.86 0.47 -2.81 16 19 N -0.94 -56.69 10.31 21.65 0.22 -56.46 16 20 Si 0.97 47.83 29.55 68.60 2.03 49.86 16 21 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 24 C 0.13 5.97 6.11 86.86 0.53 6.51 16 25 C 0.09 2.98 5.75 22.92 0.13 3.11 16 26 O -0.34 -12.42 8.63 -63.25 -0.55 -12.96 16 27 C 0.05 1.57 10.48 113.37 1.19 2.75 16 28 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 29 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 30 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.17 1.73 6.27 -2.91 -0.02 1.71 16 32 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.15 2.92 6.40 -2.91 -0.02 2.90 16 34 H 0.41 11.61 6.52 -92.70 -0.60 11.01 16 35 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 37 H 0.05 1.82 6.45 -2.39 -0.02 1.80 16 38 H 0.09 2.85 8.04 -2.39 -0.02 2.83 16 39 H 0.10 2.71 8.05 -2.39 -0.02 2.69 16 40 H 0.02 1.00 7.38 -2.39 -0.02 0.98 16 41 H 0.01 0.50 7.51 -2.38 -0.02 0.48 16 42 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.03 1.43 6.31 -2.38 -0.02 1.41 16 44 H 0.02 1.08 8.03 -2.39 -0.02 1.06 16 45 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 46 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.04 1.11 7.47 -2.39 -0.02 1.09 16 Total: -1.00 -81.45 375.00 3.82 -77.63 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.39 Total: 17.91 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 6.86 Total: 17.45 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -4.28 Total: -117.84 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -1.18 Total: -45.02 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -81.45 3.82 -77.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046797756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.990 kcal (2) G-P(sol) polarization free energy of solvation -81.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds